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Antimicrobial Agents and Chemotherapy, November 1999, p. 2624-2628, Vol. 43, No. 11
0066-4804/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Involvement of an Active Efflux System in the
Natural Resistance of Pseudomonas aeruginosa to
Aminoglycosides
Julio Ramos
Aires,1
Thilo
Köhler,2
Hiroshi
Nikaido,3 and
Patrick
Plésiat1,*
Department of Bacteriology, Centre
Hospitalier Universitaire, F-25030 Besançon,
France1; Department of Genetics and
Microbiology, Centre Médical Universitaire, Geneva,
Switzerland2; and Department of
Molecular and Cell Biology, University of California, Berkeley,
California 947203
Received 26 April 1999/Returned for modification 18 June
1999/Accepted 18 August 1999
 |
ABSTRACT |
A mutant, named 11B, hypersusceptible to aminoglycosides,
tetracycline, and erythromycin was isolated after Tn501
insertion mutagenesis of Pseudomonas aeruginosa PAO1.
Cloning and sequencing experiments showed that 11B was deficient in an,
at that time, unknown active efflux system that contains homologs of
MexAB. This locus also contained a putative regulatory gene,
mexZ, transcribed divergently from the efflux operon.
Introduction of a recombinant plasmid that carries the genes of the
efflux system restored the resistance of 11B to parental levels,
whereas overexpression of these genes strongly increased the MICs of
substrate antibiotics for the PAO1 host. Antibiotic accumulation
studies confirmed that this new system is an energy-dependent active
efflux system that pumps out aminoglycosides. Furthermore, this system
appeared to function with an outer membrane protein, OprM. While the
present paper was being written and reviewed, genes with a sequence
identical to our pump genes, mexXY of P. aeruginosa, have been reported to increase resistance to
erythromycin, fluoroquinolones, and organic cations in
Escherichia coli hosts, although efflux of aminoglycosides
was not examined (Mine et al., Antimicrob. Agents Chemother.
43:415-417, 1999). Our study thus shows that the MexXY system plays an
important role in the intrinsic resistance of P. aeruginosa
to aminoglycosides. Although overexpression of MexXY increased the
level of resistance to fluoroquinolones, disruption of the
mexXY operon in P. aeruginosa had no detectable
effect on susceptibility to these agents.
 |
INTRODUCTION |
Multidrug active efflux systems have
recently been recognized as efficient mechanisms of resistance in
P. aeruginosa. For example, the MexAB-OprM system, which is
expressed constitutively in wild-type cells, contributes greatly to the
natural resistance of the pathogen to a wide range of antibacterial
agents including
-lactams,
-lactamase inhibitors, quinolones,
chloramphenicol, tetracycline, trimethoprim, sulfamethoxazole, and
novobiocin (13, 17, 18, 21, 22, 28). Furthermore, MexAB-OprM
may confer high levels of resistance to clinical strains when it is
overexpressed as a result of mutations that occur mainly in the
mexR regulatory gene (34).
Two other systems, namely, MexCD-OprJ and MexEF-OprN, which are
homologous to MexAB-OprM but which are not constitutively produced in
wild-type cells of P. aeruginosa, have also been reported to
be involved in the multidrug resistance of laboratory mutants (6,
10, 14, 27) and clinical strains (7, 11). The latter
efflux pumps, which display more restricted antibiotic substrate
spectrums than MexAB-OprM, are still able to accommodate compounds as
structurally different as quinolones, chloramphenicol, and trimethoprim
(6, 10, 14, 20, 22, 26).
Up to the present, RND-type efflux systems of P. aeruginosa
were believed to transport only lipophilic or amphiphilic compounds since very hydrophilic antibiotics such as aminoglycosides were not
substrates of the already known pumps. Yet, P. aeruginosa strains usually show significant intrinsic levels of resistance to
aminoglycosides. We therefore looked for a possible aminoglycoside efflux pump in P. aeruginosa by first isolating an
aminoglycoside-hypersusceptible mutant and by then looking for genomic
clones that could restore resistance in this mutant. We identified a
new homolog of MexAB-MexCD-MexEF systems and then showed directly that
this new system pumps out aminoglycosides. While the present work was
being reviewed, a paper by Mine et al. (23) appeared. That
paper described P. aeruginosa genomic clone
mexXY, which was shown to increase levels of resistance to
fluoroquinolones, erythromycin, and ethidium bromide in
Escherichia coli host cells. This system was found to
function cooperatively with OprM, the outer membrane component of
MexAB-OprM, for the export of substrate antibiotics in E. coli. Mine et al. (23), however, did not examine the
effect of MexXY on aminoglycoside resistance, nor did they study the
function of this system in P. aeruginosa. In this paper we
provide evidence that MexXY plays a crucial role in the intrinsic
resistance of P. aeruginosa to aminoglycosides.
 |
MATERIALS AND METHODS |
Bacterial strains, media, and growth conditions.
Wild-type
strain P. aeruginosa PAO1 was from B. W. Holloway's
culture collection. PAO1T is an oprM::
Hg
derivative of PAO1 obtained by transduction (22); PAM1275 is
a mexB::
Hg mutant of PAO1 (18a).
P. aeruginosa MT350 (met-9020 catA1 nar-9011 cnu-9001 puuE8 tyu-9025 rif-8003) was used as a donor for the conjugational transfer of plasmid pMT1000 to PAO1 (32). DNA manipulations were performed with E. coli DH5
[supE44 endA1
hsdR17 (rk
mk+)
thi-1 recA1
(argF-lac zya) U169
80
lacZ
M15], which was obtained from Gibco BRL. Strains of
E. coli and P. aeruginosa were grown in
Luria-Bertani broth (LB) or on Mueller-Hinton (MH) agar plates (Sanofi
Pasteur Diagnostics). When necessary, ampicillin (Ap; 100 µg
ml
1), kanamycin (25 µg ml
1), and
tetracyline (30 µg ml
1) for E. coli or
ticarcillin (Tic; 250 µg ml
1) and mercuric chloride (15 µg ml
1) for P. aeruginosa were added to the
growth media. All bacterial cultures in LB were incubated at 37°C
with shaking (200 rpm). As specified below, some mating experiments
were done with the minimal agar medium of Davis and Mingioli
(4) supplemented with 0.5% (wt/vol) glucose for selection
of PAO1 transconjugants.
DNA methodology.
Chromosomal DNA was prepared by the
procedure of Chen and Kuo (3). Genomic libraries were
constructed with restricted DNA fragments that were selected for the
appropriate size (10 to 20 kbp) on 10 to 40% (wt/vol) linear sucrose
gradients and that were subsequently ligated with a plasmid vector.
Electrotransformation of E. coli DH5
(5) and
P. aeruginosa (31) with plasmid DNA has been
described in detail elsewhere. Plasmid DNA was routinely prepared by
the alkaline lysis procedure (29) or by using Plasmid Midi
Preps kit from Qiagen S.A. Selected restriction fragments were purified
from agarose gels with the Jet-Sorb kit (Genome Inc.). Probes used in
Southern and colony blotting experiments were labeled by random priming
(Amersham) with [
-32P]dCTP (Dupont NEN) by following
the manufacturer's instructions. DNA hybridization and autoradiography
were performed under standard conditions (29). Other
reagents for molecular biology procedures were purchased from Gibco
BRL, Stratagene Inc., or Sigma Chemical Co.
Transposon mutagenesis with pMT1000.
Tn501
tagging of the P. aeruginosa PAO1 chromosome was carried out
with pMT1000, a plasmid that was derived from
R68::Tn501 and that is temperature sensitive for
replication and maintenance (32). Insertional mutants of
PAO1 were selected on minimal glucose agar medium containing 15 µg of
HgCl2 ml
1 at 42°C after conjugational
transfer of pMT1000 from donor strain MT350 at 30°C. A total of 6,200 Tn501 mutants were isolated and were subsequently tested for
resistance or hypersusceptibility to aminoglycosides by individual
replication on MH plates containing 0.5 or 16 µg of amikacin
ml
1.
Plasmid constructions.
The recombinant plasmids used in this
study were obtained as follows. Insertion of transposon
Tn501 in the chromosome of mutant 11B was confirmed by
Southern hybridization of a 1-kbp radiolabeled PCR product that
encompasses the mercuric reductase gene (merA) of
Tn501 with BamHI- and
HindIII-restricted fragments of the mutant 11B genome. A
BamHI-HindIII genomic DNA library from mutant
11B was then constructed in E. coli DH5
with the
versatile plasmid vector pUC18 (Apr) (33) and
was screened with the merA probe. Restriction mapping of
positive clones revealed the presence of a 12.8-kbp insert consisting
of a 4.6-kbp fragment from the mutant 11B chromosome adjacent to the
8.2-kbp transposon Tn501. The resultant recombinant vector
was named pJR162. A 4.3-kbp EcoRI fragment from pJR162 was
subcloned into phagemid pBlueScript KSII+ (Apr;
Stratagene Inc.) to give pJR49. A 1.2-kbp internal
SalI-NotI fragment from pJR49, selected from a
set of 150- to 250-bp nested deletions produced with exonuclease III
for sequence determination (see below), was used as a new probe to
screen a BamHI-NotI genomic DNA library from PAO1
cloned into pBlueScript KSII+. One E. coli
DH5
-positive transformant was selected for further studies and was
shown to contain a 4.1-kbp fragment from the PAO1 genome in recombinant
plasmid pJR41. A 3-kbp NotI fragment from pJR49 (the second
NotI cleavage site is located in the polylinker of
pBlueScript KSII+) was isolated by agarose gel
electrophoresis and was subcloned into pJR41 to obtain pJR100, a
plasmid that carries the mexZ, mexX, and
mexY genes. Then, pJR120 (see Fig. 1) was constructed by
excision of the whole 7-kbp insert of pJR100 and recloning into the
broad-host-range vector pAK1900 (Apr Ticr)
(28). Finally, a 5-kbp EcoRV-EcoRI
fragment from pJR100 that contained mexXY but not
mexZ was subcloned into pBlueScript SKII+ to
obtain pBGH80; a 5-kbp HindIII-XbaI fragment
of this construct was recloned into pAK1900 to yield pAGH97 (see Fig.
1).
DNA sequencing and protein analysis.
Unidirectional
deletions of ca. 150 to 250 bp were produced from the BamHI
site located in the polylinker of pJR49 by using exonuclease III and S1
nuclease (Nested Deletion Kit from Pharmacia Biotech). Sequencing was
performed from the universal primer sequences of the plasmid vector.
The 4.1-kbp BamHI-NotI insert of pJR41 was
sequenced by using custom primers (Eurogentec S.A.). Nucleotide sequences of the overlapping fragments were determined on both strands
by the dideoxy-chain determination method (30) with a 373A
DNA Sequencer (Perking-Elmer Division, Applied Biosystems) at the
Institut d'Etude et de Transfert de Gènes in Besançon, France. DNA sequences were edited with Navigator software
(Perkin-Elmer). Searches for protein sequence homologies were carried
out by using the BLAST program (1) provided by the National
Center for Biotechnology Information. Open reading frames (ORFs) and
predicted protein domains were established with the DNAStrider 1.0.1. program.
Assays for accumulation in intact cells.
The accumulation
assays were performed as described by Li et al. (16) with
exponentially growing bacteria. [3H]dihydrostreptomycin
(specific activity, 20 Ci mmol
1) and
[3H]tetracycline (0.55 Ci mmol
1) were from
American Radiolabeled Chemicals, Inc. (St. Louis, Mo.). Radioactivity
was quantitated with an Intertechnique SL30 liquid scintillation counter.
Antimicrobial susceptibility testing.
Bacterial
susceptibilities to antimicrobial agents were determined by the
standard broth microdilution method (2) in MH broth adjusted
to 20 mg of Ca2+ liter
1 and 10 mg of
Mg2+ liter
1 with inocula of 5 × 105 bacteria ml
1. Chemicals and antibiotics,
if not specified, were from Sigma Chemical Co. The following
antibiotics were kindly provided by the indicated manufacturers:
isepamicin, netilmicin, and gentamicin, Schering-Plough; amikacin,
Bristol-Myers Squibb; tobramycin, Lilly Laboratories; erythromycin,
Abbott Laboratories; ciprofloxacin, Bayer Pharma; norfloxacin, Merck
Sharpe & Dohme.
Nucleotide sequence accession numbers.
The DNA sequences of
the genes described in this study were deposited in the GenBank
database under the name mexZGH (accession no. AF073776; 22 June 1998), prior to the submission of the mexXY genes
(accession no. AB 015853; 25 June 1998). Despite the earlier submission
of mexZGH, we have adopted here the designation mexXY proposed by Mine et al. (23) to avoid
further confusion.
 |
RESULTS AND DISCUSSION |
Isolation of a mutant hypersusceptible to aminoglycosides.
Reference strain PAO1 was mutagenized by random insertion of
Tn501. Replication of 6,200 HgCl2r
clones on selective agar plates containing different concentrations of
amikacin led to the identification of three mutants unable to grow on
0.5 µg of amikacin ml
1 (the MIC of amikacin for PAO1
was 2 µg ml
1). One of them, named mutant 11B, was found
to be hypersusceptible to erythromycin, tetracycline, and
aminoglycosides (MICs were lowered four- to eightfold) and was selected
for further investigation (Table 1). On
the otherhand, mutant 11B demonstrated wild-type levels of resistance
to ciprofloxacin, norfloxacin, chloramphenicol, trimethoprim,
acriflavine, ethidium bromide, and 25 other antimicrobial agents (data
not shown).
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TABLE 1.
Antibiotic susceptibilities of various P. aeruginosa strains that are deficient in or that overexpress the
mexZ and mexXY genes
|
|
Mutant 11B is deficient in MexXY.
A 7-kbp genomic fragment
from strain PAO1 that encompassed the Tn501 insertion site
of mutant 11B was cloned into E. coli as described in
Materials and Methods. Sequencing of this 7-kbp DNA fragment revealed
the presence of three complete ORFs (Fig. 1). ORF1 (1,191 bp) and ORF2 (3,135 bp)
showed strong sequence similarity to multidrug efflux systems based on
the RND family of transporters, such as AmrAB, which is responsible for
aminoglycoside resistance in Burkholderia pseudomallei (51 and 65% identities, respectively) (24), and MexAB of
P. aeruginosa (33 and 46% identities, respectively). The
sequence was deposited in the data bank as mexGH (see
Materials and Methods). We have most recently learned, however, that an
identical sequence, mexXY, has subsequently been deposited
in the data bank. Because the paper that describes mexXY has
been published earlier (23), we will adopt here the
nomenclature of Mine et al. and call ORF1 and ORF2, mexX and
mexY, respectively. Our sequencing data clearly showed that
mutant 11B owes its antibiotic hypersusceptibility phenotype to the
disruption of mexXY
(mexX::Tn501; Fig. 1). These results
provide good evidence that MexXY is produced constitutively in
wild-type cells of P. aeruginosa, where it contributes to
intrinsic resistance to aminoglycosides.

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FIG. 1.
Physical map of the mexZXY operon in P. aeruginosa. Inserts of recombinant plasmids pJR120 and pAGH97 are
indicated. The site of insertion of transposon Tn501 in
mutant 11B is indicated with an arrowhead.
|
|
Identification of mexZ.
The third ORF (ORF3), identified
263 bp upstream of but transcribed divergently from ORF1
(mexX), was found to contain 534 nucleotides and to encode a
protein of 178 amino acid residues with a predicted molecular mass of
19,369 Da. The protein is a homolog of AmrR (41% identity and 50%
similarity), the putative repressor of the amrAB-oprA
operon from B. pseudomallei. Lower but still significant
scores were also obtained with the MtrR protein which negatively
controls the expression of the mtrCDE operon in
Neisseria gonorrhoeae (8), and with the putative repressors of acrAB and acrEF operons in E. coli (18 and 21% identities and 35 and 37% homologies,
respectively) (12, 19). The ORF3 product, designated MexZ,
displays a helix-turn-helix motif characteristic of DNA binding domains
at its N terminus. This domain was found to be highly conserved among
MexZ, AcrR, AcrS, MtrR, and AmrR (data not shown). Several possible
promoter sequences that showed some homology with the
35 and
10
consensus regions of E. coli promoters were pinpointed
upstream of ORF3. Examination of the intergenic region that extends
between ORF1 and ORF3 also allowed the detection of an inverted repeat
sequence 20 bp ahead of ORF3, similar to that which precedes
mtrR, the regulatory gene that encodes the MtrR protein in
N. gonorrhoeae (identity of 10 of 13 nucleotides)
(9). Altogether these results strongly support the notion
that mexZ controls the expression of the mexXY operon.
MexXY exports aminoglycosides.
Mine et al. (23)
have shown that MexXY actively pumps ethidium bromide out of E. coli cells transformed with the cloned mexXY operon. To
unambiguously demonstrate that this efflux system is also involved in
the transport of aminoglycosides, accumulation assays with
[3H]dihydrostreptomycin were carried out with PAO1 and
its hypersusceptible mutant, mutant 11B. Steady-state accumulation of
the antibiotic in PAO1 was about 2.5-fold lower than that in mutant 11B
(Fig. 2). Addition of the proton
conductor carbonyl cyanide m-chlorophenylhydrazone (CCCP;
500 µM) to the cells prior to the uptake experiments did not,
however, significantly increased the level of accumulation of
[3H]dihydrostreptomycin (data not shown). A similar
observation was reported by Moore et al. (24) with B. pseudomallei cells that express AmrAB-OprA. Such a phenomenon is
likely to result from the complex inhibitory action of CCCP on both the
active inward transport of the aminoglycoside across the cytoplasmic membrane and its efflux via MexXY (or AmrAB-OprA). We checked that
MexXY is able to export tetracycline from P. aeruginosa by using a mexB null mutant (strain PAM1275) to circumvent
efflux of the antibiotic by the MexAB-OprM system (Fig.
3). In this case, CCCP inhibited the
energy-dependent efflux process mediated by MexXY and caused an
increased level of accumulation of tetracycline.

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FIG. 2.
Accumulation of [3H]dihydrostreptomycin by
intact cells of P. aeruginosa PAO1 ( ) and mutant 11B
( ). The MICs of dihydrostreptomycin for PAO1 and mutant 11B were 16 and 4 µg ml 1, respectively. The cells were grown in LB,
harvested, washed (50 mM phosphate buffer, 100 mM LiCl), and
resuspended in 50 mM of phosphate buffer (pH 7) containing 1 mM
MgSO4 and 0.2% (wt/vol) glucose as a source of carbon.
After 5 min at 37°C, a mixture of dihydrostreptomycin and
[3H]dihydrostreptomycin (20 Ci mmol 1) was
added to a final concentration of 8 µg ml 1; and the
samples were taken and filtered, and the radioactivity was counted. The
data are means for three independent experiments.
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|

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FIG. 3.
Accumulation of [3H]tetracycline by intact
cells of P. aeruginosa PAM1275 ( , ) and
PAM1275(pAGH97) ( , ). The MICs of tetracycline for PAM1275 and
PAM1275(pAGH97) were 2 and 16 µg ml 1, respectively. The
cells were prepared as described in the legend to Fig. 2. After 5 min
at 37°C, a mixture of tetracycline and [3H]tetracycline
(0.55 Ci mmol 1) was added to a final concentration of 2 µg ml 1; and the samples were taken and filtered, and
the radioactivity was counted. After 7.5 min of incubation, a 500 µM
final concentration of CCCP was added to one-half of the reaction
mixture. Accumulation in CCCP-treated samples is represented by open
symbols, and that in samples that did not receive CCCP is indicated by
closed symbols. The data are means for three independent experiments.
No modification of intracellular accumulation of antibiotic was
observed when strains were transformed with pAK1900.
|
|
Overexpression of mexXY in P. aeruginosa.
In
order to investigate the effects of overproduced MexXY on resistance
levels, mutant 11B and its parent strain, PAO1, were transformed with
pJR120, a recombinant plasmid carrying the mexZXY genes. The
MICs of representative antibiotics for both strains, mutant 11B and
strain PAO1, are presented in Table 1. While the resistance to
aminoglycosides, tetracycline, and erythromycin was restored to
parental levels in mutant 11B following the introduction of pJR120 (two
to four times the MICs, that of PAO1 remained unchanged. The lack of
influence of pJR120 on PAO1 resistance is consistent with the
hypothesis that mexZ downregulates the expression of mexXY (see above). Transformation of 11B and PAO1 with
plasmid pAGH97 (mexXY only; Fig. 1) produced substantial
increases in the levels of resistance of both strains to substrate
antibiotics (4 to 128 times the MICs), thus providing further evidence
that overexpression of MexXY may determine multidrug resistance in P. aeruginosa. The MICs of fluoroquinolones, ciprofloxacin,
and norfloxacin were also raised noticeably (16 times the MIC).
OprM is functional with MexXY for export of aminoglycosides.
It has recently been reported that OprM, the outer membrane component
of the MexAB-OprM efflux system, may also be used by the MexXY proteins
for the export of fluoroquinolones and various inhibitors
(23). To gain some insight into the nature of components that may allow highly hydrophilic, polycationic antibiotics such as
aminoglycosides to cross the outer membrane while they are exported by
the MexXY system, we introduced plasmid pAGH97 into the
oprM::
Hg PAO1 derivative PAO1T. In striking
contrast to its OprM-proficient parent PAO1, no signifiant increase in
resistance to aminoglycosides was noted for PAO1T when it was
transformed with pAGH97 (Table 1). On the other hand, complementation
of PAO1T(pAGH97) with the intact oprM gene carried on
plasmid pOMI5 (34) resulted in multidrug resistance at
levels similar to those exhibited by PAO1(pAGH97). Consistent with
these data, deficiency in OprM (mutant PAO1T) rendered PAO1 cells more
susceptible to aminoglycosides (Table 1). Thus, OprM appears to be used
by both the MexAB and the MexXY machineries in wild-type cells for the export of a wide variety of compounds including aminoglycosides.
Role of MexXY in resistance of P. aeruginosa.
Although
the physiological functions of bacterial efflux systems still remain
unclear (25), it is interesting that the constitutive expression of two complementary multidrug transporters, MexAB-OprM and
MexXY, in P. aeruginosa provides this organism with natural protection against an incredibly wide range of antibacterial molecules. MexAB-OprM contributes significantly to the intrinsic resistance to
-lactams (except imipenem [15]), fluoroquinolones,
tetracyclines, and chloramphenicol (17, 21, 28), whereas
MexXY plays an important role in the defense of the bacterium against
aminoglycosides (and, to a lesser extent, tetracycline and
erythromycin). By contrast, the involvement of MexXY in the natural
resistance of P. aeruginosa to fluoroquinolones appears
negligible (see mutant 11B, Table 1), even if this system can export
these antibiotics (23).
Overexpression of MexAB-OprM has recently been shown to confer
clinically relevant levels of resistance to

-lactams in strains
isolated from hospitalized patients (
34). Whether the
overexpression
of MexXY may be responsible for higher levels of
resistance to
aminoglycosides and fluoroquinolones in the clinical
setting warrants
further
investigations.
 |
ACKNOWLEDGMENTS |
We thank Colette Godard and Karine Joseph for technical
assistance and O. Lomovskaya for supplying strain PAM1275. We are also
grateful to the Pseudomonas Genome Project for providing the
PAO1 chromosome sequence on-line (28a).
This work was supported by the Association Française de Lutte
contre la Mucoviscidose, research grant AI-09644 from the National Institutes of Health, and a grant from France-Berkeley fund.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratoire de
Bactériologie, Hôpital Jean Minjoz, 25030 Besançon
cedex, France. Phone: (33) 3 81 66 82 86. Fax: (33) 3 81 66 89 14. E-mail: patrick.plesiat{at}ufc-chu.univ-fcomte.fr.
 |
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