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Antimicrobial Agents and Chemotherapy, November 1998, p. 2799-2803, Vol. 42, No. 11
Department of Infection,
Received 13 April 1998/Returned for modification 8 July
1998/Accepted 8 August 1998
penB is a chromosomal mutation that confers resistance
to Low-level chromosomally mediated
resistance to penicillin and tetracycline in Neisseria
gonorrhoeae has been shown in laboratory mutants
(29) and clinical isolates (15) to be due to
three mutations: penA, mtr, and penB.
penA results in decreased binding of penicillin to PBP
2 (8) and results from the insertion of an aspartate codon
(10). mtr (formerly ery
[29]) results in increased resistance to a range of
hydrophilic and hydrophobic substances including antibiotics. The
mtr phenotype results in increased expression of the
MtrCDE efflux pump (14, 27).
penB increases the level of resistance to both penicillin
and tetracycline (29). It is apparent only in strains with
the Mtr phenotype. Subsequent study of strains exhibiting the
penB phenotype showed that the molecular weight of a major
outer membrane protein was altered with acquisition of the
penB-associated antibiotic phenotype (3, 13). The
locus for this "new membrane protein" (nmp; now known as
por) cotransformed with penB at a frequency of
98%. Using clinical isolates, Bygdeman et al. (2) found 100% cotransformation between a locus for low-level penicillin resistance and that for a IB (WII/WIII) Por serogroup specificity.
The gonococcus has only one major porin (Por; formerly protein I or
PI). Its different forms are alleles of a single gene, por
(4). Liposome swelling assays (9),
electrophysical ion conductivity experiments (31), and the
predicted amino acid sequence hydrophobicity plot of Por (4)
indicate that it has a structure similar to those of Escherichia
coli OmpC and OmpF. However, its anion selectivity is more similar
to that of E. coli PhoE. A single gonococcal strain will
express one structurally and immunologically invariant form of Por.
However, the amino acid sequence of Por shows considerable diversity.
This diversity has allowed Por to be used as the basis of serotyping by
coagglutination with a panel of monoclonal antibodies (21).
Porins are well recognized as allowing the diffusion across the outer
membrane of hydrophilic molecules including antibiotics (24). We have investigated the possibility that
penB is a mutation in por by determining the
antibiotic susceptibilities, serotypes, equilibrium penicillin
concentrations, and por sequences of isogenic transformants
produced by using the chromosomal DNA of strain FA140 (penA
mtr, penB; porin serovar IB1). Transformation to the PenB antibiotic phenotype was also attempted with PCR-derived por from FA140. Given the diversity of Por, to help us
ascribe functional significance to differences in Por amino acid
sequence, we used isogenic strains of gonococci of the same
serovar. In addition, we have compared the sequence of loop 3 of
por from clinical isolates of gonococci susceptible to or
with chromosomally mediated resistance to penicillin.
(This work was presented in part in oral form at the 35th Interscience
Conference on Antimicrobial Agents and Chemotherapy of the American
Society for Microbiology, San Francisco, Calif., 17 to 20 September
1995.)
Gonococcal strains.
The four isogenic strains FA19 (wild
type), FA102 (penA), FA136 (penA mtr), and FA140
(penA mtr penB) (29) and strain H1, a clinical
isolate (15), were used. Gonococcal strains were grown on GC
agar base (36 g/liter; Difco Laboratories, West Molesey, Surrey,
United Kingdom) supplemented with 1% IsoVitaleX (Becton Dickinson,
Cowley, Oxford, United Kingdom) at 36°C in 5% carbon dioxide.
Derivatives of H1 (H1-1, H1-2, and H1-3) were constructed by
transformation with chromosomal DNA from FA140 (15).
Erythromycin was used to select for mtr transformants;
penicillin was used for all other selections. The concentration of
antibiotic used to select for transformants was equal to or four times
the MIC of that antibiotic for the recipient.
Phenotypic characterization of strains.
Susceptibility to a
range of antibiotics including, penicillin, tetracycline,
ciprofloxacin, and erythromycin was tested by an agar dilution method
(15). Suspensions for susceptibility testing were prepared
from overnight growth of the test strain on GC agar base supplemented
with 1% IsoVitaleX incubated at 36°C in 5% CO2.
Antibiotic-containing medium (GC agar base supplemented with 1%
IsoVitaleX) was inoculated with a multipoint inoculator to give a final
inoculum of 105 CFU per spot. The inoculated plates were
incubated at 36°C in 5% carbon dioxide for 24 h. The MIC was
read as the lowest concentration of the antibiotic to give
complete inhibition of growth.
0066-4804/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Gonococcal Resistance to
-Lactams and Tetracycline Involves
Mutation in Loop 3 of the Porin Encoded at the
penB Locus
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ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
-lactams and tetracyclines and reduced susceptibility to
quinolones in Neisseria gonorrhoeae. It is linked to the
porin gene (por) and requires the increased expression of
an efflux pump due to mtr. Transformation of a susceptible
gonococcus (strain H1) with chromosomal DNA from strain FA140
(penA mtr penB; porin serovar IB1) and conjugal transfer of
a
-lactamase-expressing plasmid was used to produce isogenic
strains for determination of equilibrium periplasmic penicillin
concentrations by the method of Zimmermann and Rosselet (W. Zimmermann
and A. Rosselet, Antimicrob. Agents Chemother. 12:368-372, 1977). In
transformants with the Mtr and PenB phenotypes, equilibrium
concentrations of penicillin were reduced. DNA sequence analysis of
por from isogenic penB and
penB+ transformants revealed 14 sequence
differences; nine of these differences resulted in amino acid changes.
Three amino acid changes were found in the putative gonococcal
equivalent of the pore-constricting loop 3 of Escherichia
coli OmpF. Two of these changes (Gly-101-Ala-102
Asp-Asp) result in an increased negative charge at this position in
por loop 3. PCR products comprising the complete
por gene from strain FA140 were transformed into strain
H1-2 (penA mtr; porin serovar IB-3), with the resulting
transformants having the antibiotic susceptibility phenotype associated
with penB. penB-like mutations were found in loop 3 of
clinical isolates of gonococci with chromosomally mediated resistance
to penicillin. We conclude that penB is a mutation in loop
3 of por that reduces porin permeability to hydrophilic antibiotics and plays an important role in the development of chromosomally mediated resistance to penicillin and tetracycline in gonococci.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
-lactamase-producing clinical isolate containing a
36-kb conjugative plasmid and a 7.2-kb
-lactamase-expressing plasmid (17).
TABLE 1.
Serovars and antibiotic susceptibilities of isogenic
strains of N. gonorrhoeae
Equilibrium periplasmic penicillin concentration assay.
Equilibrium periplasmic penicillin concentrations in
-lactamase-producing derivatives of the test strains
were calculated by the method of Zimmermann and Rosselet
(32). Spontaneous rifampin-resistant mutants of the test
strains were used as recipients. Conjugations were performed
(16) with rifampin-sensitive strain BL1066 as the donor.
Selection was with penicillin and rifampin. To ensure that
transconjugants were derived from the recipient strains, both
transconjugants and recipients were serotyped, tested for
-lactamase production by using nitrocefin
(26), and tested for susceptibility to cefuroxime,
tetracycline, nalidixic acid, ciprofloxacin, crystal violet, and
erythromycin. All the rifampin-resistant
-lactamase-producing transconjugants used as
test strains showed no changes in serovar or susceptibilities to these
antibiotics when compared to the serovars and susceptibilities of their
corresponding isogenic recipients.
-lactamase-producing test strains to be tested were
grown overnight on GC agar base (36 g/liter; Difco) containing 5 mg of
penicillin per liter. They were then grown to the mid-logarithmic phase
in 1.5% proteose peptone broth (Difco) containing 1% IsoVitaleX, harvested by centrifugation, washed three times with assay buffer (10 mM magnesium chloride, 10 mM sodium phosphate [pH 7]), and resuspended in assay buffer. Measurements were made with three different preparations of the same aliquot of cells: intact
cells, cells disrupted by freezing-thawing (three cycles of placement in liquid nitrogen for 10 min and exposure to 37°C for 10 min), and
the supernatant of intact cells was collected by filtration (0.45-µm-pore-size nitrocellulose filter) to correct for the
extracellular
-lactamase that leaked during cell
harvesting. The final concentration of cells in the assay mixture was
equivalent to a cell optical density (OD) of 0.01 at 540 nm. The
microiodometric method (25) of measuring
-lactamase was used with a penicillin concentration of
250 µM at 37°C in 10 mM magnesium chloride-10 mM sodium phosphate (pH 7) in a reaction volume of 1 ml. To control for thermal hydrolysis of penicillin and nonspecific reduction of the color developer, a
control tube was run simultaneously with the test samples. In addition
to the constituents of the other tubes, the control tube contained
sodium tungstate and acetic acid to inhibit
-lactamase. Assay conditions allowed calculation of rates of hydrolysis by linear
regression from duplicate samples at five time points during the linear
time course. The hydrolysis by intact and disrupted cells was measured
over a 10-min time course (time points of 2, 4, 6, 8, and 10 min).
Hydrolysis by the cell supernatant was measured over 20 min (time
points of 2, 5, 10, 15, and 20 min). All measurements for intact cells
were made within 40 min of their final wash. To stop penicillin
hydrolysis at the various time points, 0.5 ml of 0.5 M sodium tungstate
in 1 M acetic acid was added with vigorous mixing. Detection of the
penicilloic acid resulting from penicillin hydrolysis was by the
decolorization of 0.5 ml of the starch-iodide color developer (final
iodine concentration, 40 µM) (25) for at least 20 min. The
ODs of the test samples were measured at 620 nm in a split beam with
reference to the control sample. The change in OD with time was
proportional to the rate of penicillin hydrolysis. The "hydrolysis
ratio" was the ratio of the rate of penicillin hydrolysis by intact
cells (corrected for the
-lactamase that leaked into the
supernatant) to the rate of penicillin hydrolysis by an identical
aliquot of cells that had been disrupted. The Michaelis-Menten constant
(Km) was calculated from hydrolysis assays
performed with enzyme liberated by freezing-thawing. Under these assay
conditions the Km was 64 µM. This value of
Km and the hydrolysis ratio were used to
calculate the equilibrium concentration of penicillin in the periplasm
(28, 32) with an extracellular concentration of 250 µM penicillin.
por sequencing. For sequencing, por PCR (11) was performed with whole cells as the DNA source. Briefly, sequencing was performed with the transformants of H1 made by using chromosomal DNA from strain FA140 (H1-2, penA mtr; H1-3, penA mtr penB). PCR products (PCRPs) were purified by electrophoresis in low-melting-point agarose. Sequencing reactions were performed with this purified PCRP as a template for dideoxynucleotide sequencing (Sequenase kit; Amersham). Both strands of por were sequenced, and additional primers were prepared as necessary. Sequence differences between strains H1-2 and H1-3 were confirmed by at least two independent sequencing reactions in each direction performed by at least two different PCRs. The region of por thought to encode for the gonococcal equivalent of loop 3 of E. coli OmpF (18, 19) was sequenced by amplification of the complete por gene (11) followed by cycle sequencing with two internal primers (Kal1, 5'-251TTGGAACAAGGTGCCCTCCGT270-3'; Kal2, 5'-600TGTGCGAAGAAGCCGCTGTT581-3'; sequence numbers correspond to the por sequence published by Butt et al. [1]). Cycle sequencing was performed with an ABI 310 Genetic Analyzer and by fluorescent dye terminator cycle sequencing chemistry (PE Applied Biosystems, Warrington, United Kingdom).
Transformation of por PCR products.
por
PCR (11) was performed with whole cells added directly to
the reaction mixture. This PCR amplified the complete por gene including the leader sequence. PCRPs made from reactions with
strain FA140 were ligated into the EcoRV site of pBluescript II KS
(Stratagene) to which dTTP had been added. This ligation was
transformed into competent E. coli XL-1 Blue
(Stratagene). PCRPs derived from the strain FA140 por
(porFA140-PCRPs) were generated with four
different clones of por in E. coli as the source of target DNA. The porFA140-PCRPs
generated by these four separate PCRs were pooled. Hence,
porFA140-PCRPs uncontaminated by FA140
chromosomal DNA were produced for transformation into H1-2.
-lactamase) of pBluescript was excluded by testing transformants for nitrocefin hydrolysis (26).
Nucleotide sequence accession numbers. The sequences of por from H1-2 and H1-3 have been deposited in the EMBL Nucleotide Database with accession nos. AJ004943 and AJ004944, respectively.
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RESULTS |
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Transformation experiments with FA140 chromosomal DNA. A series of transformants with successive acquisition of penA, mtr, and penB were made in strain H1. The changes in the susceptibilities of these transformants to a range of antibiotics closely followed that of the FA series of strains as they acquired each of the penA, mtr, and penB mutations (Table 1). In both series of strains acquisition of mtr resulted in increased levels of resistance to penicillin, cefuroxime, crystal violet, and erythromycin. In addition, outer membrane protein analysis showed increased production of efflux proteins of approximately 46 kDa in mtr strains (data not shown). Acquisition of penB was associated with increased levels of resistance to penicillin, cefuroxime, tetracycline, nalidixic acid, and ciprofloxacin (Table 1). When H1-2 was transformed with FA140 DNA to the PenB phenotype, its serovar remained IB-3. The serovar of FA136 changed from IA-2 to IB-1 when it was transformed to FA140 DNA (Table 1).
Equilibrium penicillin concentrations in isogenic transformants. Equilibrium periplasmic concentrations did not show significant changes when the wild-type strains (H1 and FA19) acquired penA (H1-1 and FA102, respectively; Table 2). However, the acquisition of mtr (H1-2 and FA136, respectively) and penB (H1-3 and FA140, respectively) did result in significant reductions in equilibrium penicillin concentrations. The effect was cooperative such that the presence of both mutations (mtr penB) led to lower levels of penicillin in the periplasm than those from the presence of mtr alone.
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Sequencing of por from isogenic strains. DNA sequencing of the complete por gene of the isogenic strains H1-2 and H1-3 revealed 14 differences in sequence, of which 9 resulted in amino acid differences between the two strains (Table 3). Three of the amino acid sequence differences were found in the Por equivalent of E. coli OmpF and PhoE loop 3 (18, 19); one sequence difference (amino acid 128) was found close to the carboxyl end of loop 3 (Table 3).
|
Transformation experiments with
porFA140-PCRP.
Strain H1-2 (penA
mtr) was transformed with porFA140-PCRP,
and transformants were selected on GC agar containing 0.5 mg of penicillin per ml (twice the MIC for H1-2). No transformants of H1-2
were obtained with pBluescript II KS
DNA, E. coli
XL-1 Blue DNA or DNase-treated porFA140-PCRP.
Twenty transformants and the recipient (H1-2) from each of four
independent transformation experiments were tested for their
susceptibilities to penicillin, tetracycline, and nalidixic acid. All
of the transformants produced by porFA140-PCRP
had the same antibiotic susceptibility and serotype as H1-3 (penA
mtr penB). No transformants produced detectable
-lactamase.
Loop 3 sequence of Por in clinical isolates. The susceptibilities of the clinical isolates to penicillin, erythromycin, and Triton X-100 are detailed in Table 4. In these isolates the por gene was sequenced from the 80 bases at the 5' end of the putative loop 3 through to the 25 bases from the 3' end of loop 3. This sequencing identified only two amino acid differences in loop 3. In the sensitive group of isolates, amino acids 101 and 102 were both arginine; in the resistant group of isolates, these amino acids were glutamine and glycine (Table 4).
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DISCUSSION |
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|
|
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Low-level resistance to structurally diverse hydrophilic
antibiotics associated with penB and cotransformation of
penB with por (3, 13) suggested a role
for porin in the PenB phenotype. Our use of the method of Zimmermann
and Rosselet (32) for measuring outer membrane permeability
to penicillin further implicates Por in this phenotype. This method is
a sensitive and specific means of measuring equilibrium
-lactam
concentrations. Such concentrations are the net result of influx and
efflux of a
-lactam antibiotic. Two findings support the
validity of this method for determination of equilibrium
concentrations in our isogenic strains. First, the equilibrium
concentrations were reduced in association with mtr. This
reduction is consistent with the recognized increased efflux of drugs
resulting from derepression of the MtrCDE efflux pump with
mtr (14, 27). The second finding supporting this method is the lack of significant changes in equilibrium concentrations in association with a change in penicillin-binding proteins alone (penA). In our measurements of equilibrium penicillin
concentrations in two sets of isogenic transformants, we have shown
that penB results in such concentrations being
significantly reduced. These findings suggest that the PenB phenotype
may result from a reduction in the total porin permeability of
the outer membrane due either to changes in the amount of Por expressed
or to changes in the structure of Por that influence its
function. When FA136 (penA mtr; serovar IA-2) was
transformed to FA140 (penA mtr penB; serovar IB-3), the
porin serovar changed from IA to IB, indicating the possibility
that a structural change in Por is important in penB. However, we have shown that penB may be transformed into
H1-2 (serovar IB-3) without any change in serovar. Thus, if
structural changes in Por are relevant to the PenB phenotype,
they are probably in regions not associated with serovar-specific epitopes.
We were able to transform H1-2 to the penB phenotype with the por PCRP from strain FA140. The transformation of H1-2 to the penB phenotype with porFA140-PCRP indicates that it is changes in the structure of the porin itself that may be responsible for this phenotype. Sequence analysis of por from the isogenic strains H1-2 and H1-3 made by transformation with FA140 DNA demonstrated a number of amino acid differences.
No porin structural data are available for gonococcal Por that would
allow the precise location of the differences in Por between H1-2 and
H1-3 to be identified. However, inferences may be drawn from data
relating to other porins. Alignments of Por with other members of the
porin superfamily by using the long alignment of the poorly conserved
central region proposed by Jeanteur et al. (18, 19)
revealed three mutations associated with penB in a
region equivalent to loop 3 of E. coli OmpF and
PhoE. A fourth mutation (Leu-128
Arg) was found close to
the carboxyl end of loop 3. Crystal structures of E. coli OmpF and PhoE show that although this loop is on the external
surface of the porin, it falls into the lumen of the pore, thereby
constricting it (7). Several studies have demonstrated the
importance of loop 3 in OmpF function. A colicin-resistant
E. coli mutant with a single mutation (Gly-119
Asp)
in loop 3 of OmpF has been shown to have this area of constriction
altered. The consequences of this alteration are a reduction in channel
conductance, decreased sugar permeation, and probably, decreased
colicin diffusion across the outer membrane (20). In
addition, this mutant was shown to have reduced cephalosporin susceptibility, depending on the charge and structure of the drug (23).
Our attempts at modeling gonococcal Por on OmpF have been unsuccessful
due to the gaps in the alignments of Por with other porins (18,
19). The contribution of other mutations in Por to the PenB
phenotype are therefore unknown. However, by analogy with E. coli OmpF, it is likely that the penB-associated
changes in strains H1-2 and H1-3 in loop 3 are responsible for the
decreased levels of entry of penicillin, tetracycline, and other
hydrophilic antibiotics into the cell. The mutation
Gly-101-Ala-102
Asp-Asp results in an increase in negative
charge at this point in loop 3. No significant alterations in
charge result from the combined mutations Gly-126
Glu and
Leu-128
Arg. It may be that the mutation Gly-101-Ala-102
Asp-Asp
alone is responsible for reduced porin permeability to antibiotics such
as penicillin and tetracycline which have a net negative charge at pH
7. The changes in Por that result from mutations at amino acids 101 and
102 may alter permeability only to a small degree. Reduced
diffusion in a penB porin might therefore become
manifest only when the MtrCDE efflux pump functions. This explains the
early observation of Sparling et al. (29) that the PenB
phenotype requires the Mtr phenotype.
Asp-Asp at positions 101 and 102 of Por have been found in strain MS11 (5) and a number of other strains sequenced (EMBL accession no. AF044790, four strains; EMBL accession no. AF044793, one strain). This illustrates the diversity in amino acid sequence found in Por, but insufficient antibiotic susceptibility data are available to us to allow us to assess whether these strains have the PenB phenotype. However, when Carbonetti et al. (6) introduced MS11 Por (IB) into a derivative of FA136 with a IA Por, resistance to penicillin and tetracycline increased. When, in the same study, a derivative of FA136 with a greater proportion of the 5' end of por from a IA strain was constructed, this increase in resistance was not seen, possibly because Por loop 3 from MS11 was not present.
Chromosomally mediated resistance to penicillin and tetracycline is
associated with gonococci of IB porin serovars (30). Clinical isolates resistant to these drugs contain three mutations: penA, mtr, and penB (15).
We sequenced loop 3 of the por genes from clinical isolates
to ascertain if penB-like mutations were present. It is
possible that penB mutations that are not phenotypically manifest due to the absence of mtr may be present in
clinical isolates. To allow division into clinical
penB+ and penB groups of strains,
they were categorized by antibiotic phenotype. The sensitive group of
isolates had reduced susceptibility to erythromycin and Triton
X-100 combined with penicillin susceptibility, which may suggest that
mtr was expressed while penB-like mutations were
not present. By contrast, the antibiotic susceptibilities of the
resistant group of isolates indicated that they were likely to express
mtr and penB. The only differences in the loop 3 amino acid sequence between these two groups was at Por positions 101 and 102. As in the isogenic laboratory strains, the differences (Arg-101-Arg-102
Gln-Gly) result in an increase in the
negative charge at this position. No differences comparable to those in the laboratory strains H1-2 and H1-3 (Gly-126
Glu and Leu-128
Arg) were found between the two groups. This further implicates amino acids
101 and 102 as being of importance in the penB phenotype.
In conclusion, it appears that penB is associated with mutations in loop 3 of the gonococcal porin that are also found in clinical isolates. These mutations increase the negative charge at amino acid positions 101 and 102, with a consequent reduction in porin permeability to negatively charged solutes in the presence of an efflux pump. The gonococcus has demonstrated that, like other bacteria (24), it can develop the efflux and permeability changes which, working in concert, allow it to resist antibiotics of structurally different classes.
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ACKNOWLEDGMENTS |
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This work was supported by a Medical Graduate Fellowship (0131249/Z/90) to M.J.G. and a Research Career Development Fellowship to B.D.R., both from The Wellcome Trust, and a scholarship from the Embassy of the United Arab Emirates to K.A.-H. Funding for sequencing equipment was from the Faculty of Medicine and Dentistry, University of Birmingham.
We thank PF Sparling for providing the FA series of isogenic gonococci.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Infection, University of Birmingham Medical School, Edgbaston, Birmingham B15 2TT., United Kingdom. Phone: 44 121 414 3436. Fax: 44 121 414 3454. E-mail: m.j.gill{at}bham.ac.uk.
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