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Antimicrobial Agents and Chemotherapy, February 2001, p. 393-400, Vol. 45, No. 2
0066-4804/01/$04.00+0 DOI: 10.1128/AAC.45.2.393-400.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
SJ-3366, a Unique and Highly Potent Nonnucleoside
Reverse Transcriptase Inhibitor of Human Immunodeficiency Virus
Type 1 (HIV-1) That Also Inhibits HIV-2
Robert W.
Buckheit Jr.,1,*
Karen
Watson,1
Valerie
Fliakas-Boltz,1
Julie
Russell,1
Tracy L.
Loftus,1
Mark C.
Osterling,1
Jim A.
Turpin,1
Luke A.
Pallansch,1
E. Lucile
White,2
J.-W.
Lee,3
S.-H.
Lee,3
J.-W.
Oh,3
H.-S.
Kwon,3
S.-G.
Chung,3 and
E.-H.
Cho3
Infectious Disease Research Department,
Southern Research Institute, Frederick, Maryland
217011; Biochemistry Department,
Southern Research Institute, Birmingham, Alabama
352552; and Samjin Pharmaceutical
Co., Ltd., Seoul, Korea3
Received 19 June 2000/Returned for modification 30 August
2000/Accepted 25 October 2000
 |
ABSTRACT |
We have identified and characterized a potent new nonnucleoside
reverse transcriptase (RT) inhibitor (NNRTI) of human immunodeficiency virus type 1 (HIV-1) that also is active against HIV-2 and which interferes with virus replication by two distinct mechanisms. 1-(3-Cyclopenten-1-yl)methyl-6-(3,5-dimethylbenzoyl)-5-ethyl-2,4-pyrimidinedione (SJ-3366) inhibits HIV-1 replication at concentrations of approximately 1 nM, with a therapeutic index of greater than 4 × 106. The efficacy and toxicity of SJ-3366 are consistent
when evaluated with established or fresh human cells, and the compound
is equipotent against all strains of HIV-1 evaluated, including
syncytium-inducing, non-syncytium-inducing, monocyte/macrophage-tropic,
and subtype virus strains. Distinct from other members of the
pharmacologic class of NNRTIs, SJ-3366 inhibited laboratory and
clinical strains of HIV-2 at a concentration of approximately 150 nM,
yielding a therapeutic index of approximately 20,000. Like most NNRTIs, the compound was less active when challenged with HIV-1 strains possessing the Y181C, K103N, and Y188C amino acid changes in the RT and
selected for a virus with a Y181C amino acid change in the RT after
five tissue culture passages in the presence of the compound. In
combination anti-HIV assays with nucleoside and nonnucleoside RT and
protease inhibitors, additive interactions occurred with all compounds
tested with the exception of dideoxyinosine, with which a synergistic
interaction was found. Biochemically, SJ-3366 exhibited a
Ki value of 3.2 nM, with a mixed mechanism of
inhibition against HIV-1 RT, but it did not inhibit HIV-2 RT. SJ-3366
also inhibited the entry of both HIV-1 and HIV-2 into target cells. On
the basis of its therapeutic index and multiple mechanisms of anti-HIV
action, SJ-3366 represents an exciting new compound for use in
HIV-infected individuals.
 |
INTRODUCTION |
The structurally diverse class of
nonnucleoside reverse transcriptase (RT) inhibitors (NNRTIs) includes
compounds which are among the most potent anti-human immunodeficiency
virus (anti-HIV) agents identified (for reviews, see references
18 to 20). The therapeutic utility of these anti-HIV
compounds, however, is severely compromised by the rapid appearance of
drug-resistant virus isolates in patients (33) and
dose-limiting toxic effects, such as macropapular rashes
(26). Similarly, the growth of HIV in cell culture in the
presence of the NNRTIs yields rapid selection of drug-resistant viruses
(33). The high degree of specificity of the interaction of
these compounds at the hydrophobic nonnucleoside binding site on the
HIV type 1 (HIV-1) RT results in the ability of single amino acid
changes in the NNRTI binding pocket to reduce or eliminate the
inhibitory activity of the compound (14, 15, 24, 38).
Amino acid changes in the RT which affect the efficacies of the NNRTIs
include A98G, L100I, K101E, K103N, V106A, V108I, E138K, T139I, Y181C,
Y188C, G190A, F227L, and P236L (33).
The effective use of NNRTIs in patients is dependent on defining
appropriate combinations of agents which will prevent or retard the
selection of drug-resistant viruses or which will result in the
selection of drug-resistant virus isolates in which mutation of
critical amino acid residues renders the RT less fit to support virus
reproduction (22, 23, 30, 35). NNRTIs may also be useful
as part of a combination anti-HIV strategy with a highly potent NNRTI
and additional anti-HIV-1 agents in therapy-naive patients. The
potential for the therapeutic use of the NNRTIs in patients has
recently been reviewed (19, 20). Clinical results reported
for nevirapine as a component of a three-drug regimen in patients has
highlighted the possible benefits from the development of additional
novel or more potent NNRTIs (13). Although the use of
NNRTIs alone is not warranted, other possible strategies include the
use of these compounds as topical microbicides to prevent the sexual
transmission of HIV, for postexposure prophylaxis, or as a first-line
therapeutic option for the treatment of patients without eliminating
future therapy options. Recently, a new and potentially exciting role
for the class of NNRTIs has been defined: the reported therapeutic
potential of nevirapine to prevent the neonatal transmission of HIV
(25).
A variety of structurally distinct NNRTIs have been identified
(4, 5, 20, 21), and medicinal chemistry efforts have continued in an effort to identify the structural features of the
NNRTIs responsible for anti-HIV activity in order to select for a new
generation of compounds with improved pharmacologic and antiviral
properties. Our investigations with the NNRTIs have also focused on
means of retarding or inhibiting the selection of drug-resistant
viruses by defining the sensitivities of resistant virus and purified
RT to the compounds and selecting potentially effective NNRTI
combinations (7, 9, 10, 16, 28, 29, 32, 41). The
1-[(2-hydroxyethoxy)methyl]-6-(phenylthio)thymine (HEPT)-type NNRTIs
were among the first NNRTIs to be discovered and evaluated (1-3,
9, 17, 27, 31, 34, 39). SJ-3366 was identified through synthetic
efforts based on modification of the N-1 homocyclic moiety of the HEPT
analogs and has resulted in a series of compounds with therapeutic
indices that reach 106 (H. S. Kwon, S. H. Lee,
J. W. Lee, D. W. Kang, S. G. Chung, E. H. Cho,
J. A. Turpin, T. L. Stup, and R. W. Buckheit, Jr.,
unpublished data). Distinct from all of the other reported NNRTIs, the
SJ compounds have significant activity against HIV-2, with therapeutic indices in the range of 10,000 to 50,000. Data presented herein indicate that SJ-3366 interferes with viral replication by multiple mechanisms, and its significant potency alone and in combination with
other active anti-HIV agents, especially against drug-resistant virus
strains, suggests that this compound may have significant therapeutic
potential in HIV-infected patients.
 |
MATERIALS AND METHODS |
Cells and viruses.
The established human cells,
laboratory-derived virus isolates (including drug-resistant virus
isolates), and low-passage clinical virus isolates used in these
evaluations have previously been described in detail (10,
12). These cells were maintained in RPMI 1640 medium
supplemented with 10% fetal bovine serum, 2 mM glutamine, penicillin
(100 U/ml), and streptomycin (100 µg/ml). Fresh human cells were
obtained from the American Red Cross (Baltimore, Md.). The low-passage
clinical strains of HIV-2 were obtained from the AIDS Research and
Reference Reagent Program, National Institute of Allergy and Infectious Diseases.
Materials.
1-(3-Cyclopenten-1-yl)methyl-6-(3,5-dimethylbenzoyl)-5-ethyl-2,4-pyrimidinedione
(SJ-3366) was synthesized as described previously (Kwon et al.,
unpublished data), and the structure of the compound is provided in
Fig. 1. Crystalline stock materials were
stored at
70°C and solubilized in 100% dimethyl sulfoxide. All
stocks were diluted at least 400-fold prior to performance of drug
susceptibility assays. The compounds used in combination assays
included zidovudine (AZT), dideoxyinosine (ddI), lamivudine (3TC),
nevirapine, ritonavir, indinavir, and nelfinavir. Enzyme-linked
immunosorbent assay (ELISA) plates were purchased from Coulter
Immunotech (Hialeah, Fla.). Materials required for the performance of
RT inhibition assays and anti-HIV assays and for the growth and
maintenance of established and fresh human cells have been described
previously (6, 10).
Antiviral and cross-resistance assays.
The HIV inhibitory
activities of the compounds were evaluated as described previously
(10) by microtiter anti-HIV assays with CEM-SS cells or
fresh human peripheral blood mononuclear cells (PBMCs), which quantify
the ability of a compound to inhibit HIV-induced cell killing or HIV
replication. Quantification was performed with the tetrazolium dye
2,3-bis(2-methoxy-4-nitro-5-sulfophenyl)-2M-tetrazolium-5-carboxanilide (XTT), which is metabolized to a colored formazan product by viable cells, RT, and/or p24 ELISA. Antiviral and toxicity data are reported as the quantity of drug required to inhibit 50% of virus-induced cell
killing or virus production (IC50) and the quantity of drug required to reduce cell viability by 50% (TC50).
Combination anti-HIV assays.
Analysis of drug combinations
was performed with CEM-SS cells acutely infected with the IIIB strain
of HIV-1 as described previously (10) by the anti-HIV
assay methodology described above. Statistical evaluations were
performed with MacSynergy II software (37). The results of
the drug combination assays are presented three dimensionally for each
combination concentration, yielding a surface of activity that extends
above (synergy) or below (antagonism) the plane of additive
interaction. The volume of the surface is calculated and expressed as a
synergy volume (micromolar squared percent) calculated at the 95%
confidence interval (37). For these studies, synergy is
defined as drug combinations that yield synergy volumes greater than 50 µM2%. Slightly synergistic and highly synergistic
anti-HIV activity have been defined as yielding synergy volumes of 50 to 100 and >100 µM2%, respectively. Synergy volumes
between 0 and 50 µM2% are considered additive, and
synergy volumes less than 0 µM2% are considered antagonistic.
Selection of drug-resistant strains.
Resistant virus
isolates were selected in cell culture by serial passage of the IIIB
strain of HIV-1 in CEM-SS cells in the presence of increasing
concentrations of antiviral compound. The initial selection was
performed with a drug concentration of two times the IC50
of the compound as determined by the microtiter anti-HIV assay. With
successive passages the drug concentration was increased twofold to
enhance the selective pressure on the virus. Upon selection of a
drug-resistant virus isolate, cross-resistance testing was performed by
the methods described for the performance of antiviral assays.
Resistance has been defined in this study as a greater than fivefold
increase in the IC50 compared to the activity of the
compound against the wild-type (IIIB) isolate.
Analysis of RT mutations.
Resistance-engendering mutations
were identified by the direct sequencing of PCR products amplified from
the RT region of proviral DNA obtained from acutely infected CEM-SS
cells. A PCR-amplified product was prepared from the first 750 bp of
the RT gene with the A'-NE1' primer set. Single-stranded, biotinylated
DNA was purified from this product with avidin-conjugated
supraparamagnetic beads (Dynabeads; M280; Dynal). Direct sequencing by
dideoxynucleotide chain termination was performed with each of the
appropriate G, A, C, and T dideoxy sequencing mixes by using the
Sequenase T7 polymerase kit (U.S. Biochemicals) with 7-deaza-dGTP to
resolve compression artifacts,
-33P, and five sets of
overlapping primers obtained with a primer analysis software package
(Oligo 4.04; National Bioscience, Inc.). Evaluation of the resulting
sequencing gels was accomplished with Millipore's automated gel
scanning system. RT sequences from drug-resistant isolates were aligned
with the parental wild-type HIV-1 strain IIIB and strain HXB2 RTs by
using Millipore/Bioimage software run on a Sun Microsystem's Sparc 10 Station microcomputer.
RT inhibition assays.
Analysis of the drug sensitivity of RT
containing defined amino acid substitutions was performed as described
previously (6). Evaluation of the activities of compounds
by using homopolymer and heteropolymer templates was performed as
described previously (8). For the
Ki studies, HIV-1 RT activity was measured in 50-µl reaction mixtures containing 50 mM Tris (pH 8.0), 50 mM KCl, 10 mM MgCl2, 4 mM
-mercaptoethanol, 3% glycerol, 1 mg of bovine serum albumin per ml, 6.6 µg of primed 16S rRNA from
Escherichia coli per ml, 10 µM dATP, 10 µM dCTP, 10 µM
dGTP, and various concentrations of [3H]dTTP
(36). Purified recombinant HIV-1BH10 RT was
used for these experiments (40). The
Km for dTTP was 1.67 µM, and that for the rRNA
template was 0.66 µg/ml.
Binding and fusion inhibition assays.
HeLa-CD4-LTR-
-galactosidase cells, which use a Tat
protein-induced transactivation of the
-galactosidase gene driven by the HIV-1 long terminal repeat (LTR) promoter, were used to quantify both the binding of infectious virus to cells and cell-cell fusion events. Both of these assays have been described previously
(11). Infected cells form syncytia that can be easily
counted microscopically after incubation with
5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside (X-Gal).
The HIV binding inhibition assay involved plating of 104
HeLa-CD4-LTR-
-galactosidase cells in a 200-µl volume in
flat-bottom, 96-well microtiter plates. The cells were incubated
overnight, and the medium was removed and replaced with 100 µl of
various concentrations of SJ-3366 or control compound. One hour later 100 µl of virus-containing medium was added to each well. Cells were
incubated for an additional hour, and the monolayer was washed extensively to remove unbound virus and extracellular compound. At
48 h, the cells were fixed and stained with X-Gal. Blue
multinuclear cells were then counted under an inverted microscope. The
cell-cell fusion inhibition assay was also performed in flat-bottom,
96-well microtiter plates. HeLa-CD4-LTR-
-galactosidase cells
(5 × 103) were added to each well, and the cells were
incubated with test compound for 1 h prior to the addition of
5 × 103 HL2/3 cells. The cells were incubated for an
additional 48 h and fixed and stained with X-Gal. Blue syncytia
were counted microscopically. Staining of the cells was performed by
fixing the cells with a solution of 1% formaldehyde-0.2%
glutaraldehyde and staining the fixed cells with 4 µM potassium
ferrocyanide, 4 µM potassium ferricyanide, 2 µM MgCl2,
and 0.4% X-Gal in phosphate-buffered saline. Transactivation of
-galactosidase expression was also monitored by ELISA (5 Prime-3 Prime, Boulder, Colo.). Cell extracts were prepared by freezing-thawing and assayed for
-galactosidase activity according to the
manufacturer's recommendations. The results of the ELISA were
quantified spectrophotometrically at 405 nm with a Molecular Devices
Vmax microtiter plate reader.
 |
RESULTS |
Efficacy and toxicity of SJ-3366 against HIV-1.
The activity
of SJ-3366 was evaluated in established and fresh human cells infected
with both laboratory-derived and clinical strains of HIV-1, HIV-2, and
simian immunodeficiency virus (SIV). Nevirapine (an NNRTI) and AZT (a
nucleoside RT inhibitor [NRTI]) were used as positive anti-HIV
control compounds and were evaluated in parallel. These data are
summarized in Table 1. SJ-3366 was determined to be highly active against HIV-1 in the T cells CEM-SS, H9,
and MT2, the B-cell line AA5, the monocytic line U937, and the
T-cell-B-cell hybrid line 174×CEM. The activities (IC50s) of the compounds against HIV-1 ranged from 0.0009 to 0.01 µM. SJ-3366
was nontoxic to all cells at concentrations up to 1,135 µM, at which
point compound precipitation in cell culture eliminated the ability to
measure toxicity. Under highly optimized assay conditions in CEM-SS
cells infected with the IIIB strain of HIV-1, the efficacy and toxicity
values obtained for SJ-3366 yield a therapeutic index of approximately
4 × 106. SJ-3366 initially precipitated in the test
wells at approximately 125 to 250 µM, but cell viability was not
affected until the higher test doses (1,135 µM). AZT and nevirapine
exhibited the expected levels of activity in each of the cell lines.
SJ-3366 was also evaluated in fresh human peripheral blood leukocytes
and monocytes/macrophages infected with a variety of
low-passage
clinical virus isolates (Table
2). The
compound was
determined to be equally active against clinical virus
strains,
including viruses representative of the various HIV-1 subtypes
(subtypes A through F) found worldwide, syncytium-inducing and
non-syncytium-inducing viruses, and T-tropic and
monocyte/macrophage-tropic
viruses. The activity of SJ-3366 ranged
from 0.0002 to 0.003 µM
in fresh human PBMCs and was approximately
0.003 µM in fresh monocytes/macrophages
infected with clinical
strains of HIV-1. The toxicity of SJ-3366
in fresh human cells was also
determined to be similar to that
observed in the established cell lines
(>1,000 µM). The average
therapeutic index determined for SJ-3366 in
the fresh human cell
assays was approximately 10
6.
The effect of serum proteins was evaluated by adding human serum
albumin (HSA), human type AB serum, bovine serum albumin,
and/or
alpha-acidic glycoprotein (AAGP) to our standard anti-HIV
assays. As
can be seen in Table
3, the addition of
these proteins
had little effect on the potency of SJ-3366 against
HIV-1. A 10-fold
loss of efficacy was observed in cultures which
contained HSA
and AAGP.
Efficacy and toxicity of SJ-3366 against HIV-2 and SIV.
In
addition to its wide therapeutic index against HIV-1 strains, SJ-3366
also was determined to be active in cell-based assays against the ROD
strain of HIV-2 (Table 1). Although the activity against HIV-2 was
approximately 200-fold less than that observed against HIV-1, SJ-3366
still exhibited a therapeutic index of >20,000 against HIV-2
(IC50, 0.17 µM; TC50, >1,135 µM).
Additional assays were performed with low-passage clinical strains of
HIV-2 (Table 2), yielding IC50s that ranged from 0.003 to
0.5 µM. The specific activity of SJ-3366 against HIV-2 is one of the
features that distinguishes this compound from the remaining members of the NNRTI class of compounds. Similar to the results obtained against
HIV-1, the addition of serum proteins had little effect on the activity
of SJ-3366 against HIV-2 (Table 3). The addition of HSA and AAGP to in
vitro assays resulted in a fivefold loss of activity of SJ-3366 against
HIV-2 in CEM-SS cell culture. SJ-3366 was not active against SIV at
concentrations up to 100 µM (Table 1).
Mechanism of antiviral activity.
Mechanistic assays with
SJ-3366 indicated that the compound inhibited HIV-1 RT when evaluated
in a biochemical RT inhibition assay with either a homopolymeric
poly(rC)-oligo(dG) or a heteropolymeric rRNA template-primer assay
system. SJ-3366 exhibited Ki values of 2.7 and
3.8 nM in replicate assays with a mixed mechanism of RT inhibition
(both the Km and the Vmax
values were affected by the compound). In these assays, SJ-3366
specifically inhibited HIV-1 RT but was inactive against HIV-2 RT.
These inhibitory values were similar to the effective concentration of
SJ-3366 in cell culture against HIV-1. In addition to its ability to
inhibit RT, SJ-3366 inhibited virus attachment in assays with
HeLa-LTR-
-galactosidase cells when assayed with either HIV-1 or
HIV-2 (Fig. 2). The effective concentrations for inhibition of virus attachment (IC50s,
100 to 200 nM) were similar to the inhibitory concentrations obtained for cell-based assays with HIV-2. SJ-3366 did not inhibit the enzymatic
activity of HIV-1 integrase, protease, or RNase H (data not shown) and
also did not inhibit cell-cell fusion at concentrations up to 100 µM
(Fig. 2). On the basis of its inability to suppress virus production in
chronically infected cells, SJ-3366 did not inhibit late-stage virus
reproduction events (data not shown). Limited pretreatment assays, in
which SJ-3366 was removed by extensive washing following an overnight
culture with target cells, demonstrated that the compound had to be
continuously present in order to be effective.

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FIG. 2.
Inhibition of virus attachment and cell-cell fusion
quantified as described in Materials and Methods. , fusion; ,
toxicity; , attachment.
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|
Interaction of SJ-3366 combined with other anti-HIV agents.
Anti-HIV assays were performed with SJ-3366 combined with a variety of
anti-HIV agents including the NRTIs AZT, ddI, and 3TC, the NNRTI
nevirapine, and the protease inhibitors ritonavir, indinavir, and
nelfinavir. A summary of the combination anti-HIV data obtained from
the MacSynergy II evaluations is presented in Table
4. Data obtained from the MacSynergy II
evaluations are presented in synergy volume units (micromolar squared
percent) at the 95% confidence interval, as described in Materials and
Methods. Unlike the majority of the NNRTIs that we have evaluated,
SJ-3366 primarily exhibited additive interactions with other active
anti-HIV agents. Most particularly, little synergy was observed when
SJ-3366 was tested in combination with other NRTIs and NNRTIs. Synergy
was observed with the combination of SJ-3366 with the nucleoside analog
ddI (mean synergy volume, 129 µM2%) but not with any of
the other RT inhibitors tested. Similarly, additive interactions were
also observed with three protease inhibitors, although slightly
synergistic inhibition of HIV-1 was apparently achieved with SJ-3366
and nelfinavir (mean synergy volume, 63.5 µM2%).
Antagonistic anti-HIV interactions or synergistic toxicity was not
observed with any of the drug combinations evaluated.
Sensitivities of NNRTI-resistant viruses to SJ-3366.
SJ-3366
and the positive control compounds nevirapine and AZT were evaluated
for their activities against viruses which had been selected in cell
culture for resistance to a variety of NNRTIs (Table
5). In this study, viruses with amino
acid changes L100I, T139I, and M184V remained completely sensitive to
SJ-3366. Slight reductions in efficacy were observed when SJ-3366 was
tested against viruses with amino acid changes K101E (18-fold) or V108I
(18-fold). Greater levels of resistance were observed when SJ-3366 was
tested against viruses with the amino acid changes A98G plus V108I
(70-fold), P236L (33-fold), Y188H (55-fold), K103N (>50-fold), and
Y181C (10- to 375-fold). The various results obtained with several
strains of virus that possess the Y181C amino acid change in the RT
suggests that other phenotypic or genotypic properties of the resistant virus may play a role in the overall level of resistance achieved. In
addition, the sensitivities of these viruses to SJ-3366 are distinct
from the sensitivity patterns observed with nevirapine. These data also
suggest that resistance to SJ-3366 results in only minor changes (10- to 400-fold) in therapeutic indices relative to the therapeutic index
of the compound against wild-type virus (>4 × 106).
Confirmation of the results of these assays was obtained by evaluating
the activity of each compound against viruses or purified
RT with
single amino acid changes introduced by site-directed
mutagenesis
(Table
6). In these assays, only the
effect of the
specific amino acid change in the RT is evaluated since
these
changes are placed into a common genetic background (isolate
NL4-3).
In these assays, SJ-3366 remained completely active against
viruses
or RTs with amino acid changes L74V, A98G, L100I, V106I, V108I,
T139I, and V179D. Viruses with amino acid changes at position
Y181 were
determined to be slightly resistant, while changes at
K101E, K103N, and
Y188C resulted in significant levels of resistance
to SJ-3366. In
addition, viruses with amino acid changes that
confer resistance to AZT
and ddI exhibited enhanced sensitivity
to SJ-3366. Virus with the L74V
amino acid change was 10-fold
more sensitive, while virus with the four
AZT resistance-engendering
amino acid changes (D67N, K70R, T215Y, and
K219Q) was approximately
3-fold more sensitive. The addition of the
NNRTI-specific amino
acid changes L100I or Y181C to this background of
four amino acid
changes that engender resistance to AZT resulted in
further enhancement
of SJ-3366 activity so that it was 10- to 20-fold
more sensitive
than wild-type virus (isolate NL4-3). Once again, these
results
demonstrate significant differences in efficacy profiles
between
SJ-3366 and nevirapine.
Evaluation of the activity of SJ-3366 against purified RT with
mutations introduced by site-directed mutagenesis yielded results
similar to those obtained with the mutagenized viruses (data not
shown). Again, the fold resistance values obtained in these assays
yield small changes in the therapeutic index for SJ-3366. As expected
from the mechanistic assays, SJ-3366 was inactive at concentrations
up
to 100 µM against purified HIV-2
RT.
Selection and characterization of drug-resistant virus
isolates.
Viruses resistant to SJ-3366 were selected in CEM-SS
cells infected with the IIIB strain of virus after a short time of
culture in the presence of increasing concentrations of each compound. SJ-3366 initially yielded a virus isolate with the Y181C amino acid
change in the RT. This virus was approximately 100-fold resistant to
SJ-3366. Replicate selections were performed to address the reproducibility of the resistance selection process. In each of 10 selection assays, the Y181C amino acid change appeared in the RT by
passage 4 to 5.
 |
DISCUSSION |
A medicinal chemistry program centered upon the modification of
the N-1 homocyclic moiety of the HEPT analogs resulted in the synthesis
of a variety of highly potent anti-HIV compounds (Kwon et al.,
unpublished data). One analog, SJ-3366, was found to be a unique and
highly potent NNRTI of HIV-1. SJ-3366 was active at subnanomolar to low
nanomolar concentrations against all clinical and laboratory-derived
strains of HIV-1, remained active when challenged at a high
multiplicity of infection, and lacked inhibitory activity against SIV.
Unlike the many NNRTIs reported to date, SJ-3366 also exhibited
significant activity against HIV-2. Although SJ-3366 was 200-fold less
active against HIV-2 compared with its activity against HIV-1, SJ-3366
possessed a therapeutic index of 20,000 when it was evaluated against
HIV-2. The presence of serum proteins had no appreciable effect on the
anti-HIV-1 or anti-HIV-2 activity of SJ-3366. At most, a 10-fold loss
of activity was detected in assays with the addition of AAGP and HSA,
which have been reported to have the most relevance to human drug treatment.
SJ-3366 inhibited HIV-1 RT in biochemical inhibition assays with
purified RT with a Ki value of approximately 3 nM. Kinetic evaluations indicated that the mode of action of SJ-3366
against purified HIV-1 RT was of a complicated mixed mode of inhibition in which SJ-3366 affected both the Km and the
Vmax of the reaction. SJ-3366 did not inhibit
purified HIV-2 RT. Biochemical and cell-based mechanistic assays for
determination of how SJ-3366 inhibited HIV-2 demonstrated that SJ-3366
effectively inhibited the attachment of both HIV-1 and HIV-2 to target
cells but that it had no inhibitory activity against other viral
enzymes such as protease, integrase, or RNase H. SJ-3366 inhibited the
attachment of both HIV-1 and HIV-2 at IC50s identical to
those observed in cell-based antiviral assays with HIV-2, yielding a
therapeutic index of approximately 20,000, consistent with a specific
antiattachment mechanism of action. SJ-3366 was inactive in assays that
measured its ability to inhibit the fusion of infected and uninfected
cells. Thus, SJ-3366 has two primary mechanisms of action. Inhibition
of RT is effective for HIV-1, while inhibition of attachment occurs for
both HIV-1 and HIV-2.
Unlike most of the NNRTIs that we have evaluated, when evaluated in
anti-HIV assays with combinations of drugs, SJ-3366 and a variety of
other anti-HIV agents primarily yielded additive interactions. In our
hands, most NNRTIs yield significantly synergistic interactions with
other RT inhibitors. The results with SJ-3366 are much more reminiscent
of our experience with surface-active compounds that inhibit virus
attachment or fusion (Julie L. Russel, and Robert W. Buckheit, Jr.,
unpublished observations). Synergistic inhibition of HIV-1 was achieved
with the combination of SJ-3366 and the NRTI ddI, but all other assays
with combinations of NRTIs, and NNRTIs, and protease inhibitors yielded
additive antiviral interactions. Slightly synergistic interactions
between SJ-3366 and nelfinavir were also detected. These results also
suggest that the compound has antiviral properties that give it
activity similar to the activities of surface-active agents
in these assays. SJ-3366 exhibited properties similar to those observed
with typical NNRTIs when it was evaluated against resistant strains of
virus. Many of the amino acid changes in the RT that confer resistance to NNRTIs yield reductions in the antiviral activity of SJ-3366. Amino
acid changes at positions K103, K101, and Y188 have the greatest
detrimental effect on the activity of the compound. Unlike results
normally achieved with a variety of NNRTIs, a significant discordance
exists between data obtained with biological strains of resistant virus
selected in cell culture and data obtained with viruses constructed by
site-directed mutagenesis. Whereas high levels of resistance were
detected when the activity of SJ-3366 was evaluated against biological
strains selected in vitro, only three amino acid changes affected the
inhibitory activity of SJ-3366 when it was tested against viruses with
single amino acid changes introduced by site-directed mutagenesis.
Furthermore, much lower quantitative levels of resistance were observed
with these NL4-3-derived resistant strains. A more typical pattern of
resistance was observed for the positive control NNRTI compound
nevirapine, and the biologically derived and site-directed
mutagenesis-derived mutant virus isolates had similar levels of
resistance to nevirapine. The discordance in the results for these
groups of viruses may result from an enhanced sensitivity of NL4-3 to
the attachment inhibition mechanism of action of SJ-3366 or may be due
to variations in the ability of the selected viruses to be inhibited at
the step of virus entry. Certainly, the process of selection of
drug-resistant viruses in cell culture may result in changes in viral
fitness, cytopathogenicity, and replication rate which may render them
more resistant to an attachment inhibitor by the accumulation of non-RT
amino acid changes. The differences in fold resistance between the two
panels of viruses are most notable with the various viruses
possessing the Y181C amino acid change in the RT. With these
Y181C-containing viruses, fold resistance values of 5-fold
(site-directed mutagenesis-derived mutant), 10-fold (UC38
resistant), >50-fold (diphenylsulfone resistant), and 375-fold (E-BPTU
[1-benzyloxymethyl-5-ethyl-6-(
-pyridylthis)uracil] resistant) were observed. Interestingly, the most resistant virus in the group was selected with the compound E-BPTU, which is a related
HEPT-type compound (9). Sensitivity testing also suggests that SJ-3366 is slightly more active against viruses that are resistant
to the NRTIs (AZT and ddI), including NRTI-resistant viruses with added
NNRTI-specific mutations. These results would suggest that the changes
in RT caused by resistance-engendering mutations result in an enzyme
that is more sensitive to SJ-3366-mediated inhibition.
Resistance selection assays performed with SJ-3366 routinely yield a
virus that possesses the Y181C amino acid change in the RT after
approximately five to six passages in cell culture. Interestingly, the
fold resistance values calculated suggest increasing levels of
resistance of the serially passaged virus prior to the appearance of
this initial change in the RT and fold resistance increases to nearly
100-fold prior to changes in RT. These data might suggest that the
initial resistance selection process for SJ-3366 involves the ability
of the virus to evade the attachment mechanism of inhibition. Most of
our data with the panels of resistant strains of virus would also
suggest that fold resistance values of 100- to 1,000-fold would not
occur with only the Y181C amino acid change. Thus, we believe it is
likely that amino acid changes in other HIV proteins, such as gp120 and
gp41, will be found to explain the increase in fold resistance up until
the first passage at which the Y181C change is detected. Interestingly,
of the three amino acid changes that would be predicted to yield
high-level resistance to SJ-3366, K101E, K103N, and Y188C do not appear
during long-term passage of virus in the presence of SJ-3366. These
data likely suggest that these amino acid changes cause replication disadvantages to the virus and, therefore, that the virus selects other
pathways to achieve resistance and the ability to grow in the presence
of high concentrations of the compound.
The HEPT compounds, of which SJ-3366 is a member, were among the first
NNRTIs reported, and one member of this class (MKC-442) has progressed
into human clinical trials. These compounds are among the most active
inhibitors of HIV-1. None of the reported HEPT-type compounds, however,
have demonstrated significant activity against HIV-2, suggesting that
the specific modifications made at the N-1 homocyclic moiety of HEPT
have resulted in this expanded range of activity. Structure-activity
relationships among 80 analogs of SJ-3366 for efficacy in cytopathic
effect assays for HIV-1 and HIV-2, as well as inhibition of RT and
virus attachment, have been performed and are being reported elsewhere
(R. W. Buckheit, Jr., unpublished data).
SJ-3366 represents a highly potent and unique member of the class of
NNRTIs. In addition to joining thiocarboxanilide, the quinoxaline
HBY097, and efavirenz as the most active NNRTIs described in the
literature (20), SJ-3366 also possesses multiple
mechanisms of anti-HIV action, exhibits distinct differences in
activity against NNRTI-resistant strains compared to those of typical
NNRTIs, remains active in the presence of high concentrations of
protein, and exhibits positive interactions with NRTI, NNRTI, and
protease inhibitor compounds. All of these antiviral features suggest
that the compound may represent a potential clinical candidate for anti-HIV therapy.
 |
ACKNOWLEDGMENTS |
We gratefully acknowledge Barbara Toyer and Michelle Wenzel for
drug preparation support and Diana Markle for assistance with the
preparation of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Infectious
Disease Research Department, Southern Research Institute, 431 Aviation
Way, Frederick, MD 21701. Phone: (301) 694-3232, ext. 127. Fax: (301) 694-7223. E-mail: buckheit{at}sri.org.
 |
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Antimicrobial Agents and Chemotherapy, February 2001, p. 393-400, Vol. 45, No. 2
0066-4804/01/$04.00+0 DOI: 10.1128/AAC.45.2.393-400.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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