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Antimicrobial Agents and Chemotherapy, July 1998, p. 1695-1701, Vol. 42, No. 7
0066-4804/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Fluconazole Resistance Associated with Drug Efflux and Increased
Transcription of a Drug Transporter Gene, PDH1, in
Candida glabrata
Haruko
Miyazaki,1
Yoshitsugu
Miyazaki,1
Antonia
Geber,1,2
Tanya
Parkinson,3
Christopher
Hitchcock,3
Derek J.
Falconer,3
Douglas J.
Ward,4
Katherine
Marsden,1 and
John E.
Bennett1,*
Clinical Mycology Section, Laboratory of
Clinical Investigation, National Institute of Allergy and Infectious
Diseases, National Institutes of Health,
Bethesda,1 and
Center for Biological
Evaluation and Research, Food and Drug Administration,
Rockville,2 Maryland;
Department of
Discovery Biology, Pfizer Central Research, Sandwich, United
Kingdom3; and
Dupont Circle Physicians
Group, Washington, D.C.4
Received 1 October 1997/Returned for modification 31 March
1998/Accepted 8 May 1998
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ABSTRACT |
Sequential Candida glabrata isolates were obtained from
the mouth of a patient infected with human
immunodeficiency virus type 1 who was receiving high doses
of fluconazole for oropharyngeal thrush. Fluconazole-susceptible
colonies were replaced by resistant colonies that exhibited both
increased fluconazole efflux and increased transcripts of a gene which
codes for a protein with 72.5% identity to Pdr5p, an ABC multidrug
transporter in Saccharomyces cerevisiae. The deduced
protein had a molecular mass of 175 kDa and was composed of two
homologous halves, each with six putative transmembrane domains and
highly conserved sequences of ATP-binding domains. When the earliest
and most azole-susceptible isolate of C. glabrata from this
patient was exposed to fluconazole, increased transcripts of the
PDR5 homolog appeared, linking azole exposure to regulation
of this gene.
 |
INTRODUCTION |
Failure of oropharyngeal
candidiasis (OPC) to respond to fluconazole has been noted in many
institutions, usually in patients with far advanced human
immunodeficiency virus (HIV) infection. The majority of
HIV-infected patients with fluconazole-unresponsive OPC have CD4 counts
below 50/mm3 and have received many months of azole therapy
(24, 33). Resistance has arisen gradually, the infection has
required higher and higher doses to respond, relapses have occurred
more rapidly, and response to therapy has been progressively less
complete. The gradual progression of resistance had suggested a series
of mutations, and molecular analysis of sequential Candida
albicans strains from such patients has supported this hypothesis
(27, 29, 34, 39).
Several findings indicate that increased azole efflux is a major
mechanism of resistance in C. albicans, Candida
glabrata, and Saccharomyces cerevisiae. Studies of
azole-resistant isolates have shown increased energy-dependent azole
efflux in C. glabrata (11, 17, 22),
decreased intracellular azole concentrations in C. albicans and C. glabrata (10, 11, 25),
and increased expression of the C. albicans
multidrug transporter genes CDR1, CDR2, and
MDR1 (1, 27, 30, 38). Inactivation of the
CDR1 gene in C. albicans (28) and
PDR5 in S. cerevisiae (31) leads to
increased fluconazole susceptibility and, in C. albicans, to increased intracellular fluconazole concentrations.
Another mechanism of azole resistance has been postulated to be
mutation of ERG3. The resultant defect in
5,6
desaturation is thought to prevent the cell from accumulating a toxic
14-
-methylergosta-8,24(28)-dien-3
,6
-diol in the
presence of azole (14).
There is also evidence supporting the hypothesis that azole
resistance may arise from chromosome duplications leading
to increased expression of ERG11
(ERG16), the gene which codes for the azole target enzyme,
lanosterol 14-
demethylase (CYP51A1) (17, 35). Mutations in ERG11 that apparently alter substrate
specificity may also cause azole resistance (12, 15, 29,
34). Identification of the key mutations which permit retention
of lanosterol demethylation and yet block the effects of azoles are
being defined (15, 29, 39).
Secondary resistance can arise during azole therapy by acquisition of a
drug-resistant strain of the same or different species. C. glabrata is inherently more resistant to fluconazole
than C. albicans and is found more commonly in patients
receiving azoles (26). Fluconazole resistance can increase
further in C. glabrata if the patient continues to
receive fluconazole (37).
We describe a patient with advanced HIV infection whose oral
candidiasis responded poorly to increasing doses of fluconazole. Oral
cultures contained a C. glabrata strain that
persisted and showed increased fluconazole resistance and increased
fluconazole efflux. Using homology with the PDR5 and
CDR1 genes, we cloned and sequenced a gene which appears to
code for a multidrug transporter and showed increased
transcription in the presence of fluconazole. The deduced amino acid
sequence has the highest identity to the S. cerevisiae
ATP-binding cassette transporter Pdr5p (Sts1p and Ydr1p)
(4). Because we have not proven that the gene will
confer the same phenotype as PDR5, we have chosen to
designate the gene PDH1 (for pleomorphic drug resistance
homolog) rather than PDR5. Many of the deduced amino acid
sequences in Pdh1p are highly conserved in other fungal ABC
transporters, including Yor1p and Snq2p (6) in
S. cerevisiae, Cdr1p (23), Cdr2p (30)
and Cdr3p (3) in C. albicans,
bfr1+p in Schizosaccharomyces pombe
(20), and Atrbp in Aspergillus nidulans
(7). To date, the gene family coding for these proteins has
not been studied in C. glabrata.
 |
MATERIALS AND METHODS |
Clinical isolates.
A 45-year-old male infected with HIV type
1 with a CD4 count of 60/mm3 and a 4-year history of
recurrent OPC was referred because of symptomatic thrush not responding
to 200 mg of fluconazole given daily. Discrete and confluent plaques of
thrush were evident on the hard palate and buccal mucosa. Microscopic
examination of Gram-stained smears from his mouth showed yeast and
pseudohyphae. Mouth culture grew C. albicans and
C. glabrata. The patient was first treated with 400 mg
of fluconazole given daily and seen every 2 weeks. After 4 weeks, he
had achieved only a partial response, with at least 20% of the lesions
remaining. Fluconazole was increased to 800 mg for 2 additional weeks,
after which only a small patch remained on his buccal mucosa and oral
symptoms had resolved. Therapy with 800 mg was continued an additional
2 weeks, after which no oropharyngeal lesions were detected.
Esophagoscopy was not done. Prophylaxis with fluconazole (200 mg daily)
was reinitiated, according to the study protocol. After 2 weeks, his
OPC had returned.
Oral specimens.
On each clinic visit, 2 weeks apart, the
patient had a culture from the mouth placed on CHROMagar Candida (Hardy
Diagnostics) (21). Five Candida colonies from
each primary culture were subcultured on YEPD medium (1% yeast
extract, 2% peptone, 2% glucose) at 30°C. Cells were suspended
in 50% glycerol in water and stored at
80°C. Colonies were
identified by germ tube formation in RPMI 1640 and then by use of the
API 20C kit (BioMerieux Vitek).
RAPD.
Both randomly amplified polymorphic DNA (RAPD) and a
contour-clamped homogeneous electric field (CHEF) were used to show
that the fluconazole-resistant isolates obtained later in the course were highly similar to the original C. glabrata strain
obtained from this patient. RAPD was synthesized in a 50-µl reaction
volume, using 25 ng of DNA, 5 mM Mg2+, 10 nmol of
deoxynucleoside triphosphate (Boehringer Mannheim), 50 ng of primer,
and 5 U of Taq DNA polymerase (Boehringer Mannheim) in 1×
Taq buffer (Boehringer Mannheim). PCR was performed by the method of Lehmann et al. (16), using a Perkin-Elmer Cetus
DNA thermal cycler model N801050, with 45 cycles, with 1 cycle
consisting of 1 min at 94°C, 1 min at 36°C, and 2 min at 72°C,
with a final elongation step at 72°C for 10 min. Following thermal
cycling, the amplified DNA was separated by electrophoresis in a 2%
(wt/vol) agarose (SeaKem GTG; FMC BioProducts) gel slab (11 by 14 by 1 cm) containing 0.5 µg/ml of ethidium bromide. A 1-kb DNA ladder (Gibco BRL) was included in each run. The primers used for RAPD were
primer S (5'-GCGATCCCCA-3') (oligonucleotide 6 of reference 32), primer 6 (5'-AAGGATCAGA-3' (RP-2 of
reference 16), and primer 7 (5'-CACATGCTTC-3')
(RP4-2 of reference 16).
CHEF.
Pulsed-field electrophoresis was performed with 0.8%
chromosomal grade agarose (Bio-Rad) in 0.5× TBE (45 mM Tris, 45 mM
borate, 1 mM EDTA; buffer pH 8.0) on gels (14 by 12.5 cm) using a
Bio-Rad electrophoresis chamber with a CHEF-DR 11 Drive Module
(Bio-Rad). Runs were done at 150 V with 120-s switch times ramped to
240 s over 25 h, followed by 180-s switch times ramped to
360 s over 20 h.
Cloning PDH1.
Degenerate primers H12 and H13 were
designed to amplify a 0.4-kb fragment, H1213, using genomic DNA of the
C. glabrata NCCLS84 as the template. Sequences of H12
and H13, shown in Table 1, were chosen on
the basis of amino acid sequences conserved in PDR5 and
CDR1, including a part of Walker A and B motifs.
Amplification was performed with Taq DNA polymerase
(Boehringer Mannheim) and a mini-thermal cycler (MJ Research) with 25 cycles, with 1 cycle consisting of 1 min at 94°C, 80 s at
48°C, and 1 min at 72°C. The amplified fragment was extracted
twice with equal volumes of phenol-chloroform and once with chloroform.
Fragments were blunt ended with T4 DNA polymerase (New England Biolabs)
treatment and inserted in pCR-Script SK(+) vector (Stratagene). The
JM109 strain of Escherichia coli (Promega) was transformed
with the constructed plasmid by heat pulses as described by the
supplier. Clones were sequenced by using a rhodamine terminator
sequencing reaction, run on an ABI Prism 377 (Perkin-Elmer). The base
sequence was analyzed with GCG (Genetics Computer Group) software. When the sequence was confirmed to have sufficient identity to
PDR5, the subcloned H1213 fragment was labeled with
32P using random priming and used as a probe to screen an
EcoRI-digested genomic library of the NCCLS84 strain of
C. glabrata (Lambda Zap II library made by Stratagene).
A 3.0-kb genomic fragment was identified, cloned into pBSK [Bluescript
II SK (+); Stratagene] as CGlib18 and sequenced by the method
described above. Since the sequence of the CGlib18 was shown to have
high homology to the 5' end of the PDR5 gene, a downstream
fragment was obtained by PCR, using NCCLS84 genomic DNA as
the template. One primer (H22) was based upon 3' sequences from
CGlib18. The other, a degenerate primer (H23) was based upon the
S. cerevisiae PDR5 sequence (Table 1). A 1.3-kb fragment
(H2223) was obtained, cloned into pCR-Script, and sequenced. A sense
primer (H32) was derived from the 3' sequence of H2223, and a
degenerate primer (H28) was obtained from S. cerevisiae PDR5 sequence. A 1.6-kb fragment (H3228) was obtained by PCR. H4546 was amplified from H3228. Southern blot of a Cla1 (New
England Biolabs) digest of NCCLS84 genomic DNA using H4546 as a probe hybridized to a single 3.6-kb fragment. A size-selected Cla1
genomic library was then made from NCCLS84, ligating the 2.5- to 4.5-kb fragments into the Cla1 site of pBSK. Using H4546 as a
probe, two 3.6-kb clones, Cla1-1 and Cla1-4, were identified by colony hybridization. Cla1-4 was sequenced in its entirety. This strategy is diagrammed in Fig. 1.

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FIG. 1.
Cloned fragments of the C. glabrata PDH1
gene. Cloned genomic fragments CGlib18 and Cla1-4 are shown (the
hatched areas indicate the ORFs). Five PCR subclones (H1213, H2223,
H3228, H4546, and H3058) are shown, and each is aligned to the
corresponding genomic sequence. Triangles at the end of PCR subclones
show degenerate primers.
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Probes for Southern and Northern blots.
A 0.85-kb PCR
fragment, H4546, was used for both Southern and Northern analyses. An
ACT1 probe was prepared as previously published
(8). A 25S rRNA-encoding sequence from C. albicans (18) was 32P labeled as a probe
for genes coding for rRNA (rDNA).
Southern analysis.
C. glabrata genomic DNA
was extracted from strain NCCLS84 as previously published
(8), digested with a restriction enzyme, and used in gel
electrophoresis. The gel was denatured (1 M NaCl, 0.5 M NaOH),
neutralized (1 M Tris-HCl [pH 7.5], 1 M NaCl) and transferred to a
nylon membrane (Hybond-N; Amersham). Chromosomal DNA run in CHEF gel
was first depurinated with 0.25 M HCl at room temperature for 20 min
and then transferred by the same procedure as for the digested genomic
DNA. Probes were randomly labeled with [
-32P]dCTP
(Amersham) using a Prime It II kit (Stratagene). The blot was
hybridized with the probe at 65°C, washed once with washing solution
1 (2× SSC [1× SSC is 0.15 M NaCl plus 0.015 M sodium citrate],
0.1% sodium dodecyl sulfate [SDS]) at room temperature, twice with
washing solution 2 (0.2× SSC, 0.1% SDS) at room temperature, and then
once at 65°C.
Northern analysis.
RNA was prepared from C. glabrata cells after sufficient growth in YEPD medium at 30°C to
provide an optical density at 600 nm of 1 to ~1.5. Cells were
harvested and washed with RPMI 1640 medium with 300 mg of
L-glutamine (Sigma) per liter, 0.165 M MOPS (morpholinepropanesulfonic acid) (Gibco BRL), and 2% glucose, pH 7.0. Cells were then rotated at 30°C for 4 h in the same RPMI 1640 medium with the addition of fluconazole (1 µg/ml). RNA was extracted
from 50 mg of cells using the FastRNA Kit (Bio 101). Gel
electrophoresis, blotting onto nylon membranes, and hybridization with
32P-labeled probes were done by standard methods, and the
blots were washed under the same conditions as those for the Southern blots.
Quantitation of signal intensities.
Southern and Northern
blots were exposed to Storage Phosphor Screens (Molecular Dynamics) for
3 h, and the screens were scanned with PhosphorImager 445 SI
(Molecular Dynamics). The scanned images were quantitated with
ImageQuant software (Molecular Dynamics). Quantitative volume data for
the same-sized rectangular square on the blot image with each probe
were used for analysis of the level of expression.
Other methods.
Intracellular fluconazole concentrations were
measured after 80 min of incubation in 100 nM
[3H]fluconazole (714 GBq/mmol) at 37°C with shaking at
170 rpm in phosphate-buffered saline (22). Cultures were
incubated with and without 100 µM carbonyl cyanide
m-chlorophenylhydrazone (CCCP). This compound is a
respiratory uncoupler which depletes intracellular stores of ATP. This
concentration of CCCP did not decrease cell viability (data not shown).
Specific activity of [3H]fluconazole was not sufficient
to measure efflux from energy-deprived cells after glucose loading so
this method was not used. MIC of fluconazole in microdilution broth was
read after 48 h of incubation at 35°C. Methods of sterol
analysis and antifungal susceptibility have been published elsewhere
(8). Fluconazole levels in blood were performed by bioassay
in the laboratory of Michael Rinaldi.
Nucleotide sequence accession number. The GenBank accession
no. for the C. glabrata PDH1 gene is AF046120.
 |
RESULTS |
Studies of fluconazole resistance.
Events that occurred to the
patient during study are summarized in Table
2. The concentrations of fluconazole in
blood were consistent with the prescribed dose. Of the five colonies
selected from mouth cultures on each of the six patient visits, two
C. glabrata and three C. albicans
isolates were obtained for study on all visits except those on weeks 6 and 8, when only C. glabrata colonies were detected on
the CHROMagar plates. The susceptibility of the C. glabrata isolates decreased to fluconazole and itraconazole, but
not to amphotericin B, during fluconazole treatment. C. glabrata colonies obtained on the same throat culture had
fluconazole MICs that were within 1 dilution of one another (data not
shown). The C. albicans isolates had an initial
fluconazole MIC of 8 µg/ml, much higher than our reference strain of
C. albicans (B311), which had an MIC of 0.25 µg/ml.
The last two C. albicans strains from this patient had
an MIC of 32 µg/ml. Interest focused on C. glabrata because this species was isolated on every occasion, even on week 8 when no lesions were apparent and a sharp increase in azole resistance
occurred after the first visit. The relative roles of C. glabrata and C. albicans in this patient's
disease cannot be ascertained, but the absence of C. albicans during clinical response suggests this species was the
major pathogen.
First, an attempt was made to establish whether the same strain
had persisted throughout the study period. RAPDs of the
C. glabrata isolates with three different sets of primers
remained
the same throughout treatment (Fig.
2A). CHEF analysis showed
that in the
earliest isolate the second largest chromosome was
smaller than in
subsequent isolates (Fig.
2B). The second isolate
obtained from this
patient also had a slightly smaller second
band. A
32P-labeled rDNA probe hybridized with the two largest
bands on
a CHEF blot of isolates 35a and 40a (data not shown),
indicating
that changes in the rDNA copy number may have accounted for
the
size difference. The other bands, with sizes below 1.6 Mb, were
unchanged. When conditions were changed to separate the smaller
bands
more clearly on the CHEF, no differences in the smaller
bands were seen
(data not shown). It was concluded that the earliest
two isolates
differed slightly from the other isolates, which
appeared
identical.

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FIG. 2.
(A) RAPD gel analysis of C. glabrata
DNA. Isolates were obtained at the start of the study (isolate 35a
[lanes 2, 5, and 8]), at 2 weeks (isolate 36a [lanes 3, 6, and 9]),
and at 4 weeks (isolate 37a [lanes 4, 7, and 10]). Primer S (lanes 2 to 4), primer 6 (lanes 5 to 7), and primer 7 (lanes 8 to 10) were used.
A molecular ladder is shown in lane 1. (B) CHEF gel using isolates from
weeks 0, 2, 4, 6, 8, and 10 (isolates 35a, 36a, 37a, 38a, 40a, and 43a,
respectively) are shown in lanes 2 to 7, respectively. The
Saccharomyces control is in lane 1.
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Nonesterified sterol analysis detected only ergosterol in the six
C. glabrata isolates (isolates 35a, 36a, 37a, 38a, 40a,
and 43a), indicating that altered membrane sterols could not account
for azole resistance. Increased
C. glabrata resistance
to fluconazole
has recently been reported to be associated with
increased energy-dependent
fluconazole efflux (
22). For this
reason, fluconazole intracellular
concentration was measured in
cultures that had been incubated
with or without 100 µM CCCP, a
respiratory uncoupler (Fig.
3).
In the
absence of CCCP,
C. glabrata isolates after the first
visit
showed markedly reduced intracellular fluconazole
concentrations.
CCCP increased intracellular fluconazole concentrations
in all
isolates, showing that energy-dependent drug efflux made a major
contribution to the observed differences in intracellular fluconazole
concentration. The initial isolate, isolate 35a, accumulated more
fluconazole both with and without CCCP, consistent with lesser
fluconazole efflux than the later isolates.

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FIG. 3.
Intracellular fluconazole concentrations. Isolates
Y33.90 and Y33.91 were azole-susceptible and -resistant C. glabrata isolates from the previous report (22).
Isolates 35a, 36a, 37a, 38a, 40a, and 43a were obtained at 0, 2, 4, 6, 8, and 10 weeks, respectively. Fluconazole accumulation without CCCP
(white bars) and with CCCP (black bars) is shown. The standard errors
are indicated by the error bars. OD600, optical density at
600 nm.
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Sequence of PDH1.
We obtained the complete
PDH1 sequence from two genomic clones, CGlib18 and
Cla1-4, which overlapped by 351 bp. Because
CGlib18 and Cla1-4 overlapped but differed by one base, we sequenced
the overlap area in another genomic clone, Cla1-1, and a PCR clone, H3058, that was directly amplified from genomic DNA with Vent DNA
polymerase (New England Biolab) (Table 1 and Fig. 1). All the new
clones gave the same sequence in the overlap area as Cla1-4. Analysis
of the 6,225-base sequence revealed a 4,626-bp open reading frame
(ORF) with 1,542 deduced amino acids. The deduced protein had a
molecular mass of 175 kDa. There was no adenine at the
3 position 5'
to the initiation ATG codon, although this has been invariant in
the modest number of C. glabrata genes cloned so far:
ERG3, ERG11, SNF1, TRP1,
HIS3, URA3, and SEC14. No intron splice sites or alternative ORF was found. In the 623-bp
5'-flanking region, there was a TATAA sequence at
105 and CAAT
sequences
365 and
136 from the ATG start site. Also in the putative
5' untranslated region was a 10-bp sequence identical to that described by Katzmann and coworkers for the S. cerevisiae PDR5
promoter (13). They described an 18-bp sequence which bound
Pdr1p and Pdr3p and was critical for PDR5 expression (13)
(Table 3). A palindrome that has been
postulated to be a regulatory cis element in the
PDR5 promoter was also found in the 5'-flanking sequence of
PDH1 (19) (Table 3). The sequence TTTGCA
is repeated four times between bases
468 and
502 5' to the
ATG codon. The significance of this repeat is unknown. In
the 3'-flanking sequence, two putative transcription termination
signals were found: the AATAAA signal of Henikoff et al.
(9) at +234 from the stop codon and the TAGN28TAGTN6TTT sequence of Zaret and Sherman
(40) at +175. In both the C-terminal and N-terminal
homologous halves of this molecule were ABC signatures and Walker
motifs (36) that are highly conserved among ABC
transporter proteins in S. cerevisiae (PDR5, SNQ2, and YOR1 [GenBank
accession no. L19922, X66732, and Z73066, respectively]),
C. albicans (CDR1, CDR2, and
CDR3 [GenBank accession no. X77589, U63812, and U89714,
respectively]) (Table 4). A
Kyte-Doolittle hydropathy plot (window = 7) indicated six
putative transmembrane domains in each of two homologous portions, similar to those reported in the transporter proteins listed in Table 4
(data not shown). Fasta search of the amino acid sequence (Fig.
4) retrieved PDR5 as the most
similar peptide with 72.5% identity in the 1,526-amino-acid
overlapping sequence. CDR1, a PDR5 homolog in
C. albicans, was shown to have 53.9% identity in
1,527-amino-acid sequence overlap. SNQ2, a S. cerevisiae gene closely related to PDR5, had 39.1%
identity in a 1,524-amino-acid overlap.

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FIG. 4.
Comparison of the amino acid sequences of
PDH1 and PDR5. For each pair of sequences, the
top sequence is PDH1 and the bottom one is PDR5.
Lines between the sequences indicate perfect matches of amino acids.
Periods and colons between the sequences show similarity based on the
Dayhoff table (30a) as described elsewhere (7a).
There was 72.5% identity between the two sequences, with two gaps.
Putative Walker A and B sites (double underlines) and putative
ATP-binding sites (single underline) are indicated.
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Southern and Northern analyses.
Southern analysis with the
H4546 probe showed a 1.8-kb band after EcoRV digestion. A
single band of about 10 kb was found on PstI digestion with
the same probe. Both findings are consistent with the restriction map
obtained from the sequence (Fig. 5). Considering that PDH1 appeared as a single fragment of the
anticipated size in Southern analysis, it was unlikely that the
PDH1 gene had a duplicate copy. By Northern analysis, using
phosphorimaging quantitation, transcription of PDH1 was
increased from a PDH1/ACT1 ratio of 3.5 to 32.3 when the
initial, more azole-susceptible strain, strain 35a, was incubated in
fluconazole. In strain 40a, transcription was not further increased by
fluconazole treatment, in that the PDH1/ACT1 ratio was
unchanged at 26.6 without and 24.1 with fluconazole exposure. The
PDH1/ACT1 ratio of strain 40a not exposed to fluconazole was
7.5 fold higher than that in strain 35a, indicating that
PDH1 was upregulated in the more azole-resistant strain. In
a separate Northern analysis, sequential isolates from the patient
given increasing doses of fluconazole showed a progressive increase in
PDH1 transcription in the absence of fluconazole (Fig. 6). The PDH1/ACT1 ratios in
these isolates, isolates 35a, 36a, 37a, 38a, and 40a, were 2.3, 2.7, 2.8, 3.4, and 4.5, respectively.

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FIG. 5.
Southern analysis and restriction map for
PDH1 gene. EcoRV digestion of C. glabrata genomic DNA demonstrated a single 1.8-kb fragment in the
Southern analysis as expected by the restriction map. PstI
digestion showed a single fragment of about 10 kb. The sequenced area
of the genome (white bar) and the PDH1 ORF (arrow) are
shown.
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FIG. 6.
Northern blots of PDH1 transcripts in our
series of C. glabrata strains. Actin transcripts were
used as controls for gel loading. The amount of PDH1
transcript relative to actin (ACT1) was higher in the
azole-resistant strains (strains 36a, 37a, 38a, and 40a) than in the
susceptible strain (strain 35a).
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Because increased ERG11 transcript in an azole-resistant
C. glabrata is attributable to a roughly fourfold
increase in copies
of a chromosome (
17), we
quantitated
PDH1 copy numbers using
ACT1 as a
control and found that the
PDH1/ACT1 ratios in isolates
35a
and 40a were almost equal, 1.6 and 1.7, respectively. A CHEF
blot
hybridized with the same
PDH1 probe demonstrated a band with
a size of about 1 Mb, based on the
S. cerevisiae standard.
The
ACT1 gene in
C. glabrata resides
on a 1.4-Mb chromosome (
17).
The increased
PDH1 mRNA in isolate 40a could not be attributed
to
increased gene copy number.
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DISCUSSION |
The patient when first seen had clinically apparent, symptomatic
OPC despite a history of taking 200 mg of fluconazole each day and a
blood level consistent with that history. Fluconazole susceptibility of
the C. glabrata isolate from this patient was not
different from our standard strain. It seems likely that the sudden
appearance of azole resistance in serial isolates did not represent a
strain change. RAPD patterns and all but the second CHEF band remained
unchanged. Serial isolates of C. glabrata from the same
patient often have shown variable bands with a size of >1.6 Mb,
generally the top two bands. Variability has been attributed to changes in the copy number of rDNA in these bands (2). We also found rDNA in our two largest bands.
The change in azole MIC of the C. glabrata strains
occurred when the fluconazole dose was increased. The more-resistant
strains had a two- to threefold decrease in intracellular
accumulation of fluconazole when incubated with radiolabeled
drug. A metabolic inhibitor increased intracellular drug,
indicative of active drug efflux. The failure of CCCP to increase
intracellular concentrations to the level seen in the more-susceptible
isolate may indicate that respiratory-independent mechanisms were also
present.
Although decreased intracellular drug concentration may not fully
explain a fourfold increase in fluconazole MIC, the change is
approximately equal to the difference between the
fluconazole-susceptible C. glabrata Y33.90 and the
resistant strain Y33.91. The difference in intracellular concentration
is also similar to that reported from five AIDS patients with
susceptible and resistant C. albicans isolated from
their oropharynx (27). The work reported here supports these
prior observations but differs in some respects. Strains Y33.90 and
Y33.91 gave different restriction fragment length polymorphism patterns
and were considered different strains (11). The change in
intracellular fluconazole concentrations reported here in a
C. glabrata strain and in the four sets of C. albicans strains reported by Sanglard et al.
(28) cannot be readily interpreted as simply strain
differences because molecular typing methods detected only a modest
difference. It appears more likely that increased drug efflux and
resistance arose in the original strain. Cross-resistance to other
azoles was found in our case, in the C. albicans-infected case reported by Hitchcock et al.
(10), and in the four C. albicans-infected
patients reported by Sanglard (28). Our report adds support
to the concept that increased drug efflux is a major mechanism of azole
resistance in C. glabrata. As noted in the introduction
of this article, highly resistant isolates may have multiple mutations,
particularly in the gene coding for the azole target enzyme,
14-
-demethylase. Increased azole resistance in our series of
C. glabrata isolates may also reflect such mutations as
well as the upregulation of ABC transporters.
It would be useful to identify the mutation which increased expression
of PDH1 in the isolates obtained after isolate 35a. One
possibility is increased PDH1 copy number. Marichal and
coworkers found a 3.7-fold increase in the copy number of
ERG11 (CYP51 and ERG16) in an
azole-resistant C. glabrata, accompanied by an 8-fold increase in ERG11 mRNA (17). Almost four copies
of the 740-kb chromosome were found, an aneuploid state which shifted
towards euploidy during multiple subcultures. In our azole-resistant
C. glabrata, there was no evidence of increased copy
number on Southern blots or by probing the CHEF blot with
PDH1 and ACT1. The latter gene was chosen for
probing the CHEF blot because ACT1 resides on a 1.4-kb band
(17), far larger than the chromosome containing PDH1. A more likely explanation for the increased expression
in the azole-resistant isolates is that a mutation in a transcriptional regulator locus caused azole resistance by overexpressing ABC transporters (5). If regulation of PDH1 were
analogous to regulation of PDR5, then fluconazole exposure
may affect a regulatory locus which increases expression of a family of
ABC transporter genes, including PDH1. The increase in
PDH1 mRNA when isolate 35a was exposed to fluconazole is
likely due to the same regulatory process. The 5'-flanking area of
PDH1 contained a sequence similar to one of the
PDR1/PDR3 binding sites which regulate PDR5
transcription in S. cerevisiae (13).
PDR1/PDR3 coregulates not only PDR5 but also
SNQ2 and YOR1, meaning that several genes
may be upregulated by fluconazole exposure and that the fluconazole
transporter may not be Pdh1p. Determining whether Pdh1p is a
fluconazole transporter will require disrupting the gene or expressing
the gene in a heterologous system, such as in a pdr5 S. cerevisiae mutant. Such studies are in progress. Whether or not
PDH1 codes for an azole transporter, this gene provides a
tool for studying the effects of azoles on regulatory loci controlling
ABC transporter expression in C. glabrata.
 |
ACKNOWLEDGMENT |
We thank B. Grimberg for technical assistance.
This work was supported in part by an unrestricted grant
from Pfizer, Inc.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Clinical
Center, rm. 11C304, NIH, Bethesda, MD. 20892. Phone: (301)
496-3461. Fax: (301) 480-0050. E-mail: jb46y{at}nih.gov.
 |
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