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Antimicrobial Agents and Chemotherapy, July 1998, p. 1845-1846, Vol. 42, No. 7
0066-4804/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.

Detection of Point Mutations in rpoB Gene of Rifampin-Resistant Rickettsia typhi

Jill Michelle Troyer,1 Suzana Radulovic,1 Siv G. E. Andersson,2 and Abdu F. Azad1,*

Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland,1 and Department of Molecular Biology, Uppsala University, Biomedical Center, Uppsala, Sweden2

Received 25 November 1997/Returned for modification 20 February 1998/Accepted 6 May 1998

    ABSTRACT
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The rpoB gene of rifampin-resistant Rickettsia typhi (Rif mutant) and wild-type R. typhi were sequenced and compared. The Rif mutant rpoB had three nucleotide substitutions, which resulted in amino acid changes at residues 151, 201, and 271 and may be the basis for the rifampin resistance.

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Rickettsia typhi, the causative agent of murine typhus, is transmitted to humans by fleas. Rickettsiae infect the host's endothelial cells and cause symptoms including rashes, severe headaches, fever, chills, hepatic and renal dysfunction, central nervous system abnormalities, and pulmonary compromise (2). Most cases are clinically mild, but severe and even fatal cases have been reported (1, 2). The recommended antibiotic regimen includes administration of doxycyline, tetracycline, or chloramphenicol (9). Here, we report the detection of a rifampin-resistant laboratory strain of R. typhi (Ethiopian) during the development of a transformation protocol for Rickettsia. The basis of resistance was investigated by sequencing and mapping point mutations in the rpoB gene of the mutant.

Renografin-purified R. typhi (Ethiopian, 108 PFU/ml) was subjected to electroporation in 100 µl of electroporation buffer (272 mM sucrose, 15% glycerol, which was filter sterilized [0.2-µm-pore-size filter; Millipore]) with a 0.1-cm gap cuvette (BTX Inc., San Diego, Calif.). The samples were electroporated at 2.5 kV, 200 Omega , and 25 µF, with a time constant of approximately 5 ms (nonelectroporated controls remained on ice). Immediately, 400 µl of cold SPG buffer (0.218 M sucrose, 0.0038 M KH2PO4, 0.0072 M K2HPO4, and 0.0049 M L-glutamate [pH 7.2]) was added to the cuvette. The electroporated R. typhi PFU were then grown in Vero cells in the presence of rifampin, chloramphenicol, doxycycline, or erythromycin (1, 2, 4, 8, or 100 µg/ml) (Sigma Chemical Co., St. Louis, Mo.) in Dulbecco modified Eagle medium and 1% fetal bovine serum at 34°C. After 8 days, samples were assayed for detection of Rickettsia by indirect fluorescent-antibody assay (7) with monoclonal antibody T62-3-A6 (mouse anti-R. typhi lipopolysaccharide, kindly provided by D. H. Walker, University of Texas Medical Branch at Galveston, Tex.) and by dye uptake assay (8) for antibiotic susceptibility.

Rifampin-resistant R. typhi (Rif mutant) was detected in the electroporated sample. The mutant, grown in the presence of 100 µg of rifampin per ml, infected 75% of the Vero cells by day 8 postinfection (approximately 109 bacteria/ml of culture). In contrast, 1.0 µg of rifampin per ml inhibited growth of wild-type R. typhi (Ethiopian) in the control groups (R. typhi with no electroporation). Rickettsial growth was not detected by indirect fluorescent-antibody assay on day 8 in these samples (data not shown). All R. typhi (with or without electroporation) incubated without rifampin infected approximately 75% of the Vero cells on day 8. The rifampin-resistant R. typhi isolate remained susceptible to chloramphenicol (MIC = 1 µg/ml), doxycycline (MIC = 1 µg/ml), and erythromycin (MIC = 2 µg/ml); these values are comparable to that for the susceptibility of wild-type R. typhi; therefore, electroporation did not affect the Rickettsia susceptibilities to these antibiotics.

Both the wild-type R. typhi (Ethiopian) rpoB gene and the Rif mutant (Ethiopian) rpoB gene were amplified by PCR, cloned, and sequenced. Primers (Table 1) were selected on the basis of the rpoB gene sequence of Rickettsia prowazekii (GenBank accession no. Z82356). The PCR included 10 µM each primer, 0.5 µg of R. typhi genomic DNA, 47 µl of PCR Supermix (Gibco), and an overlay of 50 µl of mineral oil. All reactions consisted of 25 cycles each, with an initial denaturing temperature of 94°C for 1 min, the specified annealing temperature (Table 1) for 90 s, and an extension temperature of 72°C for 2 min on a DNA thermocycler (Perkin-Elmer Cetus, Norwalk, Conn.). PCR products were cloned with the TA cloning kit (Invitrogen) and sequenced by the dye terminator method with an automated sequencer (model 373; Applied Biosystems, Foster City, Calif.). All gene segments were sequenced a minimum of two times (forward and reverse each time) to allow detection and elimination of errors in the sequencing process.

                              
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TABLE 1.   Oligonucleotide primers used for PCR amplification of the R. typhi rpoB gene

The sequences of wild-type and Rif mutant R. typhi rpoB genes were compared. The rpoB sequence was 4,127 bp, and identity between R. typhi and the R. typhi Rif mutant was approximately 99.8%. A total of eight nucleotide substitutions occurred, three of which resulted in amino acid substitutions in the Rif mutant RpoB: leucine for phenylalanine at residue 151, phenylalanine for leucine at residue 201, and valine for isoleucine at residue 271.

The mutations described in our study (residues 151, 201, and 271) do not correspond exactly to amino acid substitutions seen in rifampin-resistant Escherichia coli (4, 5, 10) or rifampin-resistant Mycobacterium spp. (3, 6, 11). However, identity of the rpoB gene between Rickettsia and rpoB of E. coli or Mycobacterium is less than 40%, so a direct correlation is not expected. Many of the amino acid substitutions in the RpoB of rifampin-resistant E. coli occur between residues 500 and 600. However, one rifampin-resistant E. coli isolate was characterized with an amino acid substitution at residue 146 of RpoB (5). This substitution is located closer to the R. typhi amino acid substitutions (residues 151, 201, and 271). At present, it is unclear if one or all three of the mutations are responsible for the rifampin resistance in R. typhi. In future research we will address this issue by mutating the rpoB genes in these specific areas and subsequently assessing rifampin sensitivity.

Nucleotide sequence accession number. The GenBank accession number for the wild-type R. typhi rpoB gene sequence is U73742.

    ACKNOWLEDGMENTS

This study was supported by the National Institutes of Health (grant AI-17828).

    FOOTNOTES

* Corresponding author. Mailing address: Department of Microbiology and Immunology, University of Maryland School of Medicine, Room 13-009, Bressler Research Building, 655 West Baltimore St., Baltimore, MD 21201. Phone: (410) 706-3335. Fax: (410) 706-0282. E-mail: aazad{at}umaryland.edu.

    REFERENCES
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1. Azad, A. F. 1990. Epidemiology of murine typhus. Annu. Rev. Entomol. 35:553-569[Medline].
2. Dumler, J. S., J. P. Taylor, and D. H. Walker. 1991. Clinical and laboratory features of murine typhus in south Texas, 1980 through 1987. JAMA 266:1365-1370[Abstract/Free Full Text].
3. Honore, N., and S. T. Cole. 1993. Molecular basis of rifampin resistance in Mycobacterium leprae. Antimicrob. Agents Chemother. 37:414-418[Abstract/Free Full Text].
4. Jin, D. J., and C. A. Gross. 1988. Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampin resistance. J. Mol. Biol. 202:45-58[Medline].
5. Lisitsyn, N. A., E. D. Sverdlov, E. P. Moiseyeva, O. N. Danilevskaya, and V. G. Nikiforov. 1984. Mutation to rifampin resistance at the beginning of the RNA polymerase beta subunit gene in Escherichia coli. Mol. Gen. Genet. 196:173-174[Medline].
6. Miller, L. P., J. T. Crawford, and T. M. Shinnick. 1994. The rpoB gene of Mycobacterium tuberculosis. Antimicrob. Agents Chemother. 38:805-811[Abstract/Free Full Text].
7. Philip, R. N., E. A. Casper, W. Burgdorfer, R. K. Gerloff, L. E. Hughes, and E. J. Bell. 1975. Serological typing of rickettsiae of the spotted fever group by microimmunofluorescence. J. Immunol. 121:1961-1968[Abstract/Free Full Text].
8. Radulovic, S., J. A. Higgins, D. C. Jaworski, and A. F. Azad. 1995. In vitro and in vivo antibiotic susceptibilities of ELB rickettsiae. Antimicrob. Agents Chemother. 39:2564-2566[Abstract].
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10. Sakakibara, Y. 1995. Suppression of thermosensitive initiation of DNA replication in a dnaR mutant of Escherichia coli by a rifampin resistance mutation in the rpoB gene. J. Bacteriol. 177:733-737[Abstract/Free Full Text].
11. Williams, D. L., C. Waguespack, K. Eisenach, J. T. Crawford, F. Portaels, M. Salfinger, C. M. Noaln, C. Abe, V. Sticht-Groh, and T. P. Gillis. 1994. Characterization of rifampin-resistance in pathogenic mycobacteria. Antimicrob. Agents Chemother. 38:2380-2386[Abstract/Free Full Text].


Antimicrobial Agents and Chemotherapy, July 1998, p. 1845-1846, Vol. 42, No. 7
0066-4804/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.



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