Previous Article | Next Article ![]()
Antimicrobial Agents and Chemotherapy, September 2001, p. 2517-2523, Vol. 45, No. 9
Structural Biology Department, Hauptman
Woodward Medical Research Institute, Buffalo, New York
14203,1 and Department of
Pharmacology and Toxicology, Indiana University School of Medicine,
Indianapolis, Indiana 462022
Received 11 December 2000/Returned for modification 5 March
2001/Accepted 18 June 2001
While assays of many antifolate inhibitors for dihydrofolate
reductase (DHFR) have been performed using rat DHFR as a target, neither the sequence nor the structure of rat DHFR is known. Here, we
report the isolation of the rat DHFR gene through screening of a rat
liver cDNA library. The rat liver DHFR gene has an open reading frame
of 561 bp encoding a protein of 187 amino acids. Comparisons of the rat
enzyme with those from other species indicate a high level of
conservation at the primary sequence level and more so for the amino
acid residues comprising the active site of the enzyme. Expression of
the rat DHFR gene in bacteria produced a recombinant protein with high
enzymatic activity. The recombinant protein also paralleled the human
enzyme with respect to the inhibition by most of the antifolates tested
with PT652 and PT653 showing a reversal in their patterns. Our results
indicated that rat DHFR can be used as a model to study antifolate
compounds as potential drug candidates. However, variations between rat
and human DHFR enzymes, coupled with unique features in the inhibitors,
could lead to the observed differences in enzyme sensitivity and selectivity.
Dihydrofolate reductase (DHFR)
catalyzes the NADPH-dependent reduction of dihydrofolate to
tetrahydrofolate, which serves as a substrate for a number of
one-carbon transfer reactions in purine and pyrimidine synthesis,
including that of thymidylate. DHFR, along with other enzymes in the
folate metabolic pathway, is critical for the biosynthesis of DNA, RNA,
and certain amino acids (2-4, 51). Consequently,
inhibition of DHFR enzymatic activity depletes the tetrahydrofolate
pool inside the cell and inhibits DNA synthesis, subsequently leading
to cell death. For this reason, DHFR has been studied extensively and
many antifolates have been synthesized and tested as potential
candidates for drugs (5, 19-24, 28, 30, 35, 44-48, 52).
More recently, antifolates have been shown effective against such
opportunistic infectious agents as Pneumocystis carinii and
Toxoplasma gondii (1, 6, 9, 10). Since
immunosuppressed patients and those with AIDS are severly affected by
these pathogens, efforts have been focused on the design of antifolates
that are selective against P. carinii DHFR (pc DHFR) and
T. gondii (or tgDHFR) (12, 18, 22-24, 27, 28, 33, 42,
44, 48). In most of these studies, antifolate selectivity
reported as a ratio of 50% inhibitory concentrations (IC50s) from two DHFR species was measured against crude
DHFR preparations from rat liver (44, 47, 48).
Evidence from sequence analysis and three-dimensional crystal
structures of DHFR from many species shows that there is a high degree
of conservation at the primary sequence and structural level among
DHFRs (8, 10-14, 17, 19, 29, 34, 36, 37, 41, 43, 50, 53,
55). However, kinetic and biochemical characterization
data reveal differences in the mechanism of action that result in
significant species specificity by selected inhibitors (15-17,
21, 25, 26, 31, 36, 39, 43). For
example, trimethoprim (TMP) [2,4-diamino-5-(3,4,5,-trimethoxybenzyl)-pyrimidine], which is used against bacterial infections, demonstrates a
significantly higher affinity for bacterial DHFR than for eukaryotic
DHFR. While a drug such as TMP also shows reasonable selectivity
against pc- and tgDHFR, it is not a particularly effective inhibitor,
as indicated by its high IC50s (2-4, 51).
Clearly, drugs with high potency as well as selectivity for effective
therapy are still in demand.
Despite the availability of crystal structures of DHFR from many
species and the extensive body of literature on the effects of
compounds against rat liver DHFR, neither the DNA sequence nor the
protein structure of the rat enzyme is known. Because of a high degree
of similarity in the N-terminal sequence of rat and human DHFR
(38, 54), it was assumed that the rat enzyme would be a
faithful representation of the human enzyme. However, only a detailed
comparison of its sequence, structure, and kinetics with the
human enzyme will provide the needed data. Therefore, we have
isolated the DHFR gene from a rat cDNA library and expressed an active
form of recombinant DHFR protein from Escherichia coli. Inhibitory data for select antifolates reveals the expected pattern of
homologies; however, one example shows significant differences in the
rat and human DHFR IC50s.
Reagents.
A rat (6-month-old Sprague
Dawley male) liver lambda cDNA library for isolation of rat liver
DHFR cDNA was purchased from Stratagene (Cedar Creek, Tex.). Gateway
plasmids pDEST-15 and pDONR201 for the construction of expression
clones as well as the required clonase enzymes were obtained from Life
Technology (Bethesda, Md.). The pCRII vector and the TA cloning kit for
the cloning of PCR products were from Invitrogen (Carlsbad, Calif.). Different E. coli strains were used for DNA manipulations
and for protein expression: DH5 Library screening.
A mouse DHFR cDNA fragment was initially
generated from mouse liver total mRNA through reverse
transcription-PCR. First-strand cDNA was synthesized with a reverse
primer complementary to a 3'-untranslated region (UTR) of mouse DHFR:
5'-CGG GAT CCC CTC TCT AAA GAA AGA ATA ACT CAT AGA TCT AAA GCC-3'.
It was subsequently amplified with a PCR primer pair, 5'-CGG
GAT CCA TGG TTC GAC CGC TGA ACT GCA TCG-3' and 5'-CGG GAT
CCA AGT CCC ATG GTC TTG TAA AAA TGC-3'. The resulting 677-bp
fragment containing the full-length mouse DHFR open reading frame (ORF)
was cloned into a pCRII vector (Invitrogen) using the TA cloning
kit and sequenced to confirm the identity of the mouse DHFR sequence.
This 677-bp fragment was then used as a probe to screen a rat liver
cDNA lambda library (Stratagene) with a titer of ~1.75 × 107 PFU/µl. Approximately 1,000,000 plaques of the
library were screened using 20 150-mm-diameter NZY agar plates.
Briefly, 20 sets of 600 µl of freshly grown E. coli
XL1-Blue MRF' [ DNA sequence analysis.
Multiple positive pBlueScript clones
containing rat liver DHFR cDNA inserts were sequenced using an ABI
PRISM automated sequencer from Roswell Park Cancer Institute Biopolymer
Facility (Buffalo, N.Y.). T7 forward and M13 reverse primers on the
vector were used to sequence and confirm the isolation of the
full-length rat liver DHFR cDNA. The rat liver DHFR cDNA sequence was
compared with known DHFR sequences from different species using BLAST
web services from the National Center of Biotechnology Information
(NCBI). Protein sequence alignment with other known DHFR species was
performed using the Wisconsin Package Version 10.0 (TRANSLATE, PILEUP,
REFORMAT), Genetics Computer Group, Madison, Wis.
Heterologous expression of rat liver DHFR gene.
The Gateway
cloning kit (Life Technology) was used to construct expression vectors
for the rat liver DHFR gene. The rat DHFR gene was PCR amplified with a
pair of oligonucleotide primers harboring the attB
bacteriophage recombination sites as well as the tobacco etch virus
(TEV) protease recognition site (ENLYQG). The PCR product was
introduced into the entry vector containing the attP
bacteriophage recombination site via the attB × attP recombination reaction. The resulting entry vector now contained an
attL recombination site that could be recombined into the
destination vector with the matching attR site. The
reactions, designated BP and LR reactions, respectively, were performed
according to the manufacturer's recommended conditions (Life
Technology). The resulting expression clone, pDest15-rDHFR, would
express a glutathione S-transferase rat DHFR
(GST-rDHFR) fusion protein in bacteria and would contain a TEV protease
recognition site between the GST and rat DHFR domains. The forward
primer contains the attB1 recombination site and the TEV
protease recognition site fused in frame with the N-terminal sequences
of rat DHFR (5'-GGG GAC AAG TTT GTA CAA AAA AGC AGG CTT AGA AAA
TCT GTA CTT CCA GGG GAT GGT TCG TCC GCT GAA CTG CAT CGT CGC C-3').
The reverse primer contained the attB2 recombination
site fused with a complementary region of the 3'-UTR of the rat DHFR
(5'-GGG GAC CAC TTT GTA CAA GAA AGC TGG GTG GAT CCA GCA GAA GTG
GTC TTA TAA AAT GC-3').
0066-4804/01/$04.00+0 DOI: 10.1128/AAC.45.9.2517-2523.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Isolation of Rat Dihydrofolate Reductase Gene and
Characterization of Recombinant Enzyme
![]()
ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results and Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results and Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results and Discussion
References
[supE44
lacU169 (
80 lacZ
M15)
hsdR71 recA1 endA1 gyrA96 thi-1 relA1] and DB3.1
[F
gyrA462 endA
(Sr1-recA) mcrB mrr
hsdS20(rB
mB
) supE44 ara-14 galK2 lacY1
proA2 rpsL20(Smr) xyl5 
leu mtl1] were from Life Technology, and BL21(
DE3)
[hsdS gal (
cIts857 ind1 S am7
nin5 lacUV5-T7 gene 1] were from Novagen (Madison, Wis.). Restriction endonucleases and T4 DNA ligase were from New England Biolabs (Beverly, Mass.), Taq DNA
polymerase was from Sigma (St. Louis, Mo.) and Life Technology, and
pCRII vector was from Stratagene. Radioactive isotope
[
-32P]dATP used for Southern hybridization was
obtained from Pharmacia-Amersham (Piscataway, N.J.). The Random Priming
DNA Synthesis kit for making radioactive DNA probes was purchased from
Stratagene. Nylon dot blot membranes were obtained from Osmonics
(Minnetonka, Mont.). Positive cDNA lambda clones were visualized using
a PhosphorImager scanner (Pharmacia-Amersham). All other chemicals and
reagents were obtained from Sigma. All chromatography columns were from Pharmacia-Amersham, and the BIOCAD 700E Perfusion Chromatography workstation was from PE-Biosystems (Norwalk, Conn.).
(mcrA) 183
(mcrCB-hsdSMR-mrr)173 endA1 supE44 thi-1 recA1
gyrA96 relA1 lac [F' proAB lac1q
Z
M15 Tn10 (Tet)] cells at an
optical density at 600 nm (OD600) of 0.5 per plate were
each infected with
1 × 105 plaques from cDNA
library and incubated at 37°C for about 8 h. Plaque lifts were made
in duplicate immediately and lysed in situ. Phage DNA was denatured and
fixed on the membrane through baking in a vacuum oven for 2 h at
80°C. Membranes were then hybridized to a
32P-radiolabeled probe from a mouse DHFR PCR fragment to
detect cross-reacting plaques by using the random priming kit from
Stratagene (49). Positive plaques were diluted and
repeatedly hybridized in duplicate until individual homogeneous clones
could be isolated. After obtaining the positive plaque stocks, clones
were incubated with the ExAssist helper phage and then introduced into
a nonsuppressing E. coli SOLR
{e14
(McrA
)
(mcrCB-hsdSMR-mrr) 171 sbcC recB recJ uvrC
umuC::Tn5(Kanr) lac
gyrA96 relA1 thi-1 endA1
R [F' proAB
lac1q Z
M15]
Su
} strain for the excision of pBlueScript
phagemid containing the positive cDNA insert.
DE3) E. coli strain via chemical
transformation as previously described (49). Cells
containing the plasmids were grown at 30°C to an OD600 of
0.4 and were induced with 0.15 mM
isopropyl-
-D-thio-galactopyranoside (IPTG) for 4 h
at 30°C. Expression of the GST-rDHFR fusion protein was confirmed
through the sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) of the cell lysate after the IPTG induction. The typical yield of soluble GST-rDHFR fusion protein was between 35 and 40 mg per
liter of cell culture after purification.
Purification of GST-rDHFR and rat DHFR proteins. To purify the GST-rDHFR fusion protein, a GST affinity column was used. After induction with IPTG, cells were harvested, resuspended in lysis buffer (50 mM KH2PO4 [pH 7.0] 50 mM KCl, and 1 mM EDTA), and lysed with lysozyme (50 mg for 4 liters of cell culture) in the presence of protease inhibitors. To optimize lysis, cell suspension also went through a liquid nitrogen freeze-thaw cycle twice. Lysed cells were immediately centrifuged at 40,000 rpm for 45 min at 4°C (45 Ti rotor, L8 Beckman ultracentrifuge). The clear cell lysate was filtered through a 0.45-µm-pore-size membrane and applied to the GST affinity column on a BioCAD 700E perfusion chromatography workstation. Bound GST-rDHFR fusion protein was eluted with elution buffer (50 mM Tris-HCl [pH 8.0], 25 mM glutathione). The eluted fractions were then digested with TEV protease at 30°C overnight in TEV digestion buffer (50 mM Tris-HCl [pH 8.0], 1 mM EDTA, 5 mM DTT). After digestion with TEV, one glycine residue from the TEV recognition site should have been left at the N terminus of the rat DHFR protein. The digestion mixture was loaded onto a G-25 desalt column to exchange the buffer composition with that of the lysis buffer but at pH 8.0. Rat DHFR protein was separated from GST and undigested GST-rDHFR fusion by passage through a second GST affinity column. The rat DHFR protein was collected as the flowthrough fraction. A final G-75 gel filtration column removed any other potential impurities of different sizes.
Enzyme and inhibitor assay. The activities of both the recombinant rat liver DHFR and the GST-rDHFR fusion protein were measured at room temperature spectrophotometrically at 340 nm for a decrease in absorbance which occurs when NADPH and dihydrofolate are converted to NADP+ and tetrahydrofolate. The assay was performed essentially as described by Prendergast et al. (43).
The spectrophotometric assay (micromolar IC50 measurement) used to measure the abilities of compounds to decrease the rate of enzymatic reduction of dihydrofolate to tetrahydrofolate in the presence of NADPH was performed at 37°C with saturating concentrations of substrate and cofactor, and with 150 mM KCl, as previously described (6, 9, 44).GenBank nucleotide sequence accession number. The GenBank accession number for full-length rat liver DHFR cDNA is AF318150.
| |
RESULTS AND DISCUSSION |
|---|
|
|
|---|
Isolation of rat DHFR gene.
The rat liver DHFR gene was
isolated through the screening of a rat liver cDNA library by using a
mouse DHFR probe. After multiple rounds of screening, one clone was
obtained that contained a full-length ORF. The nucleotide sequence of
the gene plus portions of the 5'- and 3'-UTRs are shown in Fig.
1.
|
|
Expression and purification of recombinant rat DHFR protein.
The putative rat DHFR gene was introduced into a Gateway expression
plasmid via two steps of recombination reactions. The resulting
expression clone produces a GST fusion protein in BL21(
DE3) cells
upon induction by IPTG. The recombinant GST fusion protein, tentatively
named GST-rDHFR, was expressed as a 50.2-kDa protein with the GST and
rat DHFR moiety linked by a TEV protease recognition site. As shown in
Fig. 3, the target GST fusion protein was
separated from total cellular proteins by the affinity columns (lanes 1 and 2). A minor band with a molecular mass of approximately 29 kDa
below the dominant GST fusion band in lane 2 is a truncated translational product of the GST portion and can be removed by a second
round of GST affinity chromatography. Since no TEV protease recognition
site is present within the putative rat DHFR protein, it could be
separated from the GST portion after the digestion of TEV protease
(Fig. 3, lane 3). Digestion yielded the expected 21.6-kDa putative rat
DHFR protein and the 28.7-kDa GST protein. Subsequently, target rat
protein was purified through additional rounds of GST affinity
chromatography to remove the GST tags. After the final chromatographic
purification using a G-75 sizing column, a single band on the SDS-PAGE
gel (Fig. 3, lane 6) indicated the successful isolation of a highly
pure and homogeneous protein.
|
Inhibition of DHFR enzymatic activity with different
compounds.
Based upon similarities in N-terminal analysis of the
native rat and human proteins (38, 54), many inhibitor
binding assays of DHFR have been performed with rat liver
enzyme (44, 46). We tested the inhibition of recombinant
rat liver DHFR by several compounds and compared these results with
those obtained from the native DHFR preparations (Table
1).
|
Summary. Rat liver DHFR has been used as the in vivo model to study hundreds of antifolates and related compounds against human DHFR for their potential drug implications, despite the fact that the sequence of neither the gene nor the protein was known. To better correlate the published literature for rat liver DHFR and human DHFR, we have cloned and sequenced the DHFR gene from a rat liver cDNA library. With a GST fusion tag, we expressed and purified an active form of recombinant rat DHFR protein in large quantity in E. coli cells.
Seven inhibitors chosen to represent different categories of antifolates with various selectivity against DHFR from the fungal pathogen P. carinii were tested against the recombinant rat liver enzyme. Similar inhibition profiles against both the rat and human enzyme were observed despite the fact that the IC50s of recombinant rat DHFR were consistently lower than those of the recombinant human protein. The inhibitors also demonstrate consistent pcDHFR selectivity with both human and rat DHFR despite some variations with certain compounds. As noted, compounds with large bulky hydrophobic groups as found in PT652 and PT653 showed inconsistencies among the various assays. Conceivably, while binding of these antifolates provide a reasonable portrayal of their interactions with human DHFR, structural variations between human and rat enzyme coupled with unique features in the inhibitors could lead to differences in enzyme sensitivity and selectivity.| |
ACKNOWLEDGMENTS |
|---|
We thank Carol Yarborough for the assistance on the chromatographic work.
This work was supported in part by funds from GM51670 (V.C.), the Greater Buffalo Community Fund (V.C.), and the Wendt Foundation (J.A.B.).
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Structural Biology Department, Hauptman Woodward Medical Research Institute, 73 High St., Buffalo, NY 14203. Phone: (716) 856-9600, ext. 322. Fax: (716) 852-6086. E-mail: cody{at}hwi.buffalo.edu.
| |
RERERENCES |
|---|
|
|
|---|
| 1. |
Allegra, C. J.,
J. A. Kovacs,
J. C. Drake,
J. C. Swan,
B. A. Chabner, and H. Masur.
1987.
Activity of antifolates against Pneumocystis carinii dihydrofolate reductase and identification of a potent new agent.
J. Exp. Med.
165:926-931 |
| 2. | Bertino, J. R., A. Sobrero, E. Mini, B. A. Moroson, and A. Cashmore. 1987. Design and rationale for novel antifolates. NCI Monogr. 5:87-91. |
| 3. | Blakley, R. L. 1995. Eukaryotic dihydrofolate reductase. Adv. Enzymol. Relat. Areas Mol. Biol. 70:23-102[Medline]. |
| 4. | Blakley, R. L., and S. J. Benkovic. 1984. Folates and pteridines, vol. 1. John Wiley & Sons, New York, N.Y. |
| 5. | Blaney, J. M., C. Hansch, C. Silipo, and A. Vittoria. 1984. Structure-activity relationships of dihydrofolate reductase inhibitors. Chem. Rev. 84:333-407[CrossRef]. |
| 6. |
Broughton, M. C., and S. F. Queener.
1991.
Pneumocystis carinii dihydrofolate reductase used to screen potential antipneumocystis drugs.
Antimicrob. Agents Chemother.
35:1348-1355 |
| 7. |
Burchall, J. J., and G. H. Hitchings.
1965.
Inhibitor binding analysis of dihydrofolate reductases from various species.
Mol. Pharmacol.
1:126-136 |
| 8. | Champness, J. N., A. Achari, S. P. Ballantine, P. K. Bryant, C. J. Delves, and D. K. Stammers. 1994. The structure of Pneumocystis carinii dihydrofolate reductase to 1.9Å resolution. Structure 2:915-924[Medline]. |
| 9. |
Chio, L.-C., and S. F. Queener.
1993.
Identification of highly potent and selective inhibitors of Toxoplasma gondii dihydrofolate reductase.
Antimicrob. Agents Chemother.
37:1914-1923 |
| 10. | Cody, V., D. Chan, N. Galitsky, D. Rak, J. R. Luft, W. Pangborn, S. F. Queener, C. A. Laughton, and M. F. G. Stevens. 2000. Structural studies on bio-active compounds 30: crystal structure and molecular modeling studies of Pneumocystis carinii dihydrofolate reductase cofactor complex with TAB, a highly selective antifolate. Biochemistry 39:3556-3564[CrossRef][Medline]. |
| 11. | Cody, V., N. Galitsky, D. Rak, J. R. Luft, W. Pangborn, and S. F. Queener. 1999. Ligand-induced conformational changes in the crystal structures of Pneumocystis carinii dihydrofolate reductase complexes with folate and NADP+. Biochemistry 38:4303-4312[CrossRef][Medline]. |
| 12. | Cody, V., N. Galitsky, J. R. Luft, W. Pangborn, A. Gangjee, R. Devraj, S. F. Queener, and R. L. Blakley. 1997. Comparison of ternary complexes of Pneumocystis carinii and wild type human dihydrofolate reductase with coenzyme NADPH and a novel classical antitumor furo[2,3-d]pyrimidine antifolate. Acta Crystallogr. Sect. D D53:638-649. |
| 13. |
Cody, V.,
J. R. Luft,
E. Ciszak,
T. I. Kalman, and J. H. Freisheim.
1992.
Crystal structure determination at 2.3Å of recombinant human dihydrofolate reductase ternary complex with NADPH and methotrexate- -tetrazole.
Anticancer Drug Design
7:483-491[Medline].
|
| 14. | Damas, T., G. Auerback, G. Bader, U. Jacob, T. Ploom, R. Huber, and R. Jaenicke. 2000. The crystal structure of dihydrofolate reductase from Thermotoga maritima: molecular features of thermostability. J. Mol. Biol. 297:659-672[CrossRef][Medline]. |
| 15. | Delcamp, T. J., S. S. Susten, D. T. Blankenship, and J. H. Freisheim. 1983. Purification and characterization of dihydrofolate reductase from methotrexate-resistant human lyphoblastoid cells. Biochemistry 22:633-639[CrossRef][Medline]. |
| 16. | Delves, C. J., C. P. Ballantine, R. L. Tansik, D. P. Baccanari, and D. K. Stammers. 1993. Refolding of recombinant Pneumocystis carinii dihydrofolate reductase and characterization of the enzyme. Protein Expr. Purif. 4:16-23[CrossRef][Medline]. |
| 17. |
Edman, J. C.,
U. Edman,
M. Cao,
B. Lundgren,
J. A. Kovacs, and D. V. Santi.
1989.
Isolation and expression of the Pneumocystis carinii dihydrofolate reductase gene.
Proc. Natl. Acad. Sci. USA
86:8625-8629 |
| 18. | Fischl, M. A., G. M. Dickinson, and L. La Voie. 1988. Safety and efficacy of sulfamethoxazole and trimethoprim chemoprophylaxis for Pneumocystis carinii pneumonia in AIDS. JAMA 105:45-48. |
| 19. | Gangjee, A., J. Yu, J. J. McGuire, V. Cody, N. Galitsky, R. L. Kisliuk, and S. F. Queener. 2000. Design, synthesis, and x-ray crystal structure of a potent dual inhibitor of thymidylate synthase and dihydrofolate reductase as an antitumor agent. J. Med. Chem. 43:3837-3851[CrossRef][Medline]. |
| 20. | Gangjee, A., E. Elzein, S. F. Queener, and J. J. McGuire. 1998. Synthesis and biological activities of tricyclic conformationally restricted tetrahydropyrido annulated furo [2,3-d]pyrimidines as inhibitors of dihydrofolate reductase. J. Med. Chem. 41:1409-1416[CrossRef][Medline]. |
| 21. | Gangjee, A., A. Vasudevan, S. F. Queener, and R. L. Kisliuk. 1996. 2,4-Diamino-5-deaza-6-substituted pyrido[2,3-d]pyrimidine antifolates as potent and selective nonclassical inhibitors of dihydrofolate reductase. J. Med. Chem. 39:1438-1446[CrossRef][Medline]. |
| 22. | Gangjee, A., O. Adair, and S. F. Queener. 1999. Pneumocystis carinii and Toxoplasma gondii dihydrofolate reductase inhibitors and antitumor agents. Synthesis and biological Activities of 2,4-diamino-5-methyl-6-[(monosubstituted anilino)methyl]-pyrido[2,3-d]pyrimidines. J. Med. Chem. 42:2447-2455[CrossRef][Medline]. |
| 23. | Gangjee, A., A. Vasudevan, and S. F. Queener. 1997. Synthesis and biological evaluation of nonclassical 2,4-diamino-5-methylpyrido[2,3-d]]pyrimidines with novel side chain substitutents as potential inhibitors of dihydrofolate reductase. J. Med. Chem. 40:479-485[CrossRef][Medline]. |
| 24. | Gangjee, A., F. Mavandadi, and S. F. Queener. 1997. Effect of N9-methylation and bridge atom variation on the activity of 5-substituted 2,4-diaminopyrolo[2,3-d]pyrimidine against dihydrofolate reductase from Pneumocystis carinii and Toxoplasma gondii. J. Med. Chem. 40:1173-1177[CrossRef][Medline]. |
| 25. | Hartman, P. G. 1993. Molecular aspects and mechanism of action of dihydrofolate reductase inhibitors. J. Chemother. 5:369-376[Medline]. |
| 26. | Huang, S., J. R. Appleman, X. Tan, P. D. Thompson, R. L. Blakley, R. P. Sheridan, R. Venkataraghavan, and J. H. Freisheim. 1990. Role of lysine-54 in determining cofactor specificity and binding in human dihydrofolate reductase. Biochemistry 29:8063-8069[CrossRef][Medline]. |
| 27. |
Hughes, W. T.,
P. C. McNabb,
T. D. Makres, and S. Feldman.
1974.
Efficacy of trimethoprim and sulfamethoxazole in the prevention and treatment of Pneumocystis carinii pneumonitis.
Antimicrob. Agents Chemother.
5:289-293 |
| 28. | Jackson, R. C. 1999. Past and future perspectives, p. 1-12. In A. L. Jackman (ed.), Antifolate drugs in cancer therapy. Humana Press, Totowa, N.J. |
| 29. | Johnson, S. J., S. V. Gupta, K. J. Stevenson, and J. H. Freisheim. 1982. Purification and characterization of dihydrofolate reductase from Walker 256 carcinosarcoma. Can. J. Biochem. 60:1132-1142[Medline]. |
| 30. | Jones, M. L., D. P. Baccanari, R. L. Tansik, C. M. Boytos, S. K. Rudolph, and L. F. Kuyper. 1999. Inhibitors of dihydrofolate reductase: design, synthesis and antimicrobial activities of 2,4-diamino-6-methyl-5-ethynylpyrimidines. J. Heterocycl. Chem. 36:145-148. |
| 31. |
Kaufman, B. T.,
A. A. Kumar,
D. T. Blankenship, and J. H. Freisheim.
1980.
Activation of bovine and chicken liver dihydrofolate reductases and its relationship to a specific cysteine residue in their NH2-terminal amino acid sequences.
J. Biol. Chem.
255:6542-6545 |
| 32. | Klepser, M. E., and T. B. Klepser. 1997. Drug treatment of HIV-related opportunistic infections. Drugs 53:40-73[Medline]. |
| 33. |
Kovacs, J. A.,
C. J. Allegra,
J. C. Swan,
J. C. Drake,
J. E. Parrillo,
B. A. Chabner, and H. Masur.
1988.
Potent antipneumocystis and antioxoplasma activities of Piritrexim, a lipid soluble antifolate.
Antimicrob. Agents Chemother.
32:430-433 |
| 34. | Kraut, J., and D. A. Matthews. 1987. Dihydrofolate reductase, p. 1-71. In F. Jurnak, and A. McPherson (ed.), Biological macromolecules and assemblies, vol. III. John Wiley and Sons, New York, N.Y. |
| 35. | Kuyper, L. F., D. P. Baccanari, M. L. Jones, R. N. Hunter, R. L. Tansik, S. S. Joyner, C. M. Boytos, S. K. Rudolph, V. Knick, H. R. Wilson, J. M. Caddell, H. S. Friedman, J. C. Comley, and J. N. Stables. 1996. High-affinity inhibitors of dihydrofolate reductase: antimicrobial and anticancer activities of 7,8-dialkyl-1,3,-diaminopyrrolo[3,2-f]quinazolines with small molecular size. J. Med. Chem. 39:892-903[CrossRef][Medline]. |
| 36. |
Lewis, W. S.,
V. Cody,
N. Galitsky,
J. R. Luft,
W. Pangborn,
S. K. Chunduru,
H. T. Spencer,
J. R. Appleman, and R. L. Blakley.
1995.
Methotrexate-resistant variants of human dihydrofolate reductase with substitutions of leucine 22: kinetics, crystallography and potential as selectable markers.
J. Biol. Chem.
270:5057-5064 |
| 37. | Li, R., R. Sirawaraporn, P. Chitnumsub, W. Sirawaraporn, J. Wooden, F. Athappilly, S. Turley, and W. G. Hol. 2000. Three dimensional structure of M. tuberculosis dihydrofolate reductase reveals opportunities for the design of novel tuberculosis drugs. J. Mol. Biol. 295:307-324[CrossRef][Medline]. |
| 38. | Lovesey, A. C. 1971. Effects of methotrexate on the synthesis and properties of dihydrofolate reductase in rat liver. Biochem. Pharmacol. 20:2033-2041[CrossRef][Medline]. |
| 39. | Margosiak, S. A., J. R. Appleman, D. V. Santi, and R. L. Blakley. 1993. Dihydrofolate reductase from the pathogenic fungus Pneumocystis carinii: catalytic properties and interaction with antifolates. Arch. Biochem. Biophys. 305:499-508[CrossRef][Medline]. |
| 40. | Miller, R. F., and D. M. Mitchell. 1995. AIDS and the lung: update 1995: 1-Pneumocystis carinii pneumonia. Thorax 50:191-200[Medline]. |
| 41. | Oefner, C., A. D'Arcy, and F. K. Winkler. 1988. Crystal structure of human dihydrofolate reductase complexed with folate. Eur. J. Biochem. 174:377-385[Medline]. |
| 42. | Piper, J. R., C. A. Johnson, C. A. Krauth, R. L. Carter, C. A. Hosmer, S. F. Queener, S. E. Borotz, and E. R. Pfefferkorn. 1996. Lipophilic antifolates as agents against opportunistic infections. I. Agents superior to trimetrexate and piritrexim against Toxoplasma gondii and Pneumocystis carinii in in vitro evaluations. J. Med. Chem. 39:1271-1280[CrossRef][Medline]. |
| 43. | Prendergast, N. J., T. J. Delcamp, P. L. Smith, and J. H. Freisheim. 1988. Expression and site-directed mutagenesis of human dihydrofolate reductase. Biochemistry 27:3664-3671[CrossRef][Medline]. |
| 44. | Queener, S. F. 1995. New drug developments for opportunistic infections in immunosupprressed patients: Pneumocystis carinii. J. Med. Chem. 38:4739-4759[CrossRef][Medline]. |
| 45. | Robson, C., M. A. Meek, J.-D. Grunwaldt, P. A. Lambert, S. F. Queener, D. Schmidt, and R. J. Griffin. 1997. Nonclassical 2,4-diamino-5-aryl-6-ethylpyrimidine antifolates: activity as inhibitors of dihydrofolate reductase from Pneumocystis carinii and Toxoplasma gondii and as antitumor agents. J. Med. Chem. 40:3040-3048[CrossRef][Medline]. |
| 46. | Rosowsky, A. 1989. Chemistry and biology of antifolates. Prog. Med. Chem. 26:1-252[Medline]. |
| 47. |
Rosowsky, A.,
V. Cody,
N. Galitsky,
H. Fu,
A. T. Papoulis, and S. F. Queener.
1999.
Structure-based design of selective inhibitors of dihydrofolate reductase: synthesis and antiparasitic activity of 2,4-diaminopteridine analogues with a bridged diarylamine side chain.
J. Med. Chem.
42:4853-4860[CrossRef][Medline].
|
| 48. | Rosowsky, A., S. F. Queener, and V. Cody. 1999. Inhibition of dihydrofolate reductases from Toxoplama gondii, Pneumocystis carinii, and rat liver by rotationally restricted analogues of pyrimethamine and metoprine. Drug Design Discovery 16:25-40[Medline]. |
| 49. | Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. |
| 50. | Sirawaraporn, W., J. C. Edman, and D. V. Santi. 1991. Purification and properties of recombinant Pneumocystis carinii dihydrofolate reductase. Protein Expr. Purif. 2:313-316[CrossRef][Medline]. |
| 51. | Sirotnak, F. M., J. J. Burchall, W. D. Ensminger, and J. A. Montgomery. 1984. Folate antagonists as therapeutic agents, vol. 1. Academic Press, New York, N.Y. |
| 52. | Then, R. L., P. G. Hartman, and I. Kompis. 1993. Selective inhibition of DHFR from problem human pathogens, P. 533-537. In J. E. Ayling, M. G. Nair, and C. M. Baugh (ed.), Chemistry and biology of pteridines and folates. Plenum Press, New York, N.Y. |
| 53. |
Volz, K. W.,
D. A. Mathews,
R. A. Alden,
S. T. Freer,
C. Hansch,
B. T. Kaufman, and J. Kraut.
1982.
Crystal structure of avian dihydrofolate reductase containing phyenyltriazine and NADPH.
J. Biol. Chem.
257:2528-2536 |
| 54. | Webber, S., and J. M. Whiteley. 1985. Comparative activity of rat liver dihydrofolate reductase with 7,8-dihydrofolate and other 7,8-dihydropteridines. Arch. Biochem. Biophys. 236:681-690[CrossRef][Medline]. |
| 55. |
Whitlow, M.,
A. J. Howard,
D. Stewart,
K. D. Hardman,
L. F. Kuper,
D. P. Baccanari,
M. E. Fling, and R. L. Tansik.
1997.
X-ray crystallopraphic studies of Candida albicans dihydrofolate reductase.
J. Biol. Chem.
272:30289-30298 |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Clin. Vaccine Immunol. | Clin. Microbiol. Rev. |
|---|---|
| J. Clin. Microbiol. | ALL ASM JOURNALS |