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Antimicrobial Agents and Chemotherapy, March 2000, p. 583-589, Vol. 44, No. 3
Centre de Recherche en Infectiologie,
Université Laval, Québec, Canada G1V 4G2
Received 27 May 1999/Returned for modification 7 September
1999/Accepted 17 December 1999
It has been shown in enterobacteria that mutations in
ampD provoke hyperproduction of chromosomal Most strains of Pseudomonas
aeruginosa produce an inducible, chromosomally encoded AmpC
Chromosomal AmpC The inducible expression of AmpC in P. aeruginosa is also
under the control of the AmpR and AmpD regulators (19, 27). A putative ampG gene in P. aeruginosa PAO1 has
been cloned recently and has been characterized by our group as well
(T. Y. Langaee and A. Huletsky, Abstr. 97th Gen. Meeting Am. Soc.
Microbiol., abstr. A-3, p. 1, 1997). Therefore, the genetic system
which controls AmpC expression in P. aeruginosa appears to
be similar to that of enterobacteria. However, the mutations which lead
to the altered expression of AmpC in P. aeruginosa have not
yet been identified. The aim of this study was to determine the genetic
locus responsible for derepressed AmpC in P. aeruginosa by
sequencing the ampD genes of selected laboratory mutants and
clinical isolates having various levels of Bacterial strains and plasmids.
The strains and plasmids
used in this study are described in Tables
1 and 2.
E. coli strains JRG582 and STC172 and plasmid pEC1C were
kindly provided by S. T. Cole (Institut Pasteur, Paris, France).
Plasmids pUCP24 and pUCP26 (42) and plasmid pEX100T (36) were obtained from H. P. Schweizer (Colorado State
University, Fort Collins). P. aeruginosa strains
Ps50SAI+, Ps50SAI
0066-4804/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Inactivation of the ampD Gene in
Pseudomonas aeruginosa Leads to Moderate-Basal-Level and
Hyperinducible AmpC
-Lactamase Expression
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-lactamase,
which confers to these organisms high levels of resistance to
-lactam antibiotics. In this study, we investigated whether this
genetic locus was implicated in the altered AmpC
-lactamase
expression of selected clinical isolates and laboratory mutants of
Pseudomonas aeruginosa. The sequences of the
ampD genes and promoter regions from these strains were
determined and compared to that of wild-type ampD from
P. aeruginosa PAO1. Although we identified numerous
nucleotide substitutions, they resulted in few amino acid changes. The
phenotypes produced by these mutations were ascertained by
complementation analysis. The data revealed that the ampD
genes of the P. aeruginosa mutants transcomplemented
Escherichia coli ampD mutants to the same levels of
-lactam resistance and
-lactamase expression as wild-type
ampD. Furthermore, complementation of the P. aeruginosa mutants with wild-type ampD did not
restore the inducibility of
-lactamase to wild-type levels. This
shows that the amino acid substitutions identified in AmpD do not cause
the altered phenotype of AmpC
-lactamase expression in the P. aeruginosa mutants. The effects of AmpD inactivation in P. aeruginosa PAO1 were further investigated by gene replacement.
This resulted in moderate-basal-level and hyperinducible expression of
-lactamase accompanied by high levels of
-lactam resistance. This
differs from the stably derepressed phenotype reported in
AmpD-defective enterobacteria and suggests that further change at
another unknown genetic locus may be causing total derepressed AmpC
production. This genetic locus could also be altered in the P. aeruginosa mutants studied in this work.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-lactamase (24, 33, 34) belonging to molecular class C
(1, 15) and to functional group 1 (3). Usually
this enzyme is expressed at very low levels, but
-lactam inducers
can raise these levels (23, 40). In the course of therapy,
-lactam antibiotics can select P. aeruginosa mutants that
overproduce AmpC in the absence of inducers. Because these strains are
resistant to most antipseudomonal penicillins and cephalosporins,
treatment failure can result (26). Three phenotypes of
altered AmpC expression have been found among clinical isolates of
P. aeruginosa. They are moderate basal levels and
constitutive
-lactamase expression, moderate basal levels and
hyperinducible
-lactamase production, and high basal levels and
constitutive
-lactamase expression (stably derepressed) (4,
34).
-lactamases are also ubiquitous in enterobacteria,
with the exception of salmonellae, and are inducible in all but
Escherichia coli and shigellae (26). In species
such as Citrobacter freundii and Enterobacter
cloacae, three genes are involved in AmpC induction, a process
that is intimately linked to peptidoglycan recycling (31).
These genes are ampR, which encodes a transcriptional
regulator of the LysR family; ampD, which encodes a
cytosolic N-acetyl-anhydromuramyl-L-alanine
amidase and specifically hydrolyzes 1,6-anhydromuropeptide; and
ampG, which encodes a transmembrane protein and functions as
a permease for 1,6-anhydromuropeptide, the signal molecule for
induction of AmpC expression (6, 10, 12, 13, 17).
Inactivation of ampD results in the cytoplasmic accumulation
of 1,6-anhydromuropeptide and constitutive overproduction of AmpC
(6, 12, 13, 21). In enterobacteria, as in P. aeruginosa, three phenotypes of altered AmpC expression have been
associated with
-lactam resistance, and two of these phenotypes have
been linked to mutations in ampD (2, 7, 16, 18, 34,
39).
-lactamase expression and
comparing their sequences to that of wild-type ampD. We also
report the results of studies of E. coli ampD mutants
complemented by the ampD genes of these derepressed P. aeruginosa mutants.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
con, M1405, M2297P, and
M2297
con (5, 14, 22, 23) were kindly provided
by D. M. Livermore (St. Bartholomew's and the Royal London School of
Medicine and Dentistry, London, United Kingdom). Strain
Ps50SAI
con is a spontaneous mutant of strain
Ps50SAI
, which is an
N-methyl-N'-nitro-N-nitrosoguanidine
(NTG) mutant of strain Ps50SAI+ (5). Strain
PAO4254 (blaK) was provided from H. Matsumoto (Shinshu
University School of Medicine, Matsumoto, Japan) and is a derivative of
strain PAO1, which was obtained by NTG treatment as described by
Matsumoto et al. (28). The altered phenotype of
-lactamase expression in strain PAO4254 has been associated with the
genetic locus blaK (29) mapped to 26 min on the
PAO1 chromosome (9). E. coli DH5
was used for
transformation and propagation of recombinant plasmids.
TABLE 1.
Bacterial strains and plasmids used in this study
TABLE 2.
MICs of
-lactam antibiotics and specific activities of
AmpC in P. aeruginosa and its mutant strains
Cloning and sequencing of the ampD and
ampE genes from P. aeruginosa mutants.
Two
oligonucleotide primers (AmpD-14 and AmpD-15) located upstream and
downstream of the P. aeruginosa PAO1 ampDE operon
were designed from its published sequence (19).
Oligonucleotides were synthesized on a 394 DNA/RNA synthesizer (PE
Applied Biosystems, Foster City, Calif.). The sequences of these
primers were as follows: AmpD-14,
5'-GGGAATTCCTTTCCTCGAAGCATGTCG-3'; and AmpD-15,
5'-GGGATAGAGTACGGTCTTC-3'. Amplification was performed with
lysates of P. aeruginosa mutants (Table 2) prepared as
previously described (19), with Pfu DNA polymerase (Stratagene, La Jolla, Calif.) in a Perkin-Elmer DNA thermal
cycler. The cycling parameters were as follows: 95°C for 5 min and
then 30 cycles of 94°C for 1 min, 54°C for 2 min, and 72°C for 3 min. Two independent PCRs were performed for each P. aeruginosa lysate. The amplified DNA fragments were cloned into the SmaI site of the pBGS19+ vector
(38), and the resulting recombinant plasmids were named pHUL4DE-M1 to -M6, according to the strain origin, and transformed in
E. coli DH5
(Table 1). One transformant from each PCR was selected.
Construction of the P. aeruginosa AmpD-defective mutant. The gene replacement technique described by Schweizer (36) was used for construction of the P. aeruginosa PAO1 AmpD-defective mutant. First, the 2,091-bp HincII fragment containing ampD from the pHUL4DE-1 plasmid (19) was cloned into the SmaI site of pEX100T (36) to generate the pHUL4DE-3 plasmid. To construct the insertion plasmid, pHUL4DE-4, the ampD gene on pHUL4DE-3 was mutated by insertion of the 1,650-bp DraI fragment of pUCP24 (42) containing the Gmr-encoding gene into the unique NruI site in the ampD gene. The pHUL4DE-4 plasmid was transformed in the E. coli mobilizing strain S17-1 (37). This plasmid was then mobilized in P. aeruginosa PAO1, and recipient cells in which the ampD::Gmr gene had replaced the chromosomal ampD gene were selected by the method of Schweizer and Hoang (36).
To confirm the replacement of the ampD gene by the ampD::Gmr gene, chromosomal DNA from strain PAO1 and the PAO1 Gmr strain harboring a derepressed phenotype of AmpC expression was isolated and digested with PstI. Southern blot analysis of the digested chromosomal DNA fragments was performed by using the 1,379-bp internal ampD fragment from pHUL4DE-1 as a probe (data not shown).Susceptibility test. MICs of each antibiotic were determined by the microdilution method in TSB with an inoculum of 105 CFU per ml in multiple-well plates. The MIC was defined as the lowest concentration of antibiotic preventing growth after 18 to 24 h of incubation at 37°C.
Induction of
-lactamase.
Bacterial cells containing
plasmids were grown in media containing appropriate plasmid selections
to an optical density of 0.8 U at 420 nm and induced with cefoxitin.
Cells were washed once and then resuspended in 50 mM potassium
phosphate buffer (pH 7.0). Crude extracts were prepared by sonication
as previously described (41).
-Lactamase assays.
-Lactamase activity was determined
by spectrophotometry following hydrolysis of nitrocefin, as previously
described (41). Specific activity was expressed in nanomoles
of nitrocefin hydrolyzed per minute per milligram of protein. All
induction experiments were performed in duplicate, and the results
presented are averages of two determinations.
Computer techniques. Sequence analysis and alignment were performed by using the GCG software package of the University of Wisconsin Genetics Computer Group.
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RESULTS |
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|
|
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Phenotype of AmpC expression in P. aeruginosa
mutants.
The P. aeruginosa strains used in this study
exhibited three different phenotypes of
-lactamase expression and
-lactam susceptibility (Table 2) and were taken from clinical and
laboratory sources. Strains Ps50SAI+ and M2297P showed the
same phenotype of enzyme expression as wild-type PAO1, with
low-basal-level and inducible
-lactamase production and low MICs of
ampicillin and cefotaxime (5, 23). Strain PAO4254 had
moderate-basal-level and hyperinducible
-lactamase production, and
the MIC of ampicillin (fourfold), but not of cefotaxime, was higher.
Finally, strains Ps50SAI
con, M1405, and
M2297
con exhibited high-basal-level and constitutive
-lactamase production (stably derepressed) and a high level of
resistance to both ampicillin and cefotaxime (4- to 32-fold increase in
MIC) (14, 22, 23).
Sequence analysis of the ampD gene from P. aeruginosa mutants.
Figure
1
shows the nucleotide sequences and
translated amino acids of the ampD gene from the P. aeruginosa mutants. When compared with wild-type PAO1, no
nucleotide substitution could be identified within the promoter regions
in any of the strains studied (data not shown). Eleven nucleotide
substitutions, resulting in only four amino acid changes at positions
85, 136, 148, and 175, were found in the structural ampD
genes. Two amino acid substitutions were specific to one strain: Ala-85
for Gly was unique to strain Ps50SAI+, and Ala-136 for Val
was unique to strain Ps50SAI
con. The last two mutations
were found in more than one strain: the Gly-148-for-Ala substitution
was identified in strains M2297
con, M2297P,
Ps50SAI+, and Ps50SAI
con, and the
Ser-175-for-Leu change was found in both M2297
con and
M2297P.
|
Complementation of E. coli ampD mutants.
To
determine the ability of the ampD genes of the P. aeruginosa mutants to complement E. coli ampD
mutations, plasmids pHUL4DE-M1 to -M6 (carrying the ampDE
region from the various P. aeruginosa mutants [Table 1])
were transformed in the moderate-basal-level and hyperinducible
E. coli STC172 ampD mutant (11)
containing plasmid pEC1C. Plasmid pEC1C carries the ampC and
ampR genes of E. cloacae (30).
Induction assays and MIC determination (Table 3) revealed that both wild-type
ampD and ampD genes from mutant strains
transcomplemented the E. coli ampD mutant, resulting in low
levels of
-lactam resistance and wild-type
-lactamase expression (low basal level and inducibility). The basal and induced levels of
enzyme activity for cells containing ampD from mutants,
however, were in general either slightly lower or slightly higher than those for cells containing wild-type ampD.
|
con
were also transformed in the stably derepressed E. coli
JRG582 ampD deletant containing plasmid pEC1C. The data
showed that they both transcomplemented the ampD deletion to
low
-lactam resistance and low basal levels of
-lactamase
expression and inducibility. The basal and induced levels of enzyme
activity in cells containing ampD from mutants were four- to
sixfold lower, however, than those of cells containing wild-type
ampD.
Complementation of the P. aeruginosa mutants with
wild-type ampD.
The pHUL4DE26 plasmid (carrying the
wild-type ampDE region of P. aeruginosa PAO1) was
transformed in the one hyperinducible and three derepressed
P. aeruginosa mutants to determine the capacity of wild-type
ampD to transcomplement their mutations. This plasmid was
constructed by cloning the 2.6-kb EcoRI fragment of plasmid pHUL4DE-PH (19) into the EcoRI site of plasmid
pUCP26 (42). As can be seen in Table
4, the basal and induced levels of enzyme activity as well as the MICs of ampicillin and cefotaxime for mutant
cells containing plasmid pHUL4DE26 were comparable to those of cells
carrying either the control plasmid pUCP26 or no plasmid.
|
Phenotype of the P. aeruginosa AmpD-defective
mutant.
To determine the effects of the ampD mutation
on
-lactam resistance and
-lactamase expression, a P. aeruginosa AmpD-defective mutant was constructed by gene
replacement. The data revealed (Table 4) that inactivation of AmpD
caused 6- and 32-fold increases in the MIC of ampicillin and
cefotaxime, respectively, as well as a moderate-basal-level and
hyperinducible phenotype of
-lactamase expression.
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DISCUSSION |
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It was our intention to determine whether or not genetic
alterations leading to the derepressed phenotypes of P. aeruginosa mutants could be linked to ampD. Four
mutants were used: three expressed high basal levels of
-lactamase
constitutively (stably derepressed) (M1405,
M2297
con, and Ps50SAI
con), and one
had moderate-basal-level and hyperinducible
-lactamase expression
(PAO4254). The low-basal-level and inducible parent strains M2297P,
Ps50SAI+, and PAO1 of mutants M2297
con,
Ps50SAI
con, and PAO4254, respectively, were also
characterized. It was previously confirmed that these strains produce
only the AmpC
-lactamase (5, 23). The susceptibilities of
the strains to ampicillin and cefotaxime were generally related to the
basal (noninduced) level of AmpC activity, which reflects the degree of
derepression. Despite this, the MIC of cefotaxime for strain PAO4254
which has a moderate basal level of enzyme activity (11-fold increase)
was not higher than that of the low-basal-level wild-type strain PAO1, despite a 4-fold increase in the MIC of ampicillin. However, the data
showed that an increase in the MIC of cefotaxime was observable only in
strains with a stably derepressed phenotype, with a greater than
35-fold increase in the basal level of enzyme activity. This can be
explained by the lower Vmax of AmpC for this
antibiotic compared to that for ampicillin (25, 33).
Many substitutions were identified in the nucleotide and translated
amino acid sequences of the ampD gene from the various P. aeruginosa mutants (Fig. 1). Some nucleotide
substitutions which were present in both parent and mutant strains
revealed that variations in the ampD gene sequences were
strain dependent. More nucleotide changes were found in strains of the
Ps50SAI series which could have resulted from the NTG treatment used to
induce genetic changes (5). The Ser-175-Leu substitution in
AmpD was specific to strains of the M2297 series, but since it was
found in both strains M2297P and M2297
con, it cannot
cause the stably derepressed phenotype of the latter strain. The
Ala-136-Val substitution was unique to the stably derepressed strain
Ps50SAI
con and could be associated with this phenotype.
However, complementation studies showed that the ampDE locus
of all of the strains studied transcomplemented the E. coli
STC172 ampD mutation and E. coli JRG582
ampDE deletion to levels of susceptibility and enzyme
activities both comparable to those of cells containing wild-type
ampD. This strongly suggests that the ampD gene
products of the derepressed strains have wild-type enzyme activity and
cannot be at the origin of these phenotypes. The slight variations in
the levels of enzyme activity among the different E. coli
transformants could result from differences in codons due to the
various nucleotide substitutions in ampD thus affecting the
expression levels of this gene (8).
We also investigated whether the wild-type ampDE could
complement mutations of the derepressed P. aeruginosa
mutants and restore wild-type AmpC expression. The absence of
complementation further confirms that mutations in these strains are
not linked to the ampDE locus. The slight decreases in basal
and induced levels of AmpC expression in P. aeruginosa
mutants containing wild-type ampDE might result from
overexpression of ampD, due to the presence of the pHUL4DE26
plasmid. Indeed, ampD encodes an
N-acetyl-anhydromuramyl-L-alanine amidase which
cleaves 1,6-anhydromuropeptide, the signal molecule for AmpC expression
(10, 11, 14). An increase in AmpD would decrease the amount
of 1,6-anhydromuropeptides in cells and reduce
-lactamase expression.
In enterobacteria, three out of four phenotypes of derepressed AmpC
-lactamase expression
hyperinducible (higher-basal-level and
hyperinducible
-lactamase production), stably derepressed (high-basal-level and constitutive
-lactamase expression), and temperature sensitive (loss of inducibility at nonpermissive
temperature)
have been associated with mutations in ampD
(7, 16, 18, 39). The partially derepressed phenotypes
(moderate-basal-level and hyperinducible
-lactamase expression) have
not been associated with any alteration in ampD
(39). Most mutations that completely inactivate AmpD and
lead to stably derepressed phenotypes are caused by large deletions,
but point mutations have also been associated with these phenotypes. We
recently published an amino acid alignment of the AmpD proteins in
which the conserved regions common to the AmpD proteins and cell wall
hydrolases were highlighted (13, 19). According to the amino
acid numbering of the AmpD proteins of this alignment, two of the point
mutations (Val-37-Gly and Asp-169-Gly) identified in AmpD of stably
derepressed mutants (39) are located beside highly conserved
His-38 and Pro-170. Other mutations that give rise to hyperinducible
phenotypes and partially inactivated AmpD activity have been located in
other conserved regions of cell wall hydrolases (7, 16, 39). Two changes (Trp-99-Arg and Tyr-106-Asp) are located in the core region of these enzymes, while three others (Asp-125 for Gly, Asp-131
for Gly, and Ala-163 for Gly) are located outside of the core region
(13, 19). In this study, contrary to what has been described
in derepressed enterobacteria, all of the changes identified in AmpD of
the P. aeruginosa mutants were associated with nonconserved
amino acids (19). This can explain why, in these strains,
AmpD has wild-type enzyme activity.
Since none of the mutations identified in ampD were
associated with altered AmpC expression in the P. aeruginosa
mutants, we investigated the effect of AmpD inactivation. An
AmpD-defective mutant was constructed and was shown to exhibit a
moderate-basal-level and hyperinducible
-lactamase expression which
differs from the stably derepressed phenotype reported in
enterobacteria (7, 16, 39). These data are in accordance
with the recent work of Bagge et al. (N. Bagge, J. I. A. Campbell, O. Ciofu, T. Y. Langaee, A. Huletsky, and N. Høiby,
Abstr. 99th Gen. Meeting Am. Soc. Microbiol., abstr. A-71, p. 15, 1999). Therefore, despite the close relationships among the various
AmpC regulator genes (AmpR, AmpD, and AmpG) in P. aeruginosa
and in enterobacteria (19, 27, 31; Langaee and
Huletsky, Abstr. 97th Gen. Meeting Am. Soc. Microbiol., 1997), it seems
that the induction systems of AmpC in these organisms are not exactly
the same. In fact, the mutation frequency in P. aeruginosa
is 10
7 for partial derepression, and it is
10
9 for full derepression, whereas in enterobacteria, the
frequency of mutations for fully (stably) derepressed strains is
10
5 to 10
7 (26). Livermore
(25) suggested that this difference could be due to the fact
that in P. aeruginosa, the stably derepressed mutants may
emerge via a second mutation in cells that are already partially
derepressed. Data from Matsumoto also suggested that mutations in
two loci in the PAO1 chromosome are necessary for complete derepression
(H. Matsumoto, personal communication). Indeed, four loci on the PAO1
chromosome have been shown to affect AmpC induction (blaI,
blaJ, blaK, and blaL) (9,
29). The blaI, blaJ, and blaK
mutants have moderate-basal-level and hyperinducible
-lactamase
expression, whereas the blaL mutant is noninducible (28; H. Matsumoto, personal communication). In this
study, we showed that the blaK locus (in strain PAO4254)
mapped to 26 min on the PAO1 chromosome (9) was not
associated with ampD.
In this work, we clearly demonstrated that in some of the P. aeruginosa mutant strains studied, the derepressed phenotypes of AmpC expression were not associated with mutations in the ampDE locus. A recent study from Campbell et al. (4) also revealed that the altered AmpC expression in various isolates of P. aeruginosa from cystic fibrosis patients was not associated within the ampC-ampR locus. Therefore, although our data showed that inactivation of ampD results in partially derepressed AmpC expression, we suggest that further genetic change at another bla locus may be causing total derepressed AmpC production. This bla locus could also be involved in the derepressed phenotypes of some of the strains described in this study. The characterization of these bla loci is currently in progress.
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ACKNOWLEDGMENTS |
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We thank S. T. Cole for the gift of the E. coli strains and plasmids used for complementation work in this study and D. M. Livermore and H. Matsumoto for the gift of P. aeruginosa mutant strains. We also thank H. P. Schweizer for the gift of plasmids pUCP24, pUCP26, and pEX100T.
This work was supported by the Canadian Cystic Fibrosis Foundation and, in part, by the Canada's Networks of Centres of Excellence (CBDN).
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FOOTNOTES |
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* Corresponding author. Mailing address: Centre de Recherche en Infectiologie, CHUQ, Pavillon CHUL, 2705, Boul. Laurier, RC-709, Ste-Foy, Québec, Canada G1V 4G2. Phone: (418) 654-2705. Fax: (418) 654-2715. E-mail: ann.huletsky{at}crchul.ulaval.ca.
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