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Antimicrobial Agents and Chemotherapy, March 2001, p. 893-900, Vol. 45, No. 3
Laboratoire de Rétrovirologie, Centre
de Recherche Public-Santé,1
Service National des Maladies Infectieuses, Centre
Hospitalier de Luxembourg,2 and
Laboratoire National de Santé,3
Luxembourg, Luxembourg, and Université Catholique de
Louvain, Unité de Virologie Médicale, Brussels,
Belgium4
Received 24 March 2000/Returned for modification 22 June
2000/Accepted 19 December 2000
The objective of this observational study was to assess the genetic
variability in the human immunodeficiency virus (HIV) protease gene
from HIV type 1 (HIV-1)-positive (clade B), protease inhibitor-naïve patients and to evaluate its association with the subsequent effectiveness of a protease inhibitor-containing triple-drug regimen. The protease gene was sequenced from
plasma-derived virus from 116 protease inhibitor-naïve
patients. The virological response to a triple-drug regimen containing
indinavir, ritonavir, or saquinavir was evaluated every 3 months for as
long as 2 years (n = 40). A total of 36 different
amino acid substitutions compared to the reference sequence (HIV-1
HXB2) were detected. No substitutions at the active site similar to the
primary resistance mutations were found. The most frequent
substitutions (prevalence, >10%) at baseline were located at codons
15, 13, 12, 62, 36, 64, 41, 35, 3, 93, 77, 63, and 37 (in ascending
order of frequency). The mean number of polymorphisms was 4.2. A
relatively poorer response to therapy was associated with a high number
of baseline polymorphisms and, to a lesser extent, with the presence of
I93L at baseline in comparison with the wild-type virus. A71V/T was
slightly associated with a poorer response to first-line
ritonavir-based therapy. In summary, within clade B viruses, protease
gene natural polymorphisms are common. There is evidence suggesting
that treatment response is associated with this genetic background, but
most of the specific contributors could not be firmly identified. I93L,
occurring in about 30% of untreated patients, may play a role, as
A71V/T possibly does in ritonavir-treated patients.
0066-4804/01/$04.00+0 DOI: 10.1128/AAC.45.3.893-900.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Variant Human Immunodeficiency Virus Type 1 Proteases and
Response to Combination Therapy Including a Protease
Inhibitor
*
Corresponding author. Mailing address: Laboratoire de
Rétrovirologie, CRP-Santé, 4 rue E. Barblé, L-1200
Luxembourg, Luxembourg. Phone: 352-44116105. Fax: 352-44116113. E-mail:
servais.j{at}retrovirology.lu.
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