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Antimicrobial Agents and Chemotherapy, December 2001, p. 3355-3361, Vol. 45, No. 12
Service de Bactériologie-Virologie,
Hôpital de Bicêtre, Assistance
Publique/Hôpitaux de Paris, Faculté de Médecine
Paris-Sud, 94275 Le Kremlin-Bicêtre
Cedex,1 and Service de Microbiologie,
Hôpital Robert Debré, Assistance
Publique/Hôpitaux de Paris, Faculté de Médecine
Xavier-Bichat, 75018 Paris,2 France
Received 18 December 2000/Returned for modification 11 April
2001/Accepted 21 August 2001
Escherichia coli ILT-1, Klebsiella
pneumoniae ILT-2, and K. pneumoniae
ILT-3 were isolated in May 1999 in Paris, France, from a rectal swab of
a hospitalized 5-month-old girl. These isolates had a clavulanic
acid-inhibited substrate profile that included expanded-spectrum
cephalosporins. The MICs of cefotaxime were higher for E. coli ILT-1 and K. pneumoniae ILT-2 than for K. pneumoniae ILT-3, while the opposite was found for the MICs of
ceftazidime. Genetic and biochemical analyses revealed that E. coli ILT-1 and K. pneumoniae ILT-2 produced the
CTX-M-18 Several clavulanic
acid-inhibited Ambler class A expanded-spectrum The first CTX-M The CTX-M This report identifies two isogenic CTX-M-type Bacterial strains and plasmids.
The bacterial strains and
plasmids used in the present work are listed in Table
1. E. coli ILT-1,
Klebsiella pneumoniae ILT-2, and K. pneumoniae
ILT-3 clinical isolates were identified by the API 20E system
(bioMérieux, Marcy l'Etoile, France).
0066-4804/01/$04.00+0 DOI: 10.1128/AAC.45.12.3355-3361.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
CTX-M-Type Extended-Spectrum
-Lactamase That
Hydrolyzes Ceftazidime through a Single Amino Acid Substitution in
the Omega Loop
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-lactamase, while K. pneumoniae ILT-3 produced
the CTX-M-19
-lactamase. The amino acid sequence of the
CTX-M-18
-lactamase differed from that of the CTX-M-9
-lactamase
by an Ala-to-Val change at position 231, while CTX-M-19 possessed
an additional Pro-to-Ser change at position 167 in the omega loop of
Ambler class A enzymes. The latter amino acid substitution may explain
the CTX-M-19-mediated hydrolysis of ceftazidime, which has not been
reported for other CTX-M-type enzymes. The
blaCTX-M-18 and
blaCTX-M-19 genes were located on transferable plasmids that varied in size (ca. 60 and 50 kb,
respectively) but that showed similar restriction patterns.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-lactamases (ESBLs)
have been reported, mostly in members of the family
Enterobacteriaceae, in addition to the TEM- and SHV-type
ESBLs (21, 22). Among them, the CTX-M-type
-lactamases are typical ESBLs. The designation "CTX" refers to their powerful spectrum of hydrolysis of cefotaxime (32). The CTX-M
-lactamases hydrolyze ceftazidime with a very low catalytic
efficiency. Thus, CTX-M
-lactamases confer to both wild-type
and laboratory-obtained enterobacterial hosts high levels
resistance to cefotaxime, ceftriaxone, and aztreonam but have only
marginal effects on the MIC of ceftazidime.
-lactamase (CTX-M-1/MEN-1) was characterized in
Escherichia coli strains isolated from German and Italian patients (4-6). This family of enzymes now comprises 14 members: CTX-M-1 to CTX-M-12, Toho-1, and Toho-2 (7, 23, 28,
32). These enzymes share 71 to 98% amino acid sequence
identities. Escherichia coli and Salmonella
enterica serotype Typhimurium are the enterobacterial species most
frequently reported to produce the CTX-M
-lactamases (28,
32). The CTX-M-type
-lactamase-producing strains are endemic
in Latin America, Japan, and some areas in Eastern Europe (6, 9,
12, 14, 24, 32). Rare reports signal the presence of CTX-M
enzymes in enterobacterial isolates from other countries such as
France, Kenya, Spain, and Greece (18, 28, 31).
-lactamase genes are mostly located on plasmids, and
Toho-1-like
-lactamase genes have also been found to be located on
chromosomes (35). The progenitors of some of these
plasmid-mediated enzymes could be the chromosomally encoded
-lactamases of the enterobacterial species Kluyvera
ascorbata (GenBank accession number no. AJ251722).
-lactamases from
enterobacterial strains isolated from the same patient. One of them was
peculiar since it hydrolyzed ceftazidime much more than cefotaxime, a
property not reported previously for a CTX-M-type enzyme.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
TABLE 1.
Strains and plasmids used in this study
PFGE. Plug preparation was done according to the instructions of Bio-Rad (Ivry/Seine, France). Whole-cell DNAs from K. pneumoniae ILT-2 and ILT-3 were digested with XbaI at 37°C overnight. Electrophoresis in a 1% agarose gel in 0.5× Tris-borate-EDTA buffer was performed with a CHEF DRII apparatus (Bio-Rad). Migration conditions, staining, and chromosomal fingerprints compared and assigned to pulsed-field gel electrophoresis (PFGE) types and subtypes were as described previously (13).
Susceptibility testing.
Antibiotic-containing disks were
used for antibiotic susceptibility testing by the disk diffusion assay
(Sanofi-Diagnostics Pasteur, Marnes-la-Coquette, France), as described
previously (26). The double-disk synergy test was
performed with ceftazidime-, cefotaxime-, aztreonam-, and
amoxicillin-clavulanic acid-containing disks on Mueller-Hinton (MH)
agar plates; and the results were interpreted as described previously
(16). MICs were determined by an agar dilution technique
on MH agar (Sanofi-Diagnostics Pasteur) with an inoculum of
104 CFU per spot, as described previously
(27). All plates were incubated at 37°C for 18 h.
The MICs of the
-lactams were determined alone or in combination
with a fixed concentration of clavulanic acid (2 µg/ml) or tazobactam
(4 µg/ml). MIC results were interpreted according to the guidelines
of the National Committee for Clinical Laboratory Standards after
incubation at 37°C for 18 h (21).
PCR, cloning experiments, recombinant plasmid analysis, and DNA
sequencing.
Whole-cell DNAs from E. coli ILT-1 and
K. pneumoniae ILT-2 and ILT-3 were extracted as described
previously(27). They were used as templates in standard
PCR experiments (29) with sets of laboratory-designed
primers for detection of class A
-lactamase genes and their
extended-spectrum derivatives, blaTEM,
blaSHV, blaPER-1,
blaPER-2,
blaVEB-1,
blaToho-1,
blaToho-2,
blaSFO-1, blaGES-1,
blaCTX-M-2 (26), and
blaCTX-M-3 (primer CTXM-A,
5'-CGCTTTGCGATGTGCAG-3'; primer CTXM-B,
5'-ACCGCGATATCGTTGGT-3').
Plasmid content, conjugation, and hybridization.
Plasmid
DNAs from E. coli ILT-1, K. pneumoniae ILT-2 and
ILT-3, and recombinant clones were extracted with Maxi columns (Qiagen, Courtaboeuf, France). Plasmid DNAs were analyzed by electrophoresis on
a 0.8% agarose gel (Gibco BRL-Life Technologies, Cergy-Pontoise, France) containing 0.15 µg of ethidium bromide per ml for 18 h at 90 V. A 1-kb DNA ladder (Gibco BRL-Life Technologies) was
used as a reference DNA size standard. Conjugation experiments were performed between E. coli ILT-1, K. pneumoniae
ILT-2 and ILT-3, and nalidixic acid- and rifampin-resistant E. coli JM109 in solid and liquid media at 37°C, as described
previously (27). Transconjugants were selected on TS agar
plates containing 150 µg of rifampin per ml or 100 µg of nalidixic
acid and 100 µg of amoxicillin per ml. In order to locate the
-lactamase genes, plasmid DNAs of E. coli ILT-1,
K. pneumoniae ILT-2 and ILT-3, and their E. coli transconjugants were extracted with a Qiagen Maxi column and
restricted with HindIII and BamHI. The DNA
fragments were run on a 0.8% agarose gel, transferred onto a nylon
membrane (Hybond N+; Amersham Pharmacia Biotech,
Orsay, France) by the Southern technique (29), and
hybridized with a PCR-generated probe of 550 bp whose sequence was
specific for a region internal to the
blaCTX-M-3 sequence
(primers CTX-M-A and CTX-M-B) and a PCR-generated probe of 850 bp whose
sequence was specific for a region internal to the
blaTEM sequence (27). The
nonradioactive enhanced chemiluminescence random prime system
(Amersham Pharmacia Biotech) was used to label the DNA probes and for detection.
-Lactamase extracts and purification.
Cultures of
E. coli JM109 harboring recombinant plasmids pMA-1 and pMA-3
were grown overnight at 37°C in 4 liters of TS broth containing
amoxicillin (100 µg/ml) and chloramphenicol (30 µg/ml). The
-lactamase extracts were obtained as described previously (26) and were resuspended in 30 ml of 20 mM Tris-HCl (pH
9.2). Similarly,
-lactamase extracts were obtained from 10-ml
cultures of E. coli ILT-1, K. pneumoniae ILT-2
and ILT-3, and their E. coli transconjugants and were
subsequently resuspended in 0.1 ml of sodium phosphate buffer (pH 7).
-lactamase extracts of cultures of E. coli
JM109(pMA-1) or E. coli JM109(pMA-3) were dialyzed
overnight against 20 mM Tris-HCl (pH 9.2) at 4°C in order to
eliminate spermine and to adjust the pH to 9.2. The enzyme extracts
were loaded onto a preequilibrated Q-Sepharose column (1.6 by 5 cm;
Amersham Pharmacia Biotech) with the same buffer. The resulting enzyme
extract was recovered in the flowthrough and was dialyzed against 50 mM
phosphate buffer (pH 6) overnight at 4°C. This extract was then
loaded onto a preequilibrated S-Sepharose column, and the proteins were
eluted with a linear NaCl gradient (0 to 0.5 M). The
-lactamase
activity was eluted with NaCl at a concentration of 50 mM in phosphate
buffer. The fractions with the highest
-lactamase activities were
pooled and dialyzed against 50 mM phosphate buffer (pH 7), prior to
concentration 10-fold with Centrisart-C30 microcentrifuge filters
(Sartorius, Göttingen, Germany). The purified
-lactamase
extracts were used for determination of enzymatic activity.
Their purity was estimated by using sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (29).
IEF analysis.
-Lactamase extracts from cultures of
E. coli ILT-1, K. pneumoniae ILT-2 and ILT-3, and
their E. coli transconjugants and purified enzymes from
cultures of E. coli JM109 harboring recombinant plasmid
pMA-1 or pMA-3 were subjected to analytical isoelectric focusing (IEF)
analysis on a polyacrylamide gel with ampholine (pH 3.5 to 9.5),
as described previously (27). The focused
-lactamases were detected by overlaying the gel with 1 mM nitrocefin (Oxoid, Dardilly, France) in 100 mM phosphate buffer (pH 7.0). The pI values
were determined and compared to those of known
-lactamases.
Kinetic parameters.
Purified
-lactamase extracts were
used for kinetic measurements performed at 30°C in 100 mM sodium
phosphate (pH 7.0). The initial rates of hydrolysis were determined
with an ULTROSPEC 2000 UV spectrophotometer (Amersham Pharmacia
Biotech) and were analyzed by computer with Swift II software (Amersham
Pharmacia Biotech). The kcat and
Km values were determined by analyzing
-lactam hydrolysis under initial rate conditions by using the Eadie-Hoffstee linearization of the Michaelis-Menten equation, as
described previously (27).
-lactamase from E. coli JM109 harboring pMA-1
and E. coli JM109 harboring pMA-3 were obtained as
described previously (27). One unit of enzyme activity was
defined as the activity which hydrolyzed 1 µM benzylpenicillin per
min per mg of protein. Specific activities were determined with 100 µM benzylpenicillin as the substrate. Additionally, the specific
activity of nonpurified
-lactamase extract from cultures of E. coli JM109 harboring pMA-1 or pMA-3 was determined with 100 µM
piperacillin, a substrate that was hydrolyzed similarly by
-lactamases from cultures of E. coli JM109(pMA-1) or
E. coli JM109(pMA-3). The protein content was measured
by the Bio-Rad DC Protein assay.
Nucleotide sequence accession numbers.
The nucleotide
sequence data for the CTX-M-18 and CTX-M-19
-lactamases
reported in this paper have been assigned GenBank nucleotide sequence
database accession nos. AF325133 and AF325134, respectively.
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RESULTS |
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Characterization of clinical isolates and preliminary antibiotic susceptibility testing. E. coli ILT-1 and K. pneumoniae ILT-2 and ILT-3 were isolated from a 5-month-old girl in May 1999 at the Robert Debré Hospital (Paris, France) as a result of systematic rectal screening of patients admitted to the pediatric intensive care unit (ICU) for multidrug-resistant bacteria. The child was born in Vietnam and was transferred to the cardiovascular unit of Insitute Jacques Cartier (Paris, France), where she was hospitalized for 15 days for surgical cure of intraventricular communication. During the follow-up after surgery, she developed cardiovascular failure, for which she received treatment with cefotaxime, vancomycin, and netilmicin for 1 week. Rectal screening for multidrug-resistant bacteria performed 2 weeks after her admission to the ICU was positive for ESBL-producing isolates, but the rectal screening performed on the day of her admission was negative. No other enterobacterial isolate with a similar ESBL resistance profile was identified in the same ICU concomitantly or during the following 4-month period (data not shown).
Antibiotic susceptibility testing by disk diffusion suggested that the extended-spectrum cephalosporin resistance profile was due to the presence of an ESBL. Synergies were observed between clavulanate and ceftazidime, cefotaxime, and aztreonam (data not shown). E. coli ILT-1 and K. pneumoniae ILT-2 were more resistant to cefotaxime than to ceftazidime (Table 2). On the other hand, K. pneumoniae ILT-3 was more resistant to ceftazidime than to cefotaxime (Table 2). E. coli ILT-1 and K. pneumoniae ILT-2 and ILT-3 were also resistant to amikacin, gentamicin, kanamycin, netilmicin, tobramycin, and chloramphenicol and were susceptible to sulfonamides and fluoroquinolones. E. coli ILT-1 and K. pneumoniae ILT-2 were susceptible to rifampin, while K. pneumoniae ILT-3 was resistant to rifampin (data not shown).
|
PCR experiments and cloning of
-lactamase genes.
Preliminary PCR amplification experiments with primers designed to
amplify several internal fragments of ESBL genes gave positive results
for blaTEM and
blaCTX-M-3 for each clinical strain and positive results for blaSHV for the two
K. pneumoniae clinical isolates. External primers for
blaCTX-M-3 were used to PCR amplify a
900-bp fragment of a blaCTX-M-3-like gene
by using whole-cell DNAs of E. coli ILT-1 and K. pneumoniae ILT-2 and ILT-3 as templates. The corresponding PCR
amplimers were cloned into the SrfI site of pPCRScript-Cam
(SK+), giving rise to recombinant plasmids pMA-1, pMA-2, and
pMA-3, respectively.
DNA sequencing.
Analysis of the inserted nucleotide
sequences from recombinant plasmids pMA-1, pMA-2, and pMA-3
showed in each case an 876-bp open reading frame encoding a
291-amino-acid protein. On the basis of the protein alignments, two
CTX-M-type enzymes were identified: CTX-M-18 encoded by pMA-1 and pMA-2
and CTX-M-19 encoded by pMA-3. CTX-M-18 differed from the previously
characterized CTX-M-9 enzyme by an alanine-to-valine substitution at
position 231, according to the designation of class A enzymes of Ambler
et al. (1), and CTX-M-19 had an additional
proline-to-serine substitution at position 167 (Fig.
1). The latter substitution lay close to conserved residue Glu166 in the omega loop of class A
-lactamases. CTX-M-18 and CTX-M-19, like CTX-M-9, share 88% amino acid identity with the most closely related plasmid-mediated CTX-M-type
enzyme, Toho-2, and 80% amino acid identity with the
chromosome-encoded penicillinase of K. ascorbata (GenBank
accession number no. AJ251722).
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Kinetic parameters.
The specific activities of the purified
CTX-M-18 and CTX-M-19
-lactamases from cultures of
E. coli JM109(pMA-1) and E. coli JM109(pMA-3) were 30 and 10 µmol · min
1 · mg of
protein
1, respectively, when 100 µM
benzylpenicillin was used as the substrate. Their overall rate of
recovery was 70% with 60-fold purification. Their purities were
estimated to be 90%. The kinetic parameters for the purified
CTX-M-18
-lactamase showed that it had strong activity against most
-lactams including cefotaxime, ceftriaxone, cefepime, and
cefpirome (Table 3). The catalytic
activity of CTX-M-19 was lower than that of CTX-M-18 for all substrates
except piperacillin and ceftazidime. The activity of CTX-M-18 against ceftazidime was not detectable (Table 3). In contrast, kinetic parameters could be calculated for ceftazidime hydrolysis for CTX-M-19.
However, the specific activity of CTX-M-19 for ceftazidime remained
low (0.5 mU/mg). The catalytic activity of CTX-M-19 against aztreonam,
cefepime, and cefpirome was not detectable.
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Transfer of antibiotic resistance, plasmid analysis, and
hybridizations.
E. coli transconjugants with E. coli ILT-1 and K. pneumoniae ILT-2 and ILT-3 as
donors were obtained at high frequencies. Each transconjugant showed an
ESBL phenotype. Transconjugants of E. coli ILT-1 and
K. pneumoniae ILT-2 harbored plasmids pILT-1 and
pILT-2 of ca. 60 kb, respectively, with indistinguishable restriction patterns (Fig. 2A).
Transconjugants of K. pneumoniae ILT-3 had plasmid
pILT-3 of ca. 50 kb. Plasmid pILT-3 was related to plasmids pILT-1
and pILT-2 but differed by at least deletions of 1.6- and
3-kb HindIII-restricted fragments, deletion of an additional 3-kb HindIII-restricted fragment, and deletion of
ca.10 kb of a BamHI-restricted fragment (Fig. 2A).
Plasmids pILT-1, pILT-2, and pILT-3 conferred the same pattern of
resistance to non-
-lactam antibiotics, including resistance to
gentamicin, kanamycin, netilmicin, tobramycin, and chloramphenicol.
HindIII- and BamHI-restricted plasmids
pILT-1, pILT-2, and pILT-3 hybridized with an internal probe for
blaCTX-M on DNA fragments of
different sizes. However, for a given restriction digest, the
hybridizing DNA fragments were identical for plasmids pILT-1 to pILT-3
(Fig. 2B). Similarly, hybridization of HindIII- and
BamHI-restricted plasmids pILT-1 to pILT-3 with an internal
probe for blaTEM-1 gave different
hybridizing DNA fragments that were identical for all plasmids
for a given restriction digest (Fig. 2C). These results showed that
restricted DNA fragments of pILT-1, pILT-2, and pILT-3 that contained
either the blaTEM or the
blaCTX-M gene were different and
that these natural plasmids were structurally related. Additionally, probes for blaTEM or
blaCTX-M hybridized at the
migration position of chromosomal DNA (Fig. 2B and C).
|
IEF analysis.
IEF analysis showed that E. coli ILT-1, K. pneumoniae ILT-2 and ILT-3,
and their transconjugants expressed two
-lactamases with pIs of 5.4 and 8. The
-lactamase with a pI of 5.4 corresponded to
TEM-1. The
-lactamase with a pI of 8 corresponded to CTX-M-18 for E. coli ILT-1, K. pneumoniae ILT-2,
their transconjugants, E. coli JM109 harboring recombinant
plasmid pMA-1, and E. coli JM109 harboring recombinant
plasmid pMA-2 and to CTX-M-19 for K. pneumoniae ILT-3,
its transconjugant, and E. coli JM109(pMA-3). An
additional
-lactamase with a pI of 7.6 likely corresponded to the
chromosomally encoded SHV-type
-lactamase of K. pneumoniae for isolates ILT-2 and ILT-3.
Detailed analysis of
-lactam susceptibility.
The MICs of
-lactams for the CTX-M-18- or CTX-M-19-producing strains are shown
in Table 2. These results indicate that CTX-M-18- and
CTX-M-19-producing strains were resistant to penicillins and restricted- and expanded-spectrum cephalosporins. For the
CTX-M-18-producing strains (E. coli ILT-1, K. pneumoniae ILT-2, their E. coli transconjugants, E. coli JM109 harboring pMA-1, and E. coli JM109
harboring pMA-2), the MICs of cefotaxime and aztreonam were higher than
those of ceftazidime. On the contrary, the MICs of ceftazidime were
higher than the MICs of cefotaxime and aztreonam for the CTX-M-19
producers [K. pneumoniae ILT-3, its transconjugant, and
E. coli JM109(pMA-3)]. Moreover, the MICs of cefepime
and cefpirome for the CTX-M-18 producers were higher than those for the
CTX-M-19 producers. The addition of clavulanic acid and tazobactam
strongly reduced the MICs of penicillins and cephalosporins for the
CTX-M-18 and CTX-M-19 producers. The differences in the MICs of
-lactams for the CTX-M-18 and CTX-M-19 producers could be related
not only to the catalytic activities of the enzymes but also to
differences in folding or the stabilities of the proteins. Indeed,
although the kinetic parameters for CTX-M-18 and CTX-M-19 were very
similar for piperacillin (Table 3), the specific activities of
nonpurified extracts of cultures of E. coli
JM109(pMA-1/CTX-M-18) and of E. coli
JM109(pMA-3/CTX-M-19) were 840 and 433 mU · mg of
protein
1, respectively, with 100 µM
piperacillin as the substrate.
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DISCUSSION |
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The work described here further characterized biochemically two CTX-M-type enzymes, CTX-M-18 in E. coli and K. pneumoniae and CTX-M-19 in K. pneumoniae. CTX-M enzymes have been identified mostly from E. coli and Salmonella sp. strains and rarely from K. pneunomiae, whereas the TEM- and SHV-type extended-spectrum derivatives have been identified mostly from K. pneumoniae (22, 32). Identification of blaCTX-M-18 in E. coli and K. pneumoniae signals the interspecies transfer of a plasmid-mediated CTX-M gene between isolates in the fecal flora of the same patient.
The CTX-M
-lactamases have been reported in Europe, mostly in
Eastern Europe. CTX-M-9 was recently identified in an E. coli isolate in Spain and was also likely present in 22 additional E. coli strains and in 1 S. enterica serotype
Virchow strain in the same hospital in Barcelona, Spain
(28). Although CTX-M-1 (MEN-1) was identified from a
clinical sample of an Italian patient hospitalized in France
(4), CTX-M-3-producing Enterobacter cloacae was
the first CTX-M-producing isolate recovered in France from a French
patient (11). In the present study, the enterobacterial isolates were from a Vietnamese patient hospitalized in France several
times and consecutively in different French hospitals. Thus, it is
difficult to define reliably the geographical origins of the isolated strains.
On the basis of their amino acid sequences, CTX-M enzymes may be
divided into three clusters (28, 32) that differ by 20 to
25%. The first cluster groups CTX-M-1, CTX-M-3, CTX-M-10, and CTX-M-12; the second cluster groups CTX-M-2, CTX-M-4 to CTX-M-7, and
Toho-1; and the third cluster groups Toho-2, CTX-M-9, and now CTX-M-18
and CTX-M-19. The plasmid-mediated CTX-M-18 and CTX-M-19 enzymes are
related to the chromosomal penicillinase of K. ascorbata, underlining their possible origin. All characteristic substitutions assumed to be implicated in expanded-spectrum cephalosporin
hydrolysis of the CTX-M enzymes are also present in CTX-M-18 and
CTX-M-19, for example, Ser237, Thr244, and Arg276 (32).
Our work has characterized the biochemical properties of
CTX-M-18, which were found to be similar to those of the other
cefotaxime-hydrolyzing CTX-M enzymes and which may correspond to those
partially reported for CTX-M-9 (28). Tazobactam exhibited
a stronger inhibitory activity than clavulanic acid against
CTX-M-18 and CTX-M-19, as previously reported for the CTX-M enzymes
(32). The catalytic efficiencies of CTX-M-18 and
CTX-M-19 for several
-lactams remained lower than those reported for
CTX-M-1 and CTX-M-5, the only other two CTX-M enzymes for which
detailed kinetic data have been reported (4, 9).
Analysis of the crystal structure of Toho-1 shows that the amino acids
of the omega loop play the main role in its substrate profile for
cephalosporins (15). The omega loop amino acids (residues 161 to 179) of CTX-M-9 and CTX-M-18 are identical to those of
Toho-1. Thus, results of analysis of the crystal structure of the
Glu166Ala mutant of Toho-1 (15) may be applied to
analysis of CTX-M-9 and CTX-M-18. The Toho-1
-lactamase has fewer
hydrogen bond interactions between the omega loop and the
-
domain in the vicinity of Asn170 and Asp240 compared to the numbers of
interactions for the restricted-spectrum
-lactamase of
Bacillus licheniformis (15). Moreover, no
hydrogen bond connects both the N and the C termini of the omega
loop between the amino acid at position 160 and the
threonine at position 181. The CTX-M-9, CTX-M-18, and CTX-M-19
-lactamases, like the Toho-1
-lactamase, have a Phe residue
at position 160 that cannot form a hydrogen bond with the threonine at
position 181. The same Phe residue cannot interact with Asp157. The
CTX-M-9, CTX-M-18, and CTX-M-19
-lactamases, like the Toho-1
-lactamase, retain a hydrogen bond between Asp179 and Arg164, as in
some narrow-spectrum class A
-lactamases; in addition, they retain
the interactions between Lys73 and Glu166 and between Asn136 and Glu166
that help to maintain the structural integrity of the omega loop. The
expanded-spectrum hydrolytic activity of the CTX-M-9, CTX-M-18, and
CTX-M-19
-lactamases, like that of the Toho-1
-lactamase, may be
related to an increased flexibility of the omega loop.
The most interesting aspect of our work is the
CTX-M-19-mediated resistance to ceftazidime. The
proline-to-serine change in CTX-M-19 occurs in the omega loop
structure of class A
-lactamases (Fig. 1). No natural class A
-lactamases have a serine residue at position 167 like CTX-M-19
does. Amino acid substitutions in the omega loop of extended-spectrum
TEM- and SHV-type enzymes selected in vivo were identified only at
position 164 or 179, breaking the hydrogen bond between Arg164
and Asp179 (2, 8, 19, 20, 33). Site-specific mutagenesis
experiments showed that a Pro-to-Gly substitution at position 167 in TEM-1 and PSE-4 increased the hydrolytic activities of
the enzymes against ceftazidime (25, 30). It is
possible that Ser167 in CTX-M-19 may enlarge the binding site for
ceftazidime in the catalytic site of the enzyme. Interestingly, Ser167
in CTX-M-19 is located next to Glu166, an amino acid residue that is
known to promote activation of the hydrolytic water molecule for
hydrolysis of the acyl enzyme intermediate in class A
-lactamases
(3).
The substrate profile of CTX-M-19 was extended to ceftazidime but its
catalytic efficiency for the other extended-spectrum cephalosporins was lower than that obtained for the other CTX-M-type enzymes. The variabilities of the substrate profiles of
expanded-spectrum cephalosporins (except ceftazidime) have been
reported for CTX-M enzymes such as CTX-M-2 and its derivative with a
point mutation, CTX-M-4 (12). The kinetic parameters of
CTX-M-19 against ceftazidime revealed a surprisingly low catalytic
efficiency. A similar discrepancy between MIC results and kinetic
data has been reported in other cases, such as for ceftazidime and
OXA-10 derivatives of Ambler class D (10). Interestingly,
misfolding was found for a TEM-1
-lactamase with a Pro167Thr
mutation (34). Similarly, the Pro167Ser change in CTX-M-19
may the explain instability of this protein and the rapid loss of its
activity (data not shown)
The blaCTX-M-18 and
blaCTX-M-19 genes were located on
self-transferable and structurally related plasmids of enterobacterial isolates from the same patient, thus suggesting the in vivo selection of a CTX-M-19 producer that conferred resistance to ceftazidime. The
blaCTX-M-18 and
blaCTX-M-19 genes were associated
with blaTEM-1 on structurally
related plasmids. Although clinical strains that produce two
-lactamase genes have been reported, plasmids that carry two
-lactamases genes have not been extensively described. Interestingly, the probes for
blaCTX-M and
blaTEM also hybridized at
the chromosomal position (Fig. 2B and C). This result may indicate a
transposon location of the
blaCTX-M-18 and
blaCTX-M-19 genes, as suggested
for Toho-1-like genes (35), which is being studied in our laboratory.
Finally, this work showed once again that novel ESBLs can be identified from clinical specimens of patients hospitalized in ICUs and that the substrate profiles of the CTX-M enzymes may be extended to ceftazidime. Thus, detection of CTX-M producers should not be based solely on the fact that the MICs of cefotaxime are higher than those of ceftazidime.
| |
ACKNOWLEDGMENTS |
|---|
This work was financed by a grant from the Ministères de
l'Education Nationale et de la Recherche (grant UPRES, JE-2227), Université Paris XI, Paris, and the French network on
-lactamase research, "Les
-Lactamases; de l'Observation
Clinique à la Structure."
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Service de Bactériologie-Virologie, Hôpital de Bicêtre, 78 rue du Général Leclerc, 94275 Le Kremlin-Bicêtre Cedex, France. Phone: 33-1-45-21-36-32. Fax: 33-1-45-21-63-40. E-mail: nordmann.patrice{at}bct.ap-hop-paris.fr.
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