Previous Article | Next Article ![]()
Antimicrobial Agents and Chemotherapy, July 1999, p. 1644-1650, Vol. 43, No. 7
Service de Bactériologie-Virologie,
Received 20 July 1998/Returned for modification 9 November
1998/Accepted 23 April 1999
From genomic DNA of the clinical isolate Nocardia
farcinica VIC, a 1.6-kb Sau3AI fragment was cloned
and expressed in Escherichia coli JM109. The recombinant
strain expressed a Nocardia spp. are soil organisms that are opportunistic
pathogens for humans and animals (4). The strains belonging
to this genus, which includes at least 12 different species, are responsible for a wide spectrum of clinical diseases, especially in
immunocompromised patients. The number of such isolates has increased
twofold in France over the last 10 years (7). The isolates
belonging to N. farcinica species represent about 25% of
all Nocardia strains isolated in France (8).
Moreover, the frequent presence of this species as a cause of
disseminated human disease, its high virulence compared to the other
Nocardia species, and its high degree of drug resistance
warrant attempts to separate N. farcinica from the N. asteroides complex in clinical laboratories and to study their
resistance profiles.
Sulfonamides have been the mainstay for nocardiosis treatment (38,
49, 60). Broad-spectrum cephalosporins, such as cefotaxime and
imipenem combined with amikacin, are used to take potential advantage
of these rapidly bactericidal agents (20, 38, 54). These
antibiotics seemed to improve antibacterial treatment efficacy, although a Partial biochemical characterizations of In the present study, we have examined the Bacterial strains and plasmids.
The bacterial strains used
in this work are listed in Table 1. The
N. farcinica strains were identified by conventional methods and by molecular techniques as described previously (34, 52) at the National Reference Center for Mycosis, Antifungal Therapy and
Actinomycetes (Institut Pasteur, Paris, France).
Antimicrobial agents and MIC determinations.
The
antimicrobial agents used in this study were obtained from standard
laboratory powders and were used immediately after their
solubilization. The agents and their sources were as follows: amoxicillin, clavulanic acid, and ticarcillin (Smith Kline Beecham, Nanterre, France); aztreonam and cefepime (Bristol-Myers Squibb, Paris-La Défense, France); ceftazidime (GlaxoWellcome, Paris, France); cephalothin (Eli Lilly, Saint-Cloud, France); piperacillin and
tazobactam (Lederle, Oullins, France); sulbactam (Pfizer, Orsay,
France); benzylpenicillin and cefotaxime (Hoechst-Roussel, Paris,
France); cefoxitin and imipenem (Merck Sharp & Dohme-Chibret, Paris,
France); and meropenem (Zeneca, Paris, France).
0066-4804/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Biochemical-Genetic Analysis and Distribution of
FAR-1, a Class A
-Lactamase from Nocardia
farcinica
![]()
ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-lactamase (pI, 4.6), FAR-1, which conferred high
levels of resistance to amoxicillin, piperacillin, ticarcillin, and
cephalothin. The hydrolysis constants (kcat,
Km, Ki, and 50%
inhibitory concentration) confirmed the MIC results and showed that
FAR-1 activity is inhibited by clavulanic acid and at a low level by
tazobactam and sulbactam. Moreover, FAR-1
-lactamase hydrolyzes
aztreonam (at a low level) without significant activity against
ceftazidime, cefotaxime and imipenem. FAR-1 mature protein of molecular
mass ca 32 kDa, has less than 60% amino acid identity with any other
class A
-lactamases, being most closely related to PEN-A from
Burkholderia cepacia (52%). A
blaFAR-1-like gene was found in all studied
N. farcinica strains, underlining the constitutive origin
of this gene.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-Lactamases are distributed
almost ubiquitously in both gram-positive and gram-negative bacteria.
Based on sequence analysis, these
-lactamases are divided into four
molecular classes: A, B, C, and D (1, 11). Most of the
gram-positive
-lactamases belong to Ambler class A, especially those
derived from filamentous soil bacterial species, such as
Streptomyces, Actinomadura, Bacillus, and Mycobacterium spp. (39).
-lactamase activity is known to occur in several
nocardiae, such as N. asteroides, N. brasiliensis, and N. farcinica (4, 20, 23,
54).
-lactamases have been
reported for N. farcinica strains (52), while no
information is available concerning the molecular basis of
Nocardia
-lactamases except for a nonpathogen N. lactamdurans isolate (16), a species which, in fact,
now belongs to the Streptomyces genus.
-lactamase activity of
the N. farcinica VIC strain. We report the cloning and the
sequence analysis of a novel class A
-lactamase, named FAR-1, and
its distribution in several N. farcinica isolates.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
TABLE 1.
Bacterial strains and plasmids used in this study
-lactams
were determined alone or in combination with a fixed concentration of
clavulanic acid (2 µg/ml), tazobactam (4 µg/ml), or sulbactam (8 µg/ml).
Cloning experiments and analysis of recombinant plasmids. Genomic DNA of N. farcinica VIC was extracted as previously described (46). Restriction enzymes and other enzymes used in cloning experiments were from Amersham Pharmacia Biotech (Orsay, France). Fragments from Sau3AI partially digested genomic DNA were ligated into BamHI-restricted phagemid pBK-CMV (Stratagene, La Jolla, Calif.). Ligation was performed at a 1:2 vector/insert ratio at a final concentration of 200 ng of DNA in a ligation mixture containing 1 U of T4 DNA ligase at 4°C for 18 h. Recombinant plasmids were transformed by electroporation (Bio-Rad Gene Pulser II; Bio-Rad, Ivry-sur-Seine, France) into Escherichia coli JM109 electrocompetent cells. Antibiotic-resistant colonies were selected onto Trypticase soy (TS) agar plates containing amoxicillin (50 µg/ml) and kanamycin (30 µg/ml).
Recombinant plasmid DNA was obtained from 100 ml of TS broth overnight cultures grown in the presence of amoxicillin (100 µg/ml) at 37°C. The recombinant plasmid conferring resistance to amoxicillin was named pFAR-1. Plasmid DNAs were obtained by using Qiagen columns (Qiagen, Courtaboeuf, France). Plasmid mapping was performed after double restriction analysis. Fragment sizes were estimated according to the 1-kb and 100-bp molecular-weight DNA ladders (Amersham Pharmacia Biotech).DNA sequencing and protein analysis.
The 1,543-bp cloned DNA
fragment from pFAR-1 was sequenced on both strands by using an Applied
Biosystems sequencer (ABI377). The nucleotide sequence and the deduced
protein sequence were analyzed by using the software available over the
internet at the National Center of Biotechnology Information website
(41) and at Pedro's Biomolecular Research Tools website
(45). The Signalp program was used to screen for putative
signal peptide within the deduced protein sequence of FAR-1
-lactamase. Multiple protein sequence alignments were carried over
the internet at the University of Cambridge by using the program
CLUSTALW. The
-lactamases from the following strains were used for
comparisons: Streptomyces clavuligerus (Scla)
(46), Actinomadura sp. strain R39 (AR39)
(27), Burkholderia cepacia (PEN-A)
(56), Streptomyces lactamdurans (Slac)
(17), Streptomyces badius (Sbad) (21), Mycobacterium tuberculosis (Mtub) (24),
Mycobacterium fortuitum (blaF) (55),
Bacillus licheniformis (Blip) (42), B. cereus (Bcer) (36), B. amyloliquefaciens
(Bamy) (57), Klebsiella oxytoca (KOXY)
(22), Pseudomonas aeruginosa (PER-1)
(43), Staphylococcus aureus (PC-1)
(15), and E. coli (TEM-1) (13).
Hybridization experiments.
Genomic DNAs from
Actinomycetes strains were extracted as previously described
(33). Extracted DNAs were heat denatured for 5 min in
boiling water and then chilled on ice. Two microliters (corresponding
to about 2 µg of DNA) of denatured DNAs was applied to a nylon
membrane (Hybond N+; Amersham, Courtaboeuf, France) and UV
cross-linked for 2 min. The membrane was incubated for 1 h at
42°C in a prehybridization solution containing 100 µg of salmon
sperm DNA per ml, 5× Denhardt solution, 0.5% sodium dodecyl sulfate
(SDS), 3 × SSC and 30% formamide. The DNA probe consisting of
the 700-bp HincII-SmaI fragment from recombinant
plasmid pFAR-1 (Fig. 1) was radiolabelled
with [32P]dATP and [32P]dCTP with a
random-primer DNA labeling kit (Boehringer Mannheim, Meylan, France).
Hybridizations were performed at 42°C overnight in a Hybaid oven
(Hybaid, Teddington, United Kingdom). Then, two washes were performed
successively in the following two solutions: 2× SSC (1× SSC is 0.15 M
NaCl plus 0.015 M sodium citrate)-0.5% SDS for 15 min at 50°C and
1× SSC-0.5% SDS for 15 min at 50°C. Autoradiography was achieved
by exposing the membranes to Kodak films at
80°C for 18 h with
intensifying screens.
|
Isoelectric focusing.
Cultures of E. coli
(pFAR-1) were grown overnight at 37°C in 100 ml of TS broth
containing amoxicillin (100 µg/ml) and kanamycin (30 µg/ml).
N. farcinica cultures were grown in TS broth at 35°C for
72 h in an aerobic atmosphere. Bacterial suspensions were disrupted by sonification (two times for 20 s at 20 Hz; Vibra Cell
300 Phospholyser; Bioblock, Illkirch, France) and centrifuged (30 min,
10,000 × g, 4°C). The supernatants containing the
enzyme extract were subjected to isoelectric focusing (IEF) on a pH 3.5 to 9.5 ampholin polyacrylamide gel (Amersham Pharmacia Biotech) for
36 h at 10 W of constant power on a flatbed apparatus (FBE-3000; Amersham Pharmacia Biotech). The focused
-lactamases were detected by overlaying the gel with 1 mM nitrocefin (Oxoid, Paris, France) in
100 µM phosphate buffer (pH 7.0). The pI values were determined and
compared to those of known
-lactamases.
-Lactamase purification.
A 1-liter culture of E. coli JM109(pFAR-1) was grown overnight. The bacteria were
harvested for 10 min at 6,000 × g, and the bacterial
pellet was resuspended in 15 ml of 20 mM Bis-Tris
{[bis(2-hydroxyethyl imino]tris(hydroxymethyl) methane}, pH 5.5, at 4°C. The bacterial cells were disrupted by ultrasonic treatment as
described above. Residual cells and debris were removed by
centrifugation (48,000 × g for 30 min at 4°C).
Nucleic acids were precipitated by the addition of 0.2 M (7%
[vol/vol]) spermin and centrifugation at 100,000 × g
for 60 min at 4°C. The supernatant was dialyzed overnight at 4°C
against 2 liters of 50 mM Bis-Tris buffer (pH 6.0) and was loaded onto
a column (1.6 cm by 5 cm) of Q-Sepharose Fast Flow (Amersham Pharmacia
Biotech) equilibrated in the Bis-Tris buffer. The
-lactamase was
eluted with a linear NaCl gradient (0 to 500 mM). Fractions containing
activity, which was detected with nitrocefin, were obtained after 40 min at 0.3 ml/min at an NaCl concentration of 250 mM. The most active
fractions were pooled, dialyzed against 100 mM phosphate buffer (pH
7.0), concentrated (Centrisart-C30 microcentrifuge filters; Sartorius,
Goettingen, Germany), and stored at 4°C until enzymatic testing.
Purity was assessed by electrophoresis on an SDS-12% polyacrylamide
gel stained with Coomassie blue R-250 (Sigma Chemical Co., St. Louis,
Mo.). The total protein concentration was estimated with the Bio-Rad protein assay.
Kinetic measurements.
All kinetic measurements were
performed at 30°C in 100 mM sodium phosphate (pH 7.0). The initial
rates of hydrolysis were determined spectrophotometrically with a
Pharmacia UV2000 spectrophotometer. The following wavelengths and
absorption coefficients were used: for benzylpenicillin and
amoxicillin, 232 nm (
e = 1,100 M
1
cm
1); for ticarcillin, 235 nm (
e = 1,050 M
1 cm
1); for piperacillin, 235 nm
(
e = 1,070 M
1 cm
1); for
cephalothin, 262 nm (
e = 7,960 M
1
cm
1); for cephaloridin, 255 nm (
e = 9,360 M
1 cm
1); for ceftazidime, 260 nm (
e = 8,660 M
1 cm
1); for cefuroxime, 262 nm
(
e = 7,800 M
1 cm
1); for cefotaxime,
365 nm (
e = 6,260 M
1 cm
1); and for
aztreonam, 318 nm (
e = 640 M
1 cm
1).
Kinetic parameters were determined by recording the initial rates at
different substrate concentrations and by analyzing the results with
the regression analysis program LEONARA written by Cornish-Bowden
(17). The kcat and
Km values were estimated by using a nonlinear
least-squares regression method with dynamic weights (17).
The Ki and the 50% inhibitory concentration
(IC50) were determined, the latter value referring to the
clavulanate, tazobactam, and sulbactam concentrations that reduced the
hydrolysis rate of 100 µM benzylpenicillin by 50% under conditions
in which the enzyme was preincubated with various concentrations of
inhibitor for 5 min at 30°C before addition of the substrate.
Determination of relative molecular mass.
The relative
molecular mass of pFAR-1 plasmid
-lactamase was estimated by
SDS-PAGE analysis. Crude extracts and marker proteins were boiled for
10 min in a 1% SDS-3% mercaptoethanol solution and then subjected to
electrophoresis on a 12% gel (200 V, 4 h, room temperature)
(32). Renaturation of
-lactamase activity after the
denaturing electrophoresis was performed as described previously
(37).
Nucleotide sequence accession number. The nucleotide sequence data reported here will appear in the GenBank nucleotide database under accession number AF024601.
| |
RESULTS |
|---|
|
|
|---|
Strain isolation. N. farcinica VIC isolate was recovered from a brain abscess of a 53-year-old patient hospitalized in 1997 at the Hospital Bicêtre, Le Kremlin-Bicêtre, France. Prior to strain isolation, the patient had received empiric treatment with amoxicillin and gentamicin followed by treatment with imipenem, amikacin, and trimethoprim-sulfamethoxazole. Trimethoprim-sulfamethoxazole was continued for 6 months. Based on the preliminary results of disk diffusion agar assays, N. farcinica VIC was found to be resistant to penicillin, amoxicillin, ticarcillin, and piperacillin; to piperacillin plus tazobactam; to all cephalosporins (including ceftazidime and cefotaxime); and to aztreonam. It was susceptible to clavulanic acid plus either amoxicillin or ticarcillin and to imipenem. This clinical strain was also resistant to all aminoglycosides except amikacin and to macrolides but remained susceptible to sulfonamides, trimethoprim-sulfamethoxazole, and ciprofloxacin.
Cloning of the
-lactamase gene.
Partially
Sau3AI-digested DNA from N. farcinica VIC was
cloned into the BamHI site of pBK-CMV. Recombinant E. coli strains were selected onto amoxicillin- and
kanamycin-containing TS agar plates. Only two recombinant E. coli strains were obtained from which plasmids were extracted and
analyzed. The inserts were estimated to be of similar size (ca. 1.6 kb). A restriction map was generated for one of them, pFAR-1 (Fig. 1).
-Lactam resistance phenotype of E. coli harboring
pFAR-1.
Using a double-disk diffusion assay, E. coli
JM109(pFAR-1) revealed a moderate synergy between aztreonam and
clavulanic acid disks that was not observed with aztreonam combinations
containing tazobactam or sulbactam.
-lactams for E. coli JM109(pFAR-1) were
compared to those for N. farcinica VIC and for E. coli JM109 (Table 2). MIC values
were consistent with the results obtained from the disk diffusion
assay. Aztreonam, as opposed to the extended-spectrum cephalosporins,
had decreased MICs for E. coli JM109(pFAR-1). All
-lactams which had increased MICs for E. coli
JM109(pFAR-1) compared to E. coli JM109 had reduced MICs in
the presence of clavulanic acid, whereas tazobactam and sulbactam
failed to inhibit totally the
-lactamase activity.
|
Sequence analysis of the N. farcinica
-lactamase
gene.
The nucleotide sequence of the
-lactamase gene and its
deduced amino acid sequence are shown (Fig.
2). Analysis of the 1,543-bp insert for
coding regions revealed a sufficiently large open reading frame (ORF)
of 939 bp from nucleotide 252 to nucleotide 254. A putative ATG
initiation codon at positions 252 to 254 could have been retained but
no putative ribosome-binding site (RBS) was found immediately upstream.
Another putative GTG initiation codon at positions 261 to 263 was
preceded 9 bp upstream by a putative RBS (GAAGA, positions 249 to 253;
Fig. 2). Inverted repeats (positions 1225 to 1230 [CCGCGC]
and positions 1238 to 1244 [GCGCGG]) were found
downstream from the ORF and may act as a Rho-dependent transcriptional terminator. Conversely, no putative sequence for any bacterial promoter
was found upstream from the ORF.
|
-lactamases possessing a
serine-active site or penicillin-binding proteins (Fig. 2)
(29). Three structural elements characteristic of class A
-lactamases were found: serine-aspartic acid-asparagine (S-D-N) at
positions 130 to 132, glutamate-X-glutamate-leucine-asparagine (E-X-E-L-N) at positions 166 to 170, and lysine-threonine-glycine (K-T-G) at positions 234 to 236 (Fig. 2).
The comparison of FAR-1 indicated a relationship with several class A
-lactamases. The highest identities were found with the
-lactamases from B. cepacia (52%), S. lactamdurans (51%), Actinomadura sp. strain R39
(50%), M. tuberculosis (48%), S. clavuligerus (47%), S. badius (45%), B. amyloliquefaciens
(44%), B. licheniformis (43%), B. cereus
(42%), and K. oxytoca (43%). The amino acid identity with
a
-lactamase of M. fortuitum was only 37%.
Biochemical properties of FAR-1
-lactamase.
The specific
activity of purified FAR-1
-lactamase from E. coli JM109
was 6.5 µmol · min
1 · mg of
protein
1, determined with 100 µM benzylpenicillin as
the substrate. The overall recovery of FAR-1
-lactamase was 90%,
with a 30-fold purification. SDS-PAGE analysis revealed that FAR-1
-lactamase was very weakly expressed in E. coli JM109
harboring pFAR-1. The kinetic parameters of the
-lactamase FAR-1
revealed its strong activity against penicillins and early-generation
cephalosporins (Table 3). Aztreonam was a
substrate for FAR-1 even if its affinity and hydrolysis rates were low.
|
|
Distribution of
-lactamase FAR-1.
All the studied strains
belonging to N. farcinica species showed the same
-lactam
resistance profile except for amoxicillin-clavulanate, for which full
susceptibility or intermediate levels of resistance were observed (data
not shown). Moreover, N. farcinica CIP 96.0994 was resistant
to imipenem (MIC, 64 µg/ml). These strains were
-lactamase
positive as assessed by the positive results of the nitrocefin test.
IEF results showed that all strains produced a single
-lactamase of
pI 4.6 (data not shown). These strains showed positive dot blot
hybridization results when the 700-bp HincII-SmaI
fragment internal to blaFAR-1 was used as a
probe (Fig. 3).
|
| |
DISCUSSION |
|---|
|
|
|---|
N. farcinica VIC expresses a novel class A
-lactamase named FAR-1. The GC content and codon usage of its gene
corresponded to those of actinomycetes or taxonomically related
species. The determined molecular mass of 32 kDa corresponds to that of
class A
-lactamases. A protein comparison with other class A
-lactamases showed that FAR-1 had the greatest percentage of
identity with
-lactamases from actinomycetes (S. clavuligerus [47%], Actinomadura sp. strain R39
[50%], S. lactamdurans [51%], S. badius
[45%], and M. tuberculosis [48%]). It was also related
to class A
-lactamases from Bacillus sp. and,
surprisingly, from B. cepacia and K. oxytoca.
The comparison of inhibitor properties of FAR-1 to TEM-1 underlines
that clavulanic acid was less active against FAR-1 than against TEM-1
and that sulbactam was the weakest inhibitor of FAR-1 activity.
Analysis of the three-dimensional structure of some inhibitor-resistant
TEM derivatives highlights that some amino acids, such as Met69,
Met182, Arg244, Arg275, or Asn276, are important for inhibitor activity
(9, 10, 12, 13, 18, 28). Therefore, the amino acid changes
found in FAR-1 compared to TEM-1, i.e., Met69Arg (Met69 changed to
Arg), Met182Thr, Arg244Asn, or Arg275Asp, may explain its low
susceptibility to tazobactam and sulbactam (Fig. 2). Very few studies
show that
-lactamase activity is observed for all N. farcinica isolates (2, 52). According to Ambaye et al.
(2), N. farcinica strains are always resistant to
amoxicillin and susceptible to amoxicillin-clavulanate. Although the
amoxicillin-clavulanate combination may be used for treating
nocardiosis due to N. farcinica, any other
-lactam
combination with tazobactam or sulbactam should be excluded. Sulbactam
and tazobactam weak inhibitor activities against FAR-1 are similar to
those found against a
-lactamase from M. fortuitum
(3, 19). However, both of these enzymes are distantly
related to one another (55).
FAR-1 has specific hydrolysis activity toward aztreonam (at a low
level), while none was found towards ceftazidime, cefotaxime, and
imipenem. This characteristic is rather specific to FAR-1 compared to
the previously published gram-positive class A
-lactamases (38,
44). A few substitutions on TEM-1-derived class A
-lactamases, especially Glu104Lys, Ala238Gly, and Glu240Lys, have
been found to increase hydrolytic activity toward aztreonam,
ceftazidime, or cefotaxime (14, 39, 50). FAR-1 contains
identical or similar amino acid substitutions (Glu104Ser, Ala238Gly,
and Glu240Ser), which may explain, in part, the extension of the FAR-1
substrate profile (Fig. 2). Activity toward aztreonam and not toward
ceftazidime is also found for KOXY from K. oxytoca, with
both enzymes being weakly related (22).
This specific hydrolytic activity of FAR-1 toward the aztreonam remains
intriguing, however. It is known that soil actinomycetes produce both
-lactams and
-lactamases (16, 31, 39, 53), allowing
them to survive in the presence of these antibiotics (53).
The first example of naturally produced monobactams, named nocardicin
A, was extracted from a fermentation broth of a Nocardia strain (25, 30). Therefore, it may be expected that N. farcinica VIC produces both FAR-1 and a monobactam similar to aztreonam.
Additionally, if FAR-1 is cell wall bound and poorly excreted, it may
be a convenient protection tool against
-lactams. Indeed, FAR-1
structure analysis reveals a membrane lipoprotein lipid attachment
motif (LLGGC) (26). This agrees with the findings of
Steingrube et al., who have studied
-lactamase preparations of 31 N. farcinica strains (52). These culture
supernatants possessed a
-lactamase activity 25-fold lower than
those from cell extracts. Similar observations were recently reported
for the
-lactamases of M. fortuitum (58) and
N. asteroides (48).
FAR-1 activity does not, however, explain the entire
-lactam
resistance profile of N. farcinica strains, such as the
resistance to extended-spectrum cephalosporins (ceftriaxone or
cefotaxime). An undetected second
-lactamase could not be excluded,
although only one
-lactamase pI was identified from N. farcinica cultures. Most likely, as for other gram-positive
organisms, this resistance profile may be due to different
penicillin-binding protein affinities.
Our hybridization and IEF analysis showed that all of the tested N. farcinica isolates possessed a blaFAR-1-like gene (one of them, N. farcinica 95.06.84, hybridized only weakly), thus confirming the homogeneity of the antimicrobial susceptibility pattern of N. farcinica.
Based on the isolates tested by Provost et al. (47), the incidence of plasmid-bearing strains is significantly higher among N. farcinica strains than among N. asteroides strains without a relationship between plasmid presence and any specific antibiotic resistance phenotypes. The chromosomal or plasmid location of blaFAR-1 remains to be determined.
Although different
-lactamases have been characterized by IEF for
isolates of N. asteroides sensu stricto (48) and
N. brasiliensis (51, 59), much remains to be
known about this
-lactamase research field. None of these
-lactamases seems to correspond to FAR-1. Therefore, further work
should be directed toward the identification of the molecular structure
of
-lactamases from other Nocardia spp. and in order to
elucidate their relation in respect to their
-lactam resistance profile.
| |
ACKNOWLEDGMENT |
|---|
This work was financed by a grant from the Ministère de la Recherche et de l'Education Nationale (UPRES-JE 2227), Université Paris XI, Paris, France.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Service de Bactériologie-Virologie, Hôpital de Bicêtre, 78 rue du Général Leclerc, 94275 Le Kremlin-Bicêtre Cédex, France. Phone: 33-1-45-21-36-32. Fax: 33-1-45-21-63-40. E-mail: nordmann.patrice{at}bct.ap-hop-paris.fr.
| |
REFERENCES |
|---|
|
|
|---|
| 1. |
Ambler, R. P.
1980.
The structure of -lactamases.
Philos. Trans. R. Soc. Lond. Biol.
289:321-331 |
| 2. | Ambye, A., P. C. Khoner, P. C. Wollan, K. L. Roberts, G. D. Roberts, and F. R. Cockerill, III. 1997. Comparison of agar dilution, broth microdilution, disk diffusion, E-Test, and BACTEC radiometric methods for antimicrobial susceptibility testing of clinical isolates of the Nocardia asteroides complex. J. Clin. Microbiol. 35:847-852[Abstract]. |
| 3. | Amicosante, G., N. Franceschini, B. Segatore, A. Oratore, L. Fattorini, G. Orefici, J. Van Beeumen, and J. M. Frère. 1990. Characterization of a beta-lactamase produced in Mycobacterium fortuitum D316. Biochem. J. 271:729-734[Medline]. |
| 4. | Beaman, B. L., P. Boiron, L. Beaman, G. H. Brownell, K. Schaal, and M. E. Gombert. 1992. Nocardia and nocardiosis. J. Med. Vet. Mycol. 30:317-331. |
| 5. | Bjellqvist, B., B. Basse, E. Olsen, and J. E. Celis. 1994. Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions. Electrophoresis 15:529-539[Medline]. |
| 6. | Bjellqvist, B., G. J. Hughes, C. Pasquali, N. Paquet, F. Ravier, J. C. Sanchez, S. Frutiger, and D. F. Hochstrasser. 1993. The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 14:1023-1031[Medline]. |
| 7. | Boiron, P. Unpublished data. |
| 8. | Boiron, P., F. Provost, G. Chevrier, and B. Dupont. 1992. Review of nocardial infections in France 1987 to 1990. Eur. J. Clin. Microbiol. Infect. Dis. 11:709-714[Medline]. |
| 9. | Bonomo, R. A., C. G. Dawes, J. R. Knox, and D. M. Shlaes. 1995. Beta-lactamase mutations far from the active site influence inhibitor binding. Biochim. Biophys. Acta 1247:121-125[Medline]. |
| 10. |
Bush, K., and G. A. Jacoby.
1997.
Nomenclature of TEM -lactamases.
J. Antimicrob. Chemother.
39:1-3 |
| 11. |
Bush, K.,
G. A. Jacoby, and A. A. Medeiros.
1995.
A functional classification scheme for -lactamases and its correlation with molecular structure.
Antimicrob. Agents Chemother.
39:1211-1233[Medline].
|
| 12. | Canica, M. M., M. Barthélémy, L. Gilly, R. Labia, R. Krishnamoorthy, and G. Paul. 1997. Properties of IRT-14 (TEM-45), a newly characterized mutant of TEM-type beta-lactamases. Antimicrob. Agents Chemother. 41:374-378[Abstract]. |
| 13. | Canica, M. M., C. Y. Lu, R. Krishnamoorthy, and G. C. Paul. 1997. Molecular diversity and evolution of bla TEM genes encoding beta-lactamases resistant to clavulanic acid in clinical E. coli. J. Mol. Evol. 44:57-65[Medline]. |
| 14. |
Cantu, C.,
W. Huang, and T. Palzkill.
1996.
Selection and characterization of amino acid substitutions at residues 237-240 of TEM-1 beta-lactamase with altered substrate specificity for aztreonam and ceftazidime.
J. Biol. Chem.
271:22538-22545 |
| 15. |
Chan, P. T.
1986.
Nucleotide sequence of the Staphylococcus aureus PC1 beta-lactamase gene.
Nucleic Acids Res.
14:5940 |
| 16. |
Coque, J. J. R.,
P. Liras, and F. Martin.
1993.
Genes for a -lactamase, a penicillin-binding protein and a transmembrane protein are clustered with the cephamycin biosynthetic genes in Nocardia lactamdurans.
EMBO J.
12:631-639[Medline].
|
| 17. | Cornish-Bowden, A. 1995. Graphs of the Michaelis-Menten equation, p. 30-37. In Fundamentals of enzyme kinetics. Portland Press, Inc., Seattle, Wash. |
| 18. | Farzaneh, S., E. B. Chaibi, J. Peduzzi, M. Barthélémy, R. Labia, J. Blazquez, and F. Baquero. 1996. Implication of Ile-69 and Thr-182 residues in kinetic characteristics of IRT-3 (TEM-32) beta-lactamase. Antimicrob. Agents Chemother. 40:2434-2436[Abstract]. |
| 19. | Fattorini, L., G. Amicosante, D. Fiorentino, N. Franceschini, L. Di Marzio, A. Oratore, and G. Orefici. 1989. Inhibitors and inactivators of beta-lactamase from Mycobacterium fortuitum. J. Chemother. 1:293-297[Medline]. |
| 20. | Filice, G. A., and G. L. Simpson. 1984. Management of Nocardia infections, p. 49-64. In J. S. Remington, and M. N. Swartz (ed.), Current clinical topics in infectious diseases. McGraw-Hill Book Co., New York, N.Y. |
| 21. |
Forsman, M.,
B. Haggstrom,
L. Lindgren, and B. Jaurin.
1990.
Molecular analysis of -lactamases from four species of Streptomyces: comparison of amino acid sequences with those of other -lactamases.
J. Gen. Microbiol.
136:589-598 |
| 22. | Fournier, B., P. H. Lagrange, and A. Philippon. 1996. Beta-lactamase gene promoters of 71 clinical strains of Klebsiella oxytoca. Antimicrob. Agents Chemother. 39:1365-1368[Abstract]. |
| 23. |
Gombert, M. E.,
L. B. Berkowitz,
T. M. Aulicino, and L. Dubouchet.
1990.
Therapy of pulmonary nocardiosis in immunocompromised mice.
Antimicrob. Agents Chemother.
34:1766-1768 |
| 24. |
Hackbarth, C.,
I. Unsal, and H. F. Chambers.
1997.
Cloning and sequence analysis of a class A -lactamase from Mycobacterium tuberculosis H37Ra.
Antimicrob. Agents Chemother.
41:1182-1185[Abstract].
|
| 25. | Hashimoto, M., T. Komori, and T. Kamiya. 1976. Nocardicin A and B, novel monocyclic beta-lactam antibiotics from a Nocardia species. J. Am. Chem. Soc. 12:3023-3025. |
| 26. | Hayashi, S., and H. C. Wu. 1990. Lipoproteins in bacteria. J. Bioenerg. Biomembr. 22:451-471[Medline]. |
| 27. |
Houba, S.,
S. Willem,
C. Duez,
C. Molitor,
J. Dusart,
J. M. Frère, and J. M. Ghuysen.
1989.
Nucleotide sequence of the gene encoding the active-site serine -lactamase from Actinomadura R39.
FEMS Microbiol. Lett.
65:241-246.
|
| 28. |
Imtiaz, U.,
E. Billings,
J. R. Knox,
E. K. Manavathu,
S. A. Lerner, and S. Mobashery.
1993.
Inactivation of class-A -lactamases by clavulanic acid: the role of arginine-244 in a proposed nonconcerted sequence events.
J. Am. Chem. Soc.
115:4435-4442.
|
| 29. |
Joris, B.,
P. Ledent,
O. Dideberg,
E. Fonze,
J. Lamotte-Brasseur,
J. A. Kelly,
J. M. Ghuysen, and J. M. Frère.
1991.
Comparison of the sequences of class A -lactamases and of the secondary structure elements of penicillin-recognizing proteins.
Antimicrob. Agents Chemother.
35:2294-2301 |
| 30. | Kojo, H., Y. Mine, M. Nishida, S. Goto, and S. Kuwahara. 1988. Nature of monocyclic beta-lactam antibiotic nocardicin A to beta-lactamases. Microbiol. Immunol. 32:119-130[Medline]. |
| 31. |
Kurai, S.,
H. Urabe, and H. Ogawara.
1995.
Cloning, sequencing and site-directed mutagenesis of -lactamase gene from Streptomyces fradiae Y59.
Antimicrob. Agents Chemother.
39:260-263[Abstract].
|
| 32. | Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685[Medline]. |
| 33. | Laurent, F., A. Carlotti, P. Boiron, J. Villard, and J. Freney. 1996. Ribotyping: a tool for taxonomy and identification of the Nocardia asteroides complex species. J. Clin. Microbiol. 34:1079-1082[Abstract]. |
| 34. | Laurent, F., F. Provost, and P. Boiron. Rapid identification of clinically relevant Nocardia to the genus level with 16S rDNA polymerase chain reaction. Submitted for publication. |
| 35. | Lechevalier, M. 1989. Nocardioforms actinomycetes, p. 2348-2404. In S. T. Williams, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, 9th ed. The Williams & Wilkins Co., Baltimore, Md. |
| 36. | Maggwick, P. J., and S. G. Waley. 1987. Beta-lactamase I from Bacillus cereus. Structure and site-directed mutagenesis. Biochem. J. 248:657-662[Medline]. |
| 37. |
Massida, O.,
G. M. Rossolini, and G. Satta.
1991.
The Aeromonas hydrophila cphA gene: molecular heterogeneity among class B metallo- -lactamase.
J. Bacteriol.
173:4611-4617 |
| 38. |
McNeil, M. M., and J. M. Brown.
1994.
The medically important aerobic actinomycete: epidemiology and microbiology.
Clin. Microbiol. Rev.
7:357-417 |
| 39. |
Medeiros, A. A.
1997.
Evolution and dissemination of -lactamases accelerated by generations of -lactam antibiotics.
Clin. Infect. Dis.
24:S19-S45.
|
| 40. | National Committee for Clinical Laboratory Standards. 1993. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically. Approved standard M7-A3. National Committee for Clinical Laboratory Standards, Villanova, Pa. |
| 41. | National Center of Biotechnology Information Website. 11 December 1998, revision date. Software. [Online.] http://www.ncbi.nlm.nih.gov. [8 March 1999, last date accessed.] |
| 42. |
Neugebauer, K.,
R. Sprengel, and H. Schaller.
1981.
Penicillinase from Bacillus licheniformis: nucleotide sequence of the gene and implications for the biosynthesis of a secretory protein in a gram-positive bacterium.
Nucleic Acids Res.
9:2577-2588 |
| 43. |
Nordmann, P., and T. Naas.
1994.
Sequence analysis of PER-1 extended-spectrum beta-lactamase from Pseudomonas aeruginosa and comparison with class A beta-lactamases.
Antimicrob. Agents Chemother.
38:104-114 |
| 44. |
Pastor, N.,
D. Pinero,
A. M. Valdes, and X. Soberon.
1990.
Molecular evolution of class A -lactamases: phylogeny and patterns of sequence conservation.
Mol. Microbiol.
4:1957-1965[Medline].
|
| 45. | Pedro's BioMolecular Research Tools Website. 16 June 1995, revision date. Software. [Online.] http://www.fmi.ch/biology/research_tools.html. [8 March 1999, last date accessed.] |
| 46. |
Perez-Llarena, F.,
J. F. Martin,
M. Gallieni,
J. J. Coque,
J. L. Fuente,
J. M. Frère, and P. Liras.
1997.
The bla gene of the cephamycin cluster of Streptomyces clavuligerus encodes a class A beta-lactamase of low enzymatic activity.
J. Bacteriol.
179:6035-6040 |
| 47. |
Provost, F.,
M. V. Blanc,
B. L. Beaman, and P. Boiron.
1996.
Occurrence of plasmids in pathogenic strains of Nocardia.
J. Med. Microbiol.
45:344-348 |
| 48. |
Scopetti, F.,
L. Fattorini,
N. Franceschini,
G. Amicosante, and G. Orefici.
1997.
Non-inducible, mainly cell associated -lactamase from Nocardia asteroides strain 108.
J. Antimicrob. Chemother.
40:5-11 |
| 49. |
Smego, R. A.,
M. B. Moeller, and H. A. Gallis.
1983.
Trimethoprim-sulfamethoxazole therapy for Nocardia infections.
Arch. Intern. Med.
143:711-718 |
| 50. |
Sowek, J. A.,
S. B. Singer,
S. Ohringer,
M. F. Malley,
T. J. Dougherty,
J. Z. Gougoutas, and K. Bush.
1991.
Substitution of lysine at position 104 or 204 of TEM-1 -lactamase enhances the effect of serine-164 substitution on hydrolysis or affinity for cephalosporins and the monobactam aztreonam.
Biochemistry
30:3179-3188[Medline].
|
| 51. |
Steingrube, V. A.,
R. J. Wallace, Jr.,
B. A. Brown,
Y. Pang,
B. Zeluff,
L. C. Steele, and Y. Zhang.
1991.
Acquired resistance of Nocardia brasiliensis to clavulanic acid related to a change in -lactamase following therapy with amoxicillin-clavulanic acid.
Antimicrob. Agents Chemother.
35:524-528 |
| 52. |
Steingrube, V. A.,
R. J. Wallace, Jr.,
B. A. Brown,
Y. Zhang,
L. C. Steele,
G. Young, and D. R. Nash.
1993.
Partial characterization of Nocardia farcinica -lactamases.
Antimicrob. Agents Chemother.
37:1850-1855 |
| 53. |
Strynadka, N. J. C.,
S. E. Jensen, and K. Johns.
1994.
Structural and kinetic characterization of a -lactamase-inhibitor protein.
Nature
368:657-660[Medline].
|
| 54. | Sugar, A. M., R. S. Chahal, and D. A. Stevens. 1983. A cephalosporin active in vivo against Nocardia: efficacy of cefotaxime in murine model of acute pulmonary nocardiosis. J. Hyg. 91:421-427. |
| 55. | Timm, J., M. G. Perilli, C. Duez, J. Trias, G. Orefici, L. Fattorini, G. Amicosante, A. Oratore, B. Joris, J. M. Frère, A. P. Pugsley, and B. Gicquel. 1994. Transcription and expression analysis, using lacZ and phoA gene fusions, of Mycobacterium fortuitum beta-lactamase genes cloned from a natural isolate and a high-level beta-lactamase producer. Mol. Microbiol. 12:491-504[Medline]. |
| 56. | Trepanier, S., A. Prince, and A. Huletsky. 1997. Characterization of the penA and penR genes of Burkholderia cepacia 249 which encode the chromosomal class A penicillinase and its Lys-R-Type transcriptional regulator. Antimicrob. Agents Chemother. 41:2399-2405[Abstract]. |
| 57. | Van Dijl, J. M., A. De Jong, A. Nauta, G. Venema, and S. Bron. GenBank accession number Z35653). Unpublished data. |
| 58. | Wagner, B., L. Fattorini, M. Wagner, S. H. Jin, R. Stracke, G. Amicosante, N. Franceschini, and G. Orefici. 1995. Antigenic properties and immunoelectron microscopic localization of Mycobacterium fortuitum beta-lactamase. Antimicrob. Agents Chemother. 39:739-745[Abstract]. |
| 59. | Wallace, R. J., Jr., D. R. Nash, W. K. Johnson, L. C. Steele, and V. A. Steingrube. 1987. Beta-lactamase in Nocardia brasiliensis is mediated by beta-lactamase and reversed in the presence of clavulanic acid. J. Infect. Dis. 156:959-966[Medline]. |
| 60. | Wallace, R. J., Jr., E. J. Septimus, T. W. Williams, R. H. Conklin, T. K. Satterwhite, M. B. Bushby, and D. C. Hollowell. 1982. Use of trimethoprim-sulfamethoxazole for treatment of infections due to Nocardia. Rev. Infect. Dis. 4:315-325[Medline]. |
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»