Previous Article | Next Article 
Antimicrobial Agents and Chemotherapy, June 1999, p. 1350-1357, Vol. 43, No. 6
0066-4804/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Characterization and Nucleotide Sequence of a Klebsiella
oxytoca Cryptic Plasmid Encoding a CMY-Type
-Lactamase:
Confirmation that the Plasmid-Mediated Cephamycinase Originated from
the Citrobacter freundii AmpC
-Lactamase
Shang Wei
Wu,1,2,3,*
Kathrine
Dornbusch,1
Göran
Kronvall,1 and
Mari
Norgren3
Department of Laboratory Medicine, Division
of Clinical Microbiology, Karolinska Institute and Karolinska Hospital,
171 76 Stockholm,1 and Department of
Clinical Bacteriology, Umeå University, S-901 85 Umeå,3 Sweden, and Laboratory of
Microbiology, The Rockefeller University, New York, New York
100212
Received 10 September 1998/Returned for modification 4 January
1999/Accepted 12 March 1999
 |
ABSTRACT |
Plasmid pTKH11, originally obtained by electroporation of a
Klebsiella oxytoca plasmid preparation into
Escherichia coli XAC, expressed a high level of an
AmpC-like
-lactamase. The enzyme, designated CMY-5, conferred
resistance to extended-spectrum
-lactams in E. coli;
nevertheless, the phenotype was cryptic in the K. oxytoca
donor. Determination of the complete nucleotide sequence of pTKH11
revealed that the 8,193-bp plasmid encoded seven open reading frames,
including that for the CMY-5
-lactamase
(blaCMY-5). The
blaCMY-5 product was similar to the plasmidic
CMY-2
-lactamase of K. pneumoniae and the chromosomal
AmpC of Citrobacter freundii, with 99.7 and 97.0%
identities, respectively; there was a substitution of phenylalanine in
CMY-5 for isoleucine 105 in CMY-2. blaCMY-5 was
followed by the Blc and SugE genes of C. freundii, and this cluster exhibited a genetic organization
identical to that of the ampC region on the chromosome of
C. freundii; these results confirmed that C. freundii AmpC was the evolutionary origin of the plasmidic
cephamycinases. In the K. oxytoca host, the copy number of
pTKH11 was very low and the plasmid coexisted with plasmid pNBL63.
Analysis of the replication regions of the two plasmids revealed 97%
sequence similarity in the RNA I transcripts; this result implied that
the two plasmids might be incompatible. Incompatibility of the two
plasmids might explain the cryptic phenotype of
blaCMY-5 in K. oxytoca through an
exclusion effect on pTKH11 by resident plasmid pNBL63.
 |
INTRODUCTION |
Extended-spectrum
-lactamases
cause bacterial resistance to
-lactam antibiotics and contribute to
therapeutic problems (16). Many of them are plasmid mediated
and confer resistance to oxyimino-
-lactams, such as cefotaxime,
ceftazidime, and the monobactam aztreonam (16).
Plasmid-mediated
-lactamases are often expressed in large amounts
and are encoded by transposons which can be easily transferred from one
replicon to another (15). Chromosomally encoded
-lactamases are present in most gram-negative bacteria; these
enzymes are often expressed at low levels and therefore may not
contribute to clinical
-lactam resistance (22).
Additionally, plasmid-mediated
-lactamases, such as MIR-1, CMY-1,
and CMY-2, with high isoelectric points and cephalosporinase activity
have been described (2, 4, 26). These findings have raised
concern that chromosomal
-lactamases may cause serious therapeutic
problems if their genes are translocated onto plasmids.
In previous studies (41, 42), a group of Klebsiella
oxytoca isolates resistant to aztreonam (MIC, 32 µg/ml) and
cefuroxime (MIC, 128 µg/ml) was characterized, and the resistance was
found to be caused by an extended-spectrum
-lactamase with a pI of 5.25 and designated OXY-2a. The gene for this
-lactamase
(blaOXY-2a) was located on the chromosome of the
K. oxytoca isolates (40). However, in an effort
to transfer the
-lactam resistance along with plasmid DNA from the
K. oxytoca isolates by electroporation into
ampicillin-susceptible Escherichia coli XAC, transformants resistant to extended-spectrum
-lactams were obtained
(42). The transformants produced a
-lactamase with a pI
of 8.4 and designated CMY-5 and showed increased resistance to
aztreonam, cefuroxime, cefotaxime, and ceftazidime (MIC, >32 µg/ml).
The substrate and inhibition profiles of the CMY-5
-lactamase were highly similar to those of the chromosomal AmpC enzyme in E. coli (42). However, the enzyme activity in the
transformants was much higher than that in the susceptible recipient
(42). The transformants harbored a 7.8-kb plasmid which
differed from the plasmids seen in the donors and could be transferred
into E. coli XAC or C600 recipients by the conventional
transformation technique (42). Nevertheless, the gene for
the CMY-5
-lactamase (blaCMY-5) was poorly
expressed in K. oxytoca, as determined by the
-lactam resistance phenotype and enzymatic properties (42).
Additionally, the extremely low frequency of transformation of pTKH11
by electroporation implied that pTKH11 existed in K. oxytoca
at a low copy number.
In this study, the cryptic plasmid in K. oxytoca and the
AmpC-like
-lactamase carried by this plasmid were further investigated.
 |
MATERIALS AND METHODS |
Bacteria, plasmids, and growth conditions.
The strains and
plasmids used are listed in Table 1.
Bacteria were grown in Luria-Bertani medium (Difco Laboratories,
Detroit, Mich.) or on Luria Bertani agar plates supplemented with
appropriate antibiotics.
Recombinant DNA techniques.
Plasmid DNA was prepared by use
of Mini and Midi columns (Qiagen GmbH, Dusseldorf, Germany) as
recommended by the manufacturer. Transformation of plasmid DNA was
performed as described by Kushner (18). The antibiotics were
used at 4 or 100 µg/ml for ampicillin, 8 µg/ml for aztreonam, and
100 µg/ml for cefotaxime and ceftazidime. Restriction enzymes, calf
intestine alkaline phosphatase, and T4 DNA ligase were purchased from
New England Biolabs, Inc. (Beverly, Mass.), and the conditions for
enzymatic reactions were those suggested by the manufacturer. Analysis
of plasmid DNA fragments was performed by electrophoresis in 0.7 to
1.5% agarose gels with TBE buffer (100 mM Tris base, 89 mM boric acid,
50 mM EDTA [pH 8.0]). As a size standard for the linear restriction
fragments, a 1-kb DNA molecular weight marker (GIBCO BRL, Grand Island,
N.Y.) was used.
Cloning of pTKH11 and the replication region of pNBL63.
For
the purpose of DNA sequencing the entire pTKH11, the plasmid was
digested with BglII and with BglII plus
PstI, and the 0.85-kb PstI, 2.74-kb
PstI-BglII, 2.24-kb BglII, and 5.96-kb
BglII DNA fragments were separately ligated into plasmid
vector pGEM-3Z to form recombinant plasmids pSW-21, pSW-22, pSW-24, and
pSW-28, respectively (Table 1; see also Fig. 3). The 2.45-kb
BglII fragment of plasmid pNBL63, which may include the
replication region for this plasmid, was also ligated into pGEM-3Z to
generate plasmid pSW-26.
DNA sequencing.
The DNA sequence was determined by the
dideoxy chain termination method (31) with an automated DNA
sequencing system (model 377; PE/ABI, Foster City, Calif.). The
template DNAs used for sequencing were plasmids pSW-21, pSW-22, pSW-24,
pSW-26, and pSW-28; the primer walking was started with two
vector-based primers specific for pGEM-3Z. Nucleotide and derived amino
acid sequences were analyzed with the GCG program (Genetics Computer
Group, Inc., Madison, Wis.) and DNA Star software (Lasergene, Madison,
Wis.).
PCR.
To detect the presence of plasmid pTKH11 in the
K. oxytoca isolates, the following primer pair was used:
primer S28R2M (5'-CAA TGT GTG AGA AGC AGT CT-3'; nucleotides [nt]
2186 to 2205 in the pTKH11 sequence) and primer S21R1 (5'-GTA CAT ATC
GCC AAT ACG-3'; complementary to nt 3114 to 3231). This primer pair
generates a 1,045-bp amplicon containing 188 bp upstream of
blaCMY-5 and a 770-bp sequence 5' of
blaCMY-5. A primer pair specific for the region
and including a 298-bp sequence 3' of blaCMY-5
and 231 nt downstream of blaCMY-5 was also used:
primer S21F1 (5'-TTG GCG ATA TGT ACC AGG-3'; nt 3218 to 3235) and
primer S22R1M (5'-TTC ATA CCA GGT TCC CAG-3'; complementary to nt 3730 to 3747). This primer pair produces a 529-bp PCR fragment.
Preparation of total DNA was previously described (39). The
PCR mixture was prepared with a PCR reagent kit according to the
standard method recommended by the manufacturer (Perkin-Elmer Cetus,
Branchburg, N.J.). One to 4 µg of plasmid or total DNA from the
K. oxytoca isolates and 40 pmol of each primer were
included. PCR amplification was performed with a DNA Thermal Cycler 480 (Perkin-Elmer Cetus) at the following temperature profiles: 94°C for
5 min; 30 cycles of 94°C for 30 s, 50°C for 30 s, and
72°C for 1 min; 72°C for 5 min; and 4°C for the remainder of the reaction.
Southern blot analysis.
Transfer of DNA to nylon filters was
performed essentially as described by Southern (33).
Labeling of DNA probes (as shown in Fig.
1) was performed with digoxigenin as
described by the manufacturer (Boehringer Mannheim Biochemicals,
Indianapolis, Ind.). Hybridization was performed at 70°C with buffers
recommended in the instructions included in the digoxigenin kit from
Boehringer.

View larger version (21K):
[in this window]
[in a new window]
|
FIG. 1.
Restriction maps of plasmids pKH11, pNBL63, and pTKH11.
The restriction enzymes used in the construction of the maps are shown
above the bars. The four fragments of pKH11 used as probes are
indicated under the bars. The bars represent the DNA sequences of the
plasmids. DNA fragments showing sequence similarities are indicated by
hatched bars.
|
|
Preparation of
-lactamase extracts and Western blotting.
The preparation of crude
-lactamase extracts was previously
described (41, 42). The protein content of crude enzyme
preparations was determined by use of an AB Kemila-preparat protein
assay (Bio-Rad, Sollentuna, Sweden) with lyophilized bovine serum
albumin as a standard. Electrophoresis was performed with a 12%
polyacrylamide slab gel containing 0.1% sodium dodecyl sulfate
(20). A low-molecular-weight protein standard from Pharmacia
(Uppsala, Sweden) was run in parallel. Immunoblot transfer experiments
were carried out essentially as described by Swanson et al.
(34) with 1:1,000-diluted polyclonal antiserum raised
against E. coli K-12 AmpC
-lactamase (5) as
the primary antibody. Affinity-purified, alkaline
phosphatase-conjugated goat anti-rabbit immunoglobulin G (Organon
Teknika Corp., West Chester, Pa.) was used as the secondary antibody.
Nucleotide sequence accession numbers.
The nucleotide
sequences described in this communication can be found in EMBL-GenBank
under accession no. Y17716 for pTKH11 and Y17846 for the replication
region of pNBL63.
 |
RESULTS |
Analysis of plasmid DNA with restriction endonucleases.
To
reveal the relationships among the plasmids in K. oxytoca
donor strains (KH11 and NBL63) and the E. coli XAC
transformants (42), restriction maps of the K. oxytoca plasmids and the plasmids from the E. coli
transformants were constructed by single and double digestions with a
series of restriction enzymes. As shown in Fig. 1, the restriction
pattern of pKH11 was different from that of the E. coli
transformant plasmid pTKH11 and that of pNBL63. However, the plasmid
from each of the E. coli transformants had the same
restriction map as pTKH11.
DNA hybridization.
Southern blot analysis was performed to
further examine the relationships among the plasmids. The 4.8-kb
plasmid pKH11 was digested with BglII and
HindIII, generating four DNA fragments: 1.75 kb by
BglII-HindIII, 1.35 kb by BglII,
1.1 kb by HindIII, and 0.6 kb by
BglII-HindIII (Fig. 1). Each of the fragments
was labeled as a probe to hybridize with the DNA fragments produced by
restriction digestion with BglII plus HindIII
for pNBL63 and BglII plus PstI for pTKH11. Under
stringent conditions, the 1.75-kb BglII-HindIII fragment of pKH11 hybridized
with the 2.4-kb BglII fragment of pNBL63 and the 2.2-kb
BglII fragment of pTKH11 (Fig. 1). These homologous
fragments may be the areas where the replication origins for the
plasmids are located. The other probes from pKH11 failed to hybridize
with any DNA fragment from either pTKH11 or pNBL63.
Phenotype analysis of plasmids in an E. coli
AmpC
background.
To distinguish enzyme activity
encoded by the plasmid from that encoded by the chromosome, plasmid
pTKH11 was transformed into both E. coli SN01, with a
wild-type ampC gene, and its ampA1 ampC8 mutant
derivative, SN03 (25). Transformants were obtained from both
strains selected on agar plates containing either aztreonam (8 µg/ml)
or ceftazidime (100 µg/ml). Preparations of pKH11 and pNBL63 failed
to transform E. coli SN01 and SN03 to
-lactam resistance.
Analysis of ampC
-lactamase expression.
The
expression of AmpC-like proteins was tested by Western blot analysis
(Fig. 2). AmpC-like proteins were
observed in crude
-lactamase preparations from K. oxytoca
KH11, E. coli SN03/pTKH11, and E. coli SN03/pNU6.
Depending on the dilution factor of the samples, the amount of the
AmpC-like protein in E. coli SN03/pTKH11 was approximately
400-fold larger than that in K. oxytoca KH11 and 10-fold
larger than that in E. coli SN03/pNU6 (10). No
expression of the AmpC-like protein was seen in the E. coli
SN03 recipient strain.

View larger version (55K):
[in this window]
[in a new window]
|
FIG. 2.
Western blot of crude -lactamase from an E. coli recipient, a K. oxytoca donor, and their
transformants with AmpC -lactamase-specific antisera. The AmpC
-lactamase-specific band is indicated by an arrow. Lane A, 50 µg
of crude -lactamase from K. oxytoca KH11; lane B, 50 µg
of crude -lactamase from E. coli SN03; lane C, 5 µg of
crude -lactamase from E. coli SN03/pNU6; lane D,
molecular weight standards; lane E, 5 µg of crude -lactamase from
E. coli SN03/pTKH11; lane F, 0.5 µg of crude -lactamase
from E. coli SN03/pTKH11; lane G, 0.25 µg of crude
-lactamase from E. coli SN03/pTKH11; lane H, 0.125 µg
of crude -lactamase from E. coli SN03/pTKH11.
|
|
DNA sequence of pTKH11.
The size of plasmid pTKH11 was
determined to be 8,193 bp, and a BanI restriction site was
designated as the first nucleotide to linearize the circle sequence in
order to facilitate description. The whole DNA sequence was analyzed
for open reading frames (ORFs), and the amino acid sequences deduced
from the ORFs were compared with the sequences of known polypeptides in
both the Tblastn and the Blastp data banks. The regions containing no
significant ORFs (more than 50 amino acid residues) were sent to the
data banks for DNA sequence comparison. As shown in Fig.
3, the plasmid contained seven ORFs, five
of which were transcribed in the same direction as the DNA sequence of
pTKH11 and the other two of which were located on the opposite DNA
strand. Each of the ORFs was preceded by putative Shine-Dalgarno and
promoter consensus sequences, except for ORF1.

View larger version (12K):
[in this window]
[in a new window]
|
FIG. 3.
Genetic organization of the genes identified on plasmid
pTKH11. The direction of gene transcription is shown by the arrows. The
DNA inserts in various recombinant plasmids are represented by lines of
different lengths, and the significant restriction sites are indicated.
The inverted repeat (IR) in the putative insertion element (IS) is
shown, and mismatched nucleotides are indicated by bold letters.
|
|
The 188-amino-acid product of ORF1 showed no similarities with any
protein in the data banks. Located 97 bp downstream of
ORF1, ORF2,
which encoded a polypeptide of 420 amino acid residues,
showed 12%
identity and 38% similarity to the transposase of IS
1247 (accession no.
X84038) from
Xanthobacter autotrophicus
(
37).
An inverted repeat of 16 bp was identified at 151 nt
upstream
(nt 628 to 644) and 163 nt downstream (complementary to nt
2220
to 2235) of ORF2 (Fig.
3). The inverted repeat was imperfect,
with
three nucleotide mismatches. No direct repeat which might
serve as the
target site for an insertion element could be found
at the junction
regions of the inverted
repeat.
The 381-amino-acid product of ORF3, which followed ORF2 at an interval
of 317 nt, showed 99.7 and 97% identities to the CMY-2

-lactamase
(
1) and AmpC of
Citrobacter freundii
(
13), respectively.
Thus, ORF3 was identified as
blaCMY-5. The only difference noted
in the two
plasmidic enzymes was the substitution of Leu-105 in
CMY-2 with Phe-105
in CMY-5 (Fig.
4). Analysis of the
blaCMY-5 flanking region, including 466 upstream
and 124 downstream nt,
revealed that the DNA sequence of the
blaCMY-5 region was similar
to that of CMY-2 by
over 99%, and the same consensus sequences
were shared by both

-lactamases.

View larger version (57K):
[in this window]
[in a new window]
|
FIG. 4.
Multiple amino acid sequence alignments of the CMY-5
-lactamase with K. pneumoniae CMY-2 and C. freundii AmpC (BLACF) -lactamases. The amino acid stretches in
bold letters are the active site (SVSK), the conserved triad (KTG), and
the class C-typical motif (YXN). Amino acid substitutions are indicated
with asterisks, and Phe-105 in CMY-5 and Leu-105 in CMY-2 are shown in
bold letters.
|
|
ORF4 was located 94 bp downstream of
blaCMY-5
and its 177-amino-acid peptide product exhibited 98% identity with the
outer
membrane lipoprotein encoded by gene
Blc from
C. freundii (
7).
ORF5, which encoded a product of 105 amino acids, was located
on the complementary strand of the pTKH11
sequence, and the stop
codon of this ORF overlapped that of ORF4 by 2 nt. The deduced
amino acid sequence of the product of ORF5 was
identical to that
of the SugE protein of
C. freundii
(unpublished data; accession
no.
U21727). ORF6, which encodes a
putative protein with unknown
function, was transcribed in the same
direction and was located
between ORF5 and ORF7. At 56 bp downstream of
ORF6, ORF7 was located
in the same orientation as ORF5 and encoded a
putative protein
with 70% identity and 77% similarity to the
relaxation protein
(accession no.
X01654) of
Salmonella
typhimurium (
6).
Within the 1.8-kb DNA sequence at the 3' region (nt 6254 to 8199) of
pTKH11, no significant ORFs could be identified. By DNA
sequence
comparison, it was shown that the 1- to 1.5-kb region
5' of ORF7,
coordinating nt 6371 to 7370 or nt 7870 (Fig.
3),
was significantly
homologous to replication regions of various
plasmids (
9,
23,
24,
28). The highest similarity was
shown by the replicon of pJHCMW1,
which was first identified in
a pathogenic multiresistant
K. pneumoniae strain isolated from
the cerebrospinal fluid of a
neonate with meningitis (
38). These
sequence similarities
indicated that the 733-bp sequence from
nt 6371 to nt 7105 might be the
replicon of pTKH11. The RNA transcripts
RNA I and RNA II, which serve
as functional elements for plasmid
replication (
27), were
identified (Fig.
3). RNA I and RNA II
of pTKH11 were 70% and 81%
similar, respectively, to the corresponding
transcripts from pJHCMW1
(
9).
DNA sequence of the replication region of plasmid pNBL63.
The
1,423-bp 3' part of the 2,444-bp BglII fragment of pNBL63
was highly similar to the replication regions of several RNA priming
plasmids (8, 9, 24). By DNA comparison with these well-characterized plasmids, the replication region of pNBL63 was
identified (Fig. 5). The region can be
divided into three functionally different parts. The first part, from
nt 1037 to nt 1731, was the DNA sequence containing genes for RNA I and
RNA II, which showed 84% similarity with the corresponding region in
pJHCMW1. The 103-bp RNA I and the 521-bp RNA II transcripts of pNBL63
exhibited 71 and 87% similarities to those of pJHCMW1, respectively.
The promoters for RNA I and RNA II were completely conserved in the two
plasmids. A consensus sequence for the replication origin
(oriV) of ColE1 (36) was also found at an
appropriate location (nt 1599 to 1601). In the second part, the DNA
sequence encoding a peptide of 63 amino acids was observed 178 bp
downstream of oriV and showed 65% identity and 76%
similarity to the genetic product of Rom (17). In
the third part, the DNA sequence encoding a putative protein of 133 amino acid residues was identified downstream of that encoding the Rom
homolog and was 29% identical and 44% similar in the amino terminus
to entry exclusion protein 1 (Exc1) produced by the ColE1 plasmid
(8).

View larger version (62K):
[in this window]
[in a new window]
|
FIG. 5.
Nucleotide sequence of the 1,424-bp replication region
of pNBL63. The sequence includes the 1,424-bp 3' part of the 2,444-bp
BglII fragment of pNBL63. The consensus sequences are
underlined and labeled. The putative transcription start sites are
indicated by bold letters. The putative start codons are underlined,
the stop codons are designated with asterisks, and the gene
designations are given below the deduced amino acids, which are
specified by standard one-letter abbreviations.
|
|
Similarity between the replication regions of pNBL63 and
pTKH11.
The regions containing genes for RNA I and RNA II, which
were 745 bp for pNBL63 (nt 1035 to 1780) and 784 bp for pTKH11 (nt 6370 to 7154), were 83% similar between the two plasmids. The RNA I
transcript of pNBL63 was highly similar to that of pTKH11, with an
identity of 97% (Fig. 6a). The RNA II
transcripts of the two plasmids were estimated to be 521 nt for pNBL63
and 560 nt for pTKH11, with an identity of 90% (Fig. 6b).
Nevertheless, no Rom- and Exc1-like genes were
identified in the region downstream of the RNA I-RNA II region of
pTKH11.

View larger version (51K):
[in this window]
[in a new window]
|
FIG. 6.
Bestfit comparison of the pNBL63 and pTKH11 RNA Is and
RNA IIs. Identical nucleotides are indicated by vertical bars, and gaps
are shown by periods.
|
|
Detection of plasmid pTKH11 in DNA preparations from K. oxytoca isolates by PCR amplification.
To confirm the
presence of pTKH11 in the K. oxytoca isolates, a plasmid
preparation from strain NBL63 and total DNA samples from strains KH11,
KH55, KH78, and KH93 were used as templates for the detection of
pTKH11. PCR products of 1.05 and 0.5 kb were obtained with primer pairs
S28R2M-S21R1 and S21F1-S22R1M, respectively. Nevertheless, template
DNAs had to be used in relatively large amounts (2 to 4 µg/100-µl
reaction). The PCR products were confirmed to be the DNA fragments of
the blaCMY-5 region in pTKH11 by DNA sequencing.
 |
DISCUSSION |
In a previous study, a plasmid having a low copy number and a
cryptic phenotype with respect to
-lactam resistance in clinical isolates of K. oxytoca was found to express an AmpC-like
-lactamase in E. coli XAC electrotransformants
(42). In this investigation, the plasmid, designated pTKH11,
was identified as being harbored by each of the electrotransformants
and as existing in most of the K. oxytoca donors. Each of
the K. oxytoca isolates also contained an additional
plasmid, such as pNBL63, which could be readily extracted by a routine
procedure. pTKH11 was obtained only through electroporation of the
plasmid into E. coli (42), and the detection of
pTKH11 in K. oxytoca by PCR required a large amount of
template DNA. These results suggested that pNBL63 was predominantly
replicated, while pTKH11 obviously existed in very few copies in the
K. oxytoca isolates. A similar finding was recently reported
by other investigators (21).
Plasmid pTKH11 was introduced into the ampC
-lactamase
null mutant SN03 (25), and the resultant transformant showed
resistance to aztreonam and ceftazidime and hyperproduction of an
AmpC-like protein, designated CMY-5 (Fig. 2). The level of production
of the CMY-5
-lactamase was low in K. oxytoca KH11. These
data strongly support the notions that CMY-5 was encoded by pTKH11 and
that the plasmid indeed existed in the K. oxytoca isolates.
Moreover, the low level of expression of CMY-5 was consistent with the
extremely low copy number of plasmid pTKH11 in K. oxytoca.
A comparison of amino acid sequences showed that CMY-5 differed from
CMY-2 by only one residue and showed 97% identity with C. freundii AmpC (Fig. 4). The high degree of amino acid identity conferred the same catalytic activities on the enzymes (1, 42) and implied a close relationship among the three
-lactamases examined here.
The
-lactamases CMY-2, LAT-1, and BIL-1 are members of the plasmidic
cephamycinases (CMYs) of amber class C
-lactamases (1,
11) and are believed to have a very close evolutionary relationship with C. freundii AmpC because of their high
homologies (>94%) (1). Furthermore, a plasmid carrying a
CMY-2
-lactamase gene was characterized in C. freundii,
and the plasmid was transferable to K. pneumoniae and
E. coli (3). In this investigation, it was shown
that blaCMY-5 was followed by Blc and
SugE (Fig. 3); blaCMY-5 was 98%
similar to C. freundii Blc and 100% identical to C. freundii SugE. Assembly of the DNA sequences for the
ampC region of C. freundii GC3 (13)
and the Blc and SugE regions of C. freundii (accession no. U21727) revealed that the genetic organization of these genes was identical to that found in pTKH11. The
high degree of similarity in both the gene products and the genetic
organization provided evidence that the chromosomally encoded AmpC of
C. freundii is the origin of the plasmid-mediated CMYs.
Thus, C. freundii AmpC should be regarded as the
evolutionary precursor of CMYs rather than a homologous enzyme in the
same classification group.
The Blc product may provide a starvation response function
(7). The product of SugE is involved in nitrogen
fixation in bacterial cells (12). Therefore, neither
Blc nor SugE is related to the expression of the
ampC gene. The insertion sequence-like element observed
upstream of blaCMY-5 might be responsible for the translocation of the
-lactamase. ORF7 of pTKH11 specified a
protein similar to an S. typhimurium relaxation protein
which is involved in the formation of the relaxation complex during the
mobilization of plasmid pSC101 (6). Accordingly, the product of ORF7 may also play a role in the spread of pTKH11.
blaCMY-5 was preceded by an intact promoter
sequence; hence, the CMY-5
-lactamase could be highly expressed in
E. coli XAC and E. coli SN03. Thus, it was
surprising that the blaCMY-5 gene product failed
to confer resistance in the K. oxytoca isolates. Analysis of
the replication regions for pNBL63 and pTKH11 showed that they both
belonged to the RNA priming category of plasmids (29, 30,
32). In these plasmids, the replication process is regulated by
the frequency of RNA I priming (14). The sequence homology
between RNA Is also determines plasmid incompatibility through the
cross suppression of replication by RNA I (19, 35). The
extremely low copy number of pTKH11 in K. oxytoca might be due to incompatibility between pNBL63 and pTKH11, since a high degree
of sequence similarity in the RNA I transcripts (97%) was noted.
pNBL63 may have originated from K. oxytoca based on the fact
that its RNA II transcript showed a high degree of similarity to that
of pJHCMW1 of K. pneumoniae; pTKH11, on the other hand, may
have been transferred from C. freundii into K. oxytoca. Thus, pTKH11 could not be stably maintained in the
K. oxytoca host.
In conclusion, K. oxytoca plasmid pTKH11 was characterized
as harboring a
-lactamase from the CMY family. CMY-5 was cryptic in
the K. oxytoca clinical isolates but was highly expressed in E. coli. The cryptic phenotype was probably caused by the
presence of an incompatible plasmid in the K. oxytoca host
cell. The CMY
-lactamases were demonstrated to have originated from
the chromosomal ampC gene of C. freundii based on
the identical genetic organizations seen in the
blaCMY-5 and C. freundii ampC gene
regions. These results present direct evidence for the translocation of
a
-lactamase-associated gene region from the chromosome to a plasmid.
 |
ACKNOWLEDGMENTS |
M. Norgren was supported by the Medical Research Council (grant
08675) and the medical faculty at Umeå University. S. W. Wu was
partially supported by the Kempe Foundation.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Box 152, The
Rockefeller University, 1230 York Ave., New York, NY 10021. Phone:
(212) 327-8278. Fax: (212) 327-8688. E-mail:
wus{at}rockvax.rockefeller.edu.
 |
REFERENCES |
| 1.
|
Bauernfeind, A.,
I. Stemplinger,
R. Jungwirth, and H. Giamarellou.
1996.
Characterization of the plasmidic beta-lactamase CMY-2, which is responsible for cephamycin resistance.
Antimicrob. Agents Chemother.
40:221-224[Abstract].
|
| 2.
|
Bauernfeind, A., and G. Horl.
1987.
Novel R-factor born beta-lactamase of Escherichia coli conferring resistance to cephalosporins.
Infection
15:257-259[Medline].
|
| 3.
|
Bauernfeind, A.,
O. Ang,
C. Bal, and R. Jungwirth.
1994.
Plasmidic cephamycinase gene in Citrobacter freundii transferable to Klebsiella pneumoniae and Escherichia coli.
In
Presented at the Scientific Meeting of the European Society of Chemotherapy, abstr. OC2. Coimbra, Portugal..
|
| 4.
|
Bauernfeind, A.,
S. Schweighart,
K. Dornbusch, and H. Giamarellou.
1990.
A transferable cephamycinase (CMY-ase) in Klebsiella pneumoniae (K. pn.), abstr. 190, p. 118.
In
Program and abstracts of the 30th Interscience Conference on Antimicrobial Agents and Chemotherapy. American Society for Microbiology, Washington, D.C.
|
| 5.
|
Bergstrom, S., and S. Normark.
1979.
Beta-lactam resistance in clinical isolates of Escherichia coli caused by elevated production of the ampC-mediated chromosomal beta-lactamase.
Antimicrob. Agents Chemother.
16:427-433[Abstract/Free Full Text].
|
| 6.
|
Bernardi, A., and F. Bernardi.
1984.
Complete sequence of pSC101.
Nucleic Acids Res.
12:9415-9426[Abstract/Free Full Text].
|
| 7.
|
Bishop, R. E.,
S. S. Penfold,
L. S. Frost,
J. V. Holtje, and J. H. Weiner.
1995.
Stationary phase expression of a novel Escherichia coli outer membrane lipoprotein and its relationship with mammalian apolipoprotein D. Implications for the origin of lipocalins.
J. Biol. Chem.
270:23097-23103[Abstract/Free Full Text].
|
| 8.
|
Chan, P. T.,
H. Ohmori,
J. Tomizawa, and J. Lebowitz.
1985.
Nucleotide sequence and gene organization of ColE1 DNA.
J. Biol. Chem.
260:8925-8935[Abstract/Free Full Text].
|
| 9.
|
Dery, K. J.,
R. Chavideh,
V. Waters,
R. Chamorro,
L. S. Tolmasky, and M. E. Tolmasky.
1997.
Characterization of the replication and mobilization regions of the multiresistance Klebsiella pneumoniae plasmid pJHCMW1.
Plasmid
38:97-105[Medline].
|
| 10.
|
Edlund, T.,
T. Grundstrom, and S. Normark.
1979.
Isolation and characterization of DNA repetitions carrying the chromosomal beta-lactamase of Escherichia coli K-12.
Mol. Gen. Genet.
173:115-125[Medline].
|
| 11.
|
Fosberry, A. P.,
D. J. Payne,
E. J. Lawlor, and J. E. Hodgson.
1994.
Cloning and sequencing analysis of blaBIL-1, a plasmid-mediated class C -lactamase gene in Escherichia coli BS.
Antimicrob. Agents Chemother.
38:1182-1185[Abstract/Free Full Text].
|
| 12.
|
Greener, T.,
D. Govezensky, and A. Zamir.
1993.
A novel multicopy suppressor of a groEL mutation includes two nested open reading frames transcribed from different promoters.
EMBO J.
12:889-896[Medline].
|
| 13.
| Haruta, S., K. Taniguchi, M. Nukaga, and T. Sawai.
1996. Unpublished data.
|
| 14.
|
Itoh, T., and J. Tomizawa.
1980.
Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H.
Proc. Natl. Acad. Sci. USA
77:2450-2454[Abstract/Free Full Text].
|
| 15.
|
Jacoby, G. A.
1994.
Extrachromosomal resistance in Gram-negative organisms: the evolution of -lactamase.
Trends Microbiol.
2:357-360[Medline].
|
| 16.
|
Jacoby, G. A., and A. A. Medeiros.
1991.
More extended-spectrum beta-lactamases.
Antimicrob. Agents Chemother.
35:1697-1704[Free Full Text].
|
| 17.
|
Keenleyside, W. J., and C. Whitfield.
1995.
Lateral transfer of rfb genes: a mobilizable ColE1-type plasmid carries the rfbO:54 (O:54 antigen biosynthesis) gene cluster from Salmonella enterica serovar Borreze.
J. Bacteriol.
177:5247-5253[Abstract/Free Full Text].
|
| 18.
|
Kushner, S. R.
1987.
An improved method for transformation of Escherichia coli with ColE1-derived plasmids, p. 17.
In
H. B. Boyer, and S. Nicosia (ed.), Genetic engineering. Elsevier/North-Holland Publishing Co., Amsterdam, The Netherlands.
|
| 19.
|
Lacatena, R. M., and G. Cesareni.
1981.
Base pairing of RNAI with its complementary sequence in the primer precursor inhibits ColE1 replication.
Nature
294:623-626[Medline].
|
| 20.
|
Laemmli, U. K.
1970.
Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
Nature
227:680-685[Medline].
|
| 21.
|
Liu, Y.,
B. L. Mee, and L. Mulgrave.
1997.
Identification of clinical isolates of indole-positive Klebsiella spp., including Klebsiella planticola, and a genetic and molecular analysis of their beta-lactamases.
J. Clin. Microbiol.
35:2365-2369[Abstract].
|
| 22.
|
Matthew, M., and A. M. Harris.
1976.
Identification of beta-lactamases by analytical isoelectric focusing: correlation with bacterial taxonomy.
J. Gen. Microbiol.
94:55-67[Abstract/Free Full Text].
|
| 23.
|
Mikiewicz, D.,
B. Wrobel,
G. Wegrzyn, and A. Plucienniczak.
1997.
Isolation and characterization of a ColE1-like plasmid from Enterobacter agglomerans with a novel variant of rom gene.
Plasmid
38:210-219[Medline].
|
| 24.
|
Nomura, N., and Y. Murooka.
1994.
Characterization and sequencing of the region required for replication of a non-selftransmissible plasmid pEC3 isolated from Erwinia carotovora subsp. carotovora.
J. Ferment. Bioeng.
78:250-254.
|
| 25.
|
Normark, S., and L. G. Burman.
1977.
Resistance of Escherichia coli to penicillins: fine mapping and dominance of chromosomal -lactamase mutations.
J. Bacteriol.
132:1-7[Abstract/Free Full Text].
|
| 26.
|
Papanicolaou, G. A.,
A. A. Medeiros, and G. A. Jacoby.
1990.
Novel plasmid-mediated -lactamase (MIR-1) conferring resistance to oxyimino- and -methoxy -lactams in clinical isolates of Klebsiella pneumoniae.
Antimicrob. Agents Chemother.
34:2200-2209[Abstract/Free Full Text].
|
| 27.
|
Polisky, B.
1988.
ColE1 replication control circuitry: sense from antisense.
Cell
55:929-932[Medline].
|
| 28.
|
Rose, R. E.
1988.
The nucleotide sequence of pACYC177.
Nucleic Acids Res.
16:356[Free Full Text].
|
| 29.
|
Sakakibara, Y., and J. I. Tomizawa.
1974.
Replication of colicin E1 plasmid DNA in cell extracts.
Proc. Natl. Acad. Sci. USA
71:802-806[Abstract/Free Full Text].
|
| 30.
|
Sakakibara, Y., and J. I. Tomizawa.
1974.
Replication of colicin E1 plasmid DNA in cell extracts. II. Selective synthesis of early replicative intermediates.
Proc. Natl. Acad. Sci. USA
71:1403-1407[Abstract/Free Full Text].
|
| 31.
|
Sanger, F.,
S. Nicklen, and A. R. Coulson.
1977.
DNA sequencing with chain-terminating inhibitors.
Proc. Natl. Acad. Sci. USA
74:5463-5467[Abstract/Free Full Text].
|
| 32.
|
Selzer, G.,
T. Som,
T. Itoh, and J. Tomizawa.
1983.
The origin of replication of plasmid p15A and comparative studies on the nucleotide sequences around the origin of related plasmids.
Cell
32:119-129[Medline].
|
| 33.
|
Southern, E. M.
1975.
Detection of specific sequences among DNA fragments separated by gel electrophoresis.
J. Mol. Biol.
98:503-517[Medline].
|
| 34.
|
Swanson, J.,
L. W. Mayer, and M. R. Tam.
1982.
Antigenicity of Neisseria gonorrhoeae outer membrane protein(s) III detected by immunoprecipitation and Western blot transfer with a monoclonal antibody.
Infect. Immun.
38:668-672[Abstract/Free Full Text].
|
| 35.
|
Tomizawa, J., and T. Itoh.
1981.
Plasmid ColE1 incompatibility determined by interaction of RNAI with primer transcripts.
Proc. Natl. Acad. Sci. USA
78:6096-6100[Abstract/Free Full Text].
|
| 36.
|
Tomizawa, J.-I.,
H. Ohmori, and R. E. Bird.
1977.
Origin of replication of colicin E1 plasmid DNA.
Proc. Natl. Acad. Sci. USA
74:1865-1869[Abstract/Free Full Text].
|
| 37.
|
Van Der Ploeg, J.,
M. Willemsen,
G. Van Hall, and D. B. Janssen.
1995.
Adaption of Xanthobacter autotrophicus GJ10 to bromoacetate due to activation and mobilization of the haloacetate dehalogenase gene by insertion element IS1247.
J. Bacteriol.
177:1348-1356[Abstract/Free Full Text].
|
| 38.
|
Woloj, M.,
M. E. Tolmasky,
M. Roberts, and J. H. Crosa.
1986.
Plasmid-encoded amikacin resistance in multiresistant strains of Klebsiella pneumoniae isolated from neonates with meningitis.
Antimicrob. Agents Chemother.
29:315-319[Abstract/Free Full Text].
|
| 39.
|
Wu, S.,
H. de Lencastre, and A. Tomasz.
1998.
Genetic organization of the mecA region in methicillin-susceptible and methicillin-resistant strains of Staphylococcus sciuri.
J. Bacteriol.
180:236-242[Abstract/Free Full Text].
|
| 40.
| Wu, S. W., K. Dornbusch, and G. Kronvall.
Genetic characterization of resistance to extended-spectrum
beta-lactams in Klebsiella oxytoca septicemia isolates
recovered from hospitals in the Stockholm area. Antimicrob. Agents
Chemother., in press.
|
| 41.
|
Wu, S. W.,
K. Dornbusch,
E. Goransson,
U. Ransjo, and G. Kronvall.
1991.
Characterization of Klebsiella oxytoca septicaemia isolates resistant to aztreonam and cefuroxime.
J. Antimicrob. Chemother.
28:389-397[Abstract/Free Full Text].
|
| 42.
|
Wu, S. W.,
K. Dornbusch,
M. Norgren, and G. Kronvall.
1992.
Extended spectrum beta-lactamase from Klebsiella oxytoca, not belonging to the TEM or SHV family.
J. Antimicrob. Chemother.
30:3-16[Abstract/Free Full Text].
|
Antimicrobial Agents and Chemotherapy, June 1999, p. 1350-1357, Vol. 43, No. 6
0066-4804/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Daniels, J. B., Call, D. R., Hancock, D., Sischo, W. M., Baker, K., Besser, T. E.
(2009). Role of Ceftiofur in Selection and Dissemination of blaCMY-2-Mediated Cephalosporin Resistance in Salmonella enterica and Commensal Escherichia coli Isolates from Cattle. Appl. Environ. Microbiol.
75: 3648-3655
[Abstract]
[Full Text]
-
Zioga, A., Whichard, J. M., Kotsakis, S. D., Tzouvelekis, L. S., Tzelepi, E., Miriagou, V.
(2009). CMY-31 and CMY-36 Cephalosporinases Encoded by ColE1-Like Plasmids. Antimicrob. Agents Chemother.
53: 1256-1259
[Abstract]
[Full Text]
-
Jacoby, G. A.
(2009). AmpC {beta}-Lactamases. Clin. Microbiol. Rev.
22: 161-182
[Abstract]
[Full Text]
-
Haldorsen, B., Aasnaes, B., Dahl, K. H., Hanssen, A.-M., Simonsen, G. S., Walsh, T. R., Sundsfjord, A., Lundblad, E. W.
(2008). The AmpC phenotype in Norwegian clinical isolates of Escherichia coli is associated with an acquired ISEcp1-like ampC element or hyperproduction of the endogenous AmpC. J Antimicrob Chemother
62: 694-702
[Abstract]
[Full Text]
-
Daniels, J. B., Call, D. R., Besser, T. E.
(2007). Molecular Epidemiology of blaCMY-2 Plasmids Carried by Salmonella enterica and Escherichia coli Isolates from Cattle in the Pacific Northwest. Appl. Environ. Microbiol.
73: 8005-8011
[Abstract]
[Full Text]
-
Cascales, E., Buchanan, S. K., Duche, D., Kleanthous, C., Lloubes, R., Postle, K., Riley, M., Slatin, S., Cavard, D.
(2007). Colicin Biology. Microbiol. Mol. Biol. Rev.
71: 158-229
[Abstract]
[Full Text]
-
Wachino, J.-i., Yamane, K., Kimura, K., Shibata, N., Suzuki, S., Ike, Y., Arakawa, Y.
(2006). Mode of Transposition and Expression of 16S rRNA Methyltransferase Gene rmtC Accompanied by ISEcp1.. Antimicrob. Agents Chemother.
50: 3212-3215
[Abstract]
[Full Text]
-
Su, L.-H., Chen, H.-L., Chia, J.-H., Liu, S.-Y., Chu, C., Wu, T.-L., Chiu, C.-H.
(2006). Distribution of a transposon-like element carrying blaCMY-2 among Salmonella and other Enterobacteriaceae. J Antimicrob Chemother
57: 424-429
[Abstract]
[Full Text]
-
D'Andrea, M. M., Nucleo, E., Luzzaro, F., Giani, T., Migliavacca, R., Vailati, F., Kroumova, V., Pagani, L., Rossolini, G. M.
(2006). CMY-16, a Novel Acquired AmpC-Type {beta}-Lactamase of the CMY/LAT Lineage in Multifocal Monophyletic Isolates of Proteus mirabilis from Northern Italy. Antimicrob. Agents Chemother.
50: 618-624
[Abstract]
[Full Text]
-
Poirel, L., Lartigue, M.-F., Decousser, J.-W., Nordmann, P.
(2005). ISEcp1B-Mediated Transposition of blaCTX-M in Escherichia coli. Antimicrob. Agents Chemother.
49: 447-450
[Abstract]
[Full Text]
-
Nasim, K., Elsayed, S., Pitout, J. D. D., Conly, J., Church, D. L., Gregson, D. B.
(2004). New Method for Laboratory Detection of AmpC {beta}-Lactamases in Escherichia coli and Klebsiella pneumoniae. J. Clin. Microbiol.
42: 4799-4802
[Abstract]
[Full Text]
-
Giles, W. P., Benson, A. K., Olson, M. E., Hutkins, R. W., Whichard, J. M., Winokur, P. L., Fey, P. D.
(2004). DNA Sequence Analysis of Regions Surrounding blaCMY-2 from Multiple Salmonella Plasmid Backbones. Antimicrob. Agents Chemother.
48: 2845-2852
[Abstract]
[Full Text]
-
Bonnet, R.
(2004). Growing Group of Extended-Spectrum {beta}-Lactamases: the CTX-M Enzymes. Antimicrob. Agents Chemother.
48: 1-14
[Full Text]
-
Poirel, L., Decousser, J.-W., Nordmann, P.
(2003). Insertion Sequence ISEcp1B Is Involved in Expression and Mobilization of a blaCTX-M {beta}-Lactamase Gene. Antimicrob. Agents Chemother.
47: 2938-2945
[Abstract]
[Full Text]
-
Bou, G., Cartelle, M., Tomas, M., Canle, D., Molina, F., Moure, R., Eiros, J. M., Guerrero, A.
(2002). Identification and Broad Dissemination of the CTX-M-14 {beta}-Lactamase in Different Escherichia coli Strains in the Northwest Area of Spain. J. Clin. Microbiol.
40: 4030-4036
[Abstract]
[Full Text]
-
Decre, D., Verdet, C., Raskine, L., Blanchard, H., Burghoffer, B., Philippon, A., Sanson-Le-Pors, M. J., Petit, J. C., Arlet, G.
(2002). Characterization of CMY-type {beta}-lactamases in clinical strains of Proteus mirabilis and Klebsiella pneumoniae isolated in four hospitals in the Paris area. J Antimicrob Chemother
50: 681-688
[Abstract]
[Full Text]
-
Sanchez, S., McCrackin Stevenson, M. A., Hudson, C. R., Maier, M., Buffington, T., Dam, Q., Maurer, J. J.
(2002). Characterization of Multidrug-Resistant Escherichia coli Isolates Associated with Nosocomial Infections in Dogs. J. Clin. Microbiol.
40: 3586-3595
[Abstract]
[Full Text]
-
Doi, Y., Shibata, N., Shibayama, K., Kamachi, K., Kurokawa, H., Yokoyama, K., Yagi, T., Arakawa, Y.
(2002). Characterization of a Novel Plasmid-Mediated Cephalosporinase (CMY-9) and Its Genetic Environment in an Escherichia coli Clinical Isolate. Antimicrob. Agents Chemother.
46: 2427-2434
[Abstract]
[Full Text]
-
Vakulenko, S. B., Golemi, D., Geryk, B., Suvorov, M., Knox, J. R., Mobashery, S., Lerner, S. A.
(2002). Mutational Replacement of Leu-293 in the Class C Enterobacter cloacae P99 {beta}-Lactamase Confers Increased MIC of Cefepime. Antimicrob. Agents Chemother.
46: 1966-1970
[Abstract]
[Full Text]
-
Cao, V., Lambert, T., Courvalin, P.
(2002). ColE1-Like Plasmid pIP843 of Klebsiella pneumoniae Encoding Extended-Spectrum {beta}-Lactamase CTX-M-17. Antimicrob. Agents Chemother.
46: 1212-1217
[Abstract]
[Full Text]
-
Chanawong, A., M'Zali, F. H., Heritage, J., Xiong, J.-H., Hawkey, P. M.
(2002). Three Cefotaximases, CTX-M-9, CTX-M-13, and CTX-M-14, among Enterobacteriaceae in the People's Republic of China. Antimicrob. Agents Chemother.
46: 630-637
[Abstract]
[Full Text]
-
Dutour, C., Bonnet, R., Marchandin, H., Boyer, M., Chanal, C., Sirot, D., Sirot, J.
(2002). CTX-M-1, CTX-M-3, and CTX-M-14 {beta}-Lactamases from Enterobacteriaceae Isolated in France. Antimicrob. Agents Chemother.
46: 534-537
[Abstract]
[Full Text]
-
Philippon, A., Arlet, G., Jacoby, G. A.
(2002). Plasmid-Determined AmpC-Type {beta}-Lactamases. Antimicrob. Agents Chemother.
46: 1-11
[Full Text]
-
Zhao, S., White, D. G., McDermott, P. F., Friedman, S., English, L., Ayers, S., Meng, J., Maurer, J. J, Holland, R., Walker, R. D.
(2001). Identification and Expression of Cephamycinase blaCMY Genes in Escherichia coli and Salmonella Isolates from Food Animals and Ground Meat. Antimicrob. Agents Chemother.
45: 3647-3650
[Abstract]
[Full Text]
-
Winokur, P. L., Vonstein, D. L., Hoffman, L. J., Uhlenhopp, E. K., Doern, G. V.
(2001). Evidence for Transfer of CMY-2 AmpC {beta}-Lactamase Plasmids between Escherichia coli and Salmonella Isolates from Food Animals and Humans. Antimicrob. Agents Chemother.
45: 2716-2722
[Abstract]
[Full Text]
-
Winokur, P. L., Brueggemann, A., DeSalvo, D. L., Hoffmann, L., Apley, M. D., Uhlenhopp, E. K., Pfaller, M. A., Doern, G. V.
(2000). Animal and Human Multidrug-Resistant, Cephalosporin-Resistant Salmonella Isolates Expressing a Plasmid-Mediated CMY-2 AmpC beta -Lactamase. Antimicrob. Agents Chemother.
44: 2777-2783
[Abstract]
[Full Text]