Antimicrobial Agents and Chemotherapy, March 1998, p. 571-578, Vol. 42, No. 3
0066-4804/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Biosearch Italia s.p.a.,
Received 4 August 1997/Returned for modification 22 October
1997/Accepted 18 December 1997
Bicyclomycin is a commercially important antibiotic that has been
shown to be effective against many gram-negative bacteria. Genetic and biochemical evidence indicates that the antibiotic interferes with RNA metabolism in Escherichia coli by
inhibiting the activity of transcription termination factor Rho.
However, the precise mechanism of inhibition is not completely known.
In this study we have used in vitro transcription assays to analyze the
effects of bicyclomycin on the termination step of transcription. The
Rho-dependent transcription termination region located within the
hisG cistron of Salmonella typhimurium has been
used as an experimental system. The possible interference of the
antibiotic with the various functions of factor Rho, such as RNA
binding at the primary site, ATP binding, and hexamer formation, has
been investigated by RNA gel mobility shift, photochemical
cross-linking, and gel filtration experiments. The results of these
studies demonstrate that bicyclomycin does not interfere with the
binding of Rho to the loading site on nascent RNA. Binding of the
factor to ATP is not impeded, on the contrary, the antibiotic appears
to decrease the apparent equilibrium dissociation constant for ATP in
photochemical cross-linking experiments. The available evidence
suggests that this decrease might be due to an interference with the
correct positioning of ATP within the nucleotide-binding pocket leading b an inherent block of ATP hydrolysis. Possibly, as a consequence of
this interference, the antibiotic also prevents ATP-dependent stabilization of Rho hexamers.
*
Corresponding author. Mailing address: Dipartimento di
Biologia e Patologia Cellulare e Moleculare, Centro di Endocrinologia ed Oncologia Sperimentale of the C.N.R., Via S. Pansini 5, 80131 Naples, Italy. Phone: 39 81 7463614. Fax: 39 81 7701016. E-mail: BRUCAR{at}CDS.UNINA.IT.
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