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Antimicrobial Agents and Chemotherapy, May 1998, p. 1042-1044, Vol. 42, No. 5
Servicio de Microbiología, Hospital
Ramón y Cajal, Madrid 28034, Spain
Received 25 August 1997/Returned for modification 17 December
1997/Accepted 3 March 1998
A TEM-1 The evolution and spread of
E. coli K-12 strains and plasmids.
The bacterial
strains used in this work were E. coli RYC1000
(araD139 Antibiotic susceptibility testing.
Agar dilution assays were
performed and interpreted according to the guidelines of the National
Committee for Clinical Laboratory Standards (12). Standard
antibiotic powders were kindly provided by pharmaceutical companies as
follows: amoxicillin (AM), SmithKline Beecham Laboratories; CER and CE,
Eli Lilly and Co.; CAZ, Glaxo-Wellcome; CTX, Hoechst Roussel
Pharmaceuticals; ATM, Bristol-Myers Squibb.
Recombinant DNA techniques.
Standard recombinant techniques
were performed as previously described (14). Nucleotide
sequencing was carried out by the dideoxynucleotide chain termination
method (15) with Sequenase (U.S. Biochemicals) and
blaTEM-1 specific primers.
Construction of mutants.
Construction of the three single
mutants, by site-directed mutagenesis on M13mp (i) TEM-10.
The gene encoding TEM-10 with the R164S and
E240K amino acid substitutions was constructed by replacing the
PstI fragment of pBGTEM-K240 with its homolog from
pBGTEM-12. The resulting hybrid plasmid was designated pBGTEM-10, and
the pI of the TEM-10 enzyme was 5.6.
(ii) R164S-A237T.
The gene encoding a TEM variant with
the R164S and A237T changes was constructed by replacing the
PstI fragment of pBGTEM-T237 with that from pBGTEM-12. The
pI of the TEM-S164-T237 enzyme was 5.2.
(iii) A237T-E240K.
The gene encoding a TEM variant with the
A237T and E240K changes was constructed by replacing the
PstI fragment of pBGTEM-5 (see below) with that from
pBGTEM-1. The pI of the TEM-T237-K240 enzyme was 5.9.
(iv) TEM-5.
The TEM-5 derivative contains the changes R164S,
A237T, and E240K. The gene encoding TEM-5 was constructed by replacing
the ScaI-EcoRI fragment of pBGTEM-12 (containing
the 5' region of the bla gene) with that of plasmid pAT268
(16), which contains the two additional mutations A237T and
E240K. The pI of the TEM-5 enzyme was 5.6.
0066-4804/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
A237T as a Modulating Mutation in Naturally
Occurring Extended-Spectrum TEM-Type
-Lactamases
![]()
ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
-lactamase derivative containing the single amino acid
substitution A237T slightly increased (from 24 to 32 µg/ml) the
cephalothin MIC for Escherichia coli RYC1000 but did not
influence the activities of cefotaxime, ceftazidime, and aztreonam
(MICs of 0.03, 0.12, and 0.06 µg/ml, respectively). Despite its
apparent neutrality, addition of the A237T mutation to the pair of
mutations characterizing TEM-10 (R164S and E240K) had a strong effect
on substrate preference. Ceftazidime and aztreonam MICs decreased from
128 and 16 µg/ml to 16 and 2 µg/ml, respectively. In contrast, the cefotaxime MIC increased from 0.5 to 4 µg/ml. The
acquisition of apparently neutral or even deleterious mutations results
in a very effective mechanism of resistance to different
-lactams that may be simultaneously or subsequently present in the environment. We propose here that the mutation in position 237 is an example of a
modulating mutation and that consideration of this type of mutation may
be important for understanding the evolution of
-lactamases.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
-lactamases in enteric bacteria seem to be the mirror consequences
of the evolution and consumption of
-lactam antibiotics. New
variant TEM-
-lactamase molecules have evolved under the
pressure of new expanded-spectrum cephalosporins and monobactams.
Nevertheless, the use of the new
-lactam agents has not been
followed by a substantial drop in the use of the old ones, and the
result is a net diversification of the selective network. This
situation may create a complicated adaptive problem for enteric
bacteria. In fact, an efficient mutation of a
-lactamase leading to an improved hydrolysis rate of a new type of
-lactam may lack efficiency against the old antibiotic substrates. Although an
ever-increasing number of amino acid substitutions are being described,
most naturally occurring extended-spectrum TEM derivatives are
the result of amino acid replacements in one of seven positions. These amino acid replacements, numbered according to Ambler
(1), are as follows: Q39K, E104K, R164S or R164H,
A237T, G238S, E240K, and T265M (10). Combinations of these
amino acid substitutions have also been reported (4, 5, 7,
10). The A237T substitution was early found to be responsible for
a decrease in the TEM enzymes' preference for penams
(benzyl-penicillin and ampicillin) versus cephems (cephalosporin
and cephalothin [CE]) (9). A deeper analysis of a broader
range of substrates shows that this cephem versus penem preference is
not generally applicable to every member of these groups of
-lactams. In fact, no differences were found when the cephem versus
penam preferences of TEM-1 and a TEM derivative containing the A237T
substitution were compared for the cephems cephaloridine (CER),
cefotaxime (CTX), and ceftazidime (CAZ) (3). On the
other hand, this apparent neutrality of A237T may be questioned by comparing the susceptibilities of Escherichia coli
derivatives, obtained by directed mutagenesis, containing TEM-10 (with
R164S and E240K) with those containing TEM-5 (harboring R164S and E240K plus A237T). The presence of A237T in this case was associated with
significant alterations in the susceptibilities to CE, CTX, CAZ,
and aztreonam (ATM). In this paper, the potential relevance of
this substitution to the activities and evolution of the TEM enzymes
was studied. For such a purpose, all possible combinations of the
R164S, E240K, and A237T mutations were constructed and the resulting
substrate specificities were evaluated.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
lacU169 rpsL
rib7 thiA gyrA
recA56) and MC4100 [F
, araD139
(argF-lacU169) rpsL flbB5301 fruA25 relA1
rbsR] (6). An MC4100 nalidixic acid-resistant
derivative (MC4100-Nx) was obtained by inoculating the wild-type
strain onto a plate containing this antibiotic at a concentration of
40 µg/ml. Plasmid pBGTEM-1 was constructed by cloning
an EcoRI-SalI fragment from the hybrid phage M13mp
Ap (3) into the plasmid pBGS19
(18), which had been digested with the same restriction
enzymes. Plasmids containing the mutant derivatives were named by
adding the number of the
-lactamase (if described) or the amino
acid change (depending on the case) to the prefix pBGTEM.
Ap (11),
was performed as previously described (3).
Competition experiments.
A nalidixic acid-resistant mutant
of E. coli MC4100 (MC4100-Nx) was obtained. To ensure the
neutrality of the nalidixic acid resistance marker, mixed cultures were
prepared with identical inocula of each of the two isogenic strains
containing the wild-type TEM-1 enzyme and the A237T derivative, i.e.,
MC4100 (pBGTEM-1) plus MC4100-Nx (pBGTEM-T237) and MC4100-Nx (pBGTEM-1)
plus MC4100-Nx (pBGTEM-T237). These mixtures were submitted to
selective pressure for 4 h in tubes with different concentrations
of either CAZ or CTX (0.008, 0.016, 0.032, 0.064, 0.12, 0.25, 0.5, and
1 µg/ml). Cultures without antibiotic were used as controls. After
challenge, aliquots were treated with
-lactamase (Enterobacter
cloacae type IV; Sigma Co., St. Louis, Mo.) for 20 min to prevent
carry-over and were then inoculated onto drug-free broth. After
overnight incubation, dilutions were plated onto agar plates containing kanamycin at a concentration of 40 µg/ml. The final proportion of
each one of these strains was studied by streaking 100 colonies onto
agar plates containing nalidixic acid (40 µg/ml).
Isoelectric focusing.
Analytical isoelectric focusing was
performed in precast polyacrylamide gels (pH 4.0 to 6.5) by using a
PhastSystem apparatus (Pharmacia, Uppsala, Sweden) according to the
instructions of the manufacturer.
-lactamase activity was identified
by the hydrolysis of the chromophore
-lactam nitrocefin (Oxoid,
Basingstoke, United Kingdom).
| |
RESULTS |
|---|
|
|
|---|
Phenotypic characterization of strain harboring the mutant
TEM-T237.
The MICs of several
-lactam antibiotics against the
RYC1000 strain containing either the wild-type
-lactamase TEM-1 or
its variant TEM-T237 were determined by the agar dilution method as previously described (12). As shown in Table
1, with the exception of AM, no
difference was found in the activity of any of the antibiotics against
the strains containing either of the enzymes. Although this
double-dilution method of MIC determination is the one most commonly used in clinical microbiology laboratories, very small differences in susceptibility can be overlooked. We therefore determined the MICs of CE, CTX, CAZ, and ATM by using Epsilon test strips, an agar diffusion-based procedure which enables
discrimination of smaller differences than is possible with the
classical MIC determination methods (2). Again, MICs for the
two strains showed no differences for any of the
-lactams tested,
except for CE. The strain containing TEM-T237 consistently showed a
slightly increased CE MIC compared with that containing TEM-1 (32 versus 24 µg/ml). This result in part confirmed the data previously
reported for this mutation (9). Such a small difference in
MICs may be overlooked by conventional MIC testing based on doubling
dilutions. When the mutations R164S and E240K were also present, the
A237T mutation significantly increased the MIC of CTX (from 0.5 to 4 µg/ml), while decreasing to the same degree the activity against CAZ
(from 128 to 16 µg/ml) (Table 1).
|
Characterization of TEM variants constructed by directed mutagenenesis. To determine the exact contribution of the A237T mutation to the TEM activity in the presence of the R164S and/or E240K mutation, we constructed by directed mutagenesis all possible combined derivatives and studied the corresponding phenotypes.
Table 1 shows the susceptibilities of each constructed mutant in the strain RYC1000 to AM, CER, CE, CTX, CAZ, and ATM as determined by agar dilution assay.(i) Single mutations.
As previously described (3, 16,
17), the change R164S was responsible for a dramatic increase in
the CAZ MIC, with slight increases in the ATM and CTX MICs. An increase
in susceptibility to CE was also observed. E240K, in accordance with
previous communications (3, 13), slightly increased the CAZ
and ATM MICs, with a very modest increase in the CER MIC. As was
mentioned above, the change A237T did not produce changes in resistance
to the tested
-lactams, except for a decrease in the AM MIC and a
slightly decreased susceptibility to CE.
(ii) Double mutations. The double combination causing the greatest effect was found in TEM-10, which contained the changes R164S and E240K. This combination produced very dramatic increases in the MICs of CAZ and ATM, a smaller but significant decrease in CTX susceptibility, and slight decreases in the MICs of CER and CE. The addition of the A237T mutation to the R164S or the E240K mutation modestly decreased susceptibility to CTX and CE and decreased the MICs of CAZ and ATM.
(iii) Triple mutation (TEM-5).
The presence of the A237T
mutation in addition to the other two mutations (R164S and E240K)
changed the pattern of susceptibility to the tested
-lactams with
respect to that of TEM-10. TEM-10 conferred high CE, CAZ, and ATM MICs
(16, 128, and 16 µg/ml, respectively) and low-level resistance to CTX
(MIC, 0.5 µg/ml). The addition of mutation A237T (resulting in TEM-5)
increased the MICs of CTX and CE to 4 and 128 µg/ml, respectively,
but decreased the MICs of CAZ and ATM to 16 and 2 µg/ml,
respectively.
| |
DISCUSSION |
|---|
|
|
|---|
In the TEM enzymes, A237 is a substrate-binding residue that acts
by forming a hydrogen bond between the substrate and the protein
backbone (19). Binding of specific
-lactam antibiotics will be influenced differently by the A237T mutation because these antibiotics are differently constrained in the binding site. The rotation of the side chain of the threonine residue provides another hydrogen bond, which may facilitate the interaction of CTX with the
binding site. This type of situation has also been observed in a class
A
-lactamase of Proteus vulgaris, where the reverse type
of substitution, S237A, produces a decrease in activity on oxyimino-cephalosporins (20). It was previously reported
that the A237T replacement increases the cephem versus penam preference of TEM enzyme (9). Our results confirm this result for CER and AM but not for CTX. In the present study, the simultaneous presence
of the R164S and E240K mutations, in addition to that of the A237T
mutation, was required to significantly increase the CTX hydrolysis
rate.
In order to adapt to environmental fluctuations in antibiotic
challenges the plasticity of the TEM binding site allows the substrate
binding to be fine tuned by small changes. The possibility that the
activity against various
-lactams could be modulated could provide a
selective advantage to bacterial cells harboring extended-spectrum
TEM-type
-lactamases. By means of cross-infection in closed habitats
(typically in intensive care units) the same bacterial organism may
settle in different patients who were being treated with different
-lactams. Because of sequential bacterial infections in
immunosuppressed patients, treatment with different
-lactams,
perhaps changing from CTX or CE to CAZ or ATM, may create a fluctuating
selective environment.
The data presented here are consistent with the concept of mutation
saturation in enzymatic evolution proposed by Hartl et al.
(8). A neutral or nearly neutral mutation in a defined environment can be selected, and fixed, in a different environment in
which this mutation confers a selective advantage. The case of the
A237T change contained in TEM derivatives extends the hypothesis beyond
two defined environments (for which the mutation is neutral or
favorable) to an undefined number of fluctuating ones. TEM-10, the
naturally occurring derivative containing the mutations R164S and
E240K, confers a very high level of resistance to CAZ (128 µg/ml), a
medium level of resistance to CE (16 µg/ml), and a low level of
resistance to CTX (0.5 µg/ml). The presence of the mutation A237T in
TEM-5, another naturally occurring derivative, in addition to the other
two mutations optimizes a relatively high level of resistance to CAZ,
ATM, CE, and CTX. In this work we show that neutral, nearly neutral or
even deleterious (for a given environment) mutations can be fixed in
fluctuating environments, even though these mutations may decrease
bacterial fitness in some of these environments. New mutations
appearing in TEM-type
-lactamases must increase the host bacterial
cells' ability to survive in the strong counterselective forces of a
rapidly varying environment. Mutations such as A237T may buffer the
difficulties of maintaining the bacterial fitness of cells containing a
wild-type A237 in the presence of fluctuating challenges of CAZ, ATM,
CE, and CTX and perhaps of other
-lactam antibiotics not tested in
this work.
The results shown here strongly suggest that mutations resulting in
very weak phenotypic changes (or none for some substrates) in the
absence of other specific changes may play an important role in the
evolution and selection of derivative enzymes, with increased
activities against various substrates in highly fluctuating environments. The existence of the A237T mutation, and others previously defined as neutral or nearly neutral, in TEM
-lactamases could be explained by their contribution in modulating the substrate preference of the enzyme under yet-undefined variably selective challenges.
| |
ACKNOWLEDGMENTS |
|---|
We thank J. C. Pérez-Díaz for generous
technical support in his laboratory, A. Valencia and L. S. Pulido
for helpful and thoughtful discussions on
-lactamase structure, and
L. de Rafael and T. Coque for English corrections.
| |
FOOTNOTES |
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* Corresponding author. Mailing address: Servicio de Microbiología, Hospital Ramón y Cajal, Carretera de Colmenar Km 9.100, Madrid 28034, Spain. Phone: (34)-1-336 83 30. Fax: (34)-1-336 88 09 or -336 90 16. E-mail: jesus.blazquez{at}hrc.es.
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