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Antimicrobial Agents and Chemotherapy, November 2002, p. 3597-3605, Vol. 46, No. 11
0066-4804/02/$04.00+0 DOI: 10.1128/AAC.46.11.3597-3605.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Biochemistry, Biomedical Center,1 Centre for Image Analysis, Uppsala University, Uppsala,3 Division of Clinical Virology, Karolinska Institutet, F68 Huddinge University Hospital, Stockholm, Sweden2
Received 22 January 2002/ Returned for modification 23 April 2002/ Accepted 6 August 2002
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-helical domains that are connected by a flexible linker (5, 28, 30). The amino-terminal domain (residues 1 to 146) binds cyclophilin A (CyPA) (4, 13, 14) and participates in capsid formation (8, 33, 43). The second carboxyl-terminal domain (residues 148 to 231) is involved in p55 Gag polyprotein assembly and the budding of virus particles (3, 6, 8, 41, 44). Within the carboxyl-terminal domain is a region conserved among lentiviruses known as the major homology region. Deletions in this region of the carboxyl terminal abolish the ability of HIV-1 to form infectious viral particles (8). Furthermore, an interaction between SP1 and the carboxyl-terminal domain of p24 is probably necessary, at least transiently, in order to weaken CA-CA interactions and allow the rearrangement of the capsid shell during virus maturation (20, 46). It has also been shown that extensions at the N terminal of the capsid protein with sequences corresponding to the matrix protein redirect in vitro protein assembly from cylinders to spheres (9, 19, 42). These results together with those showing that capsid cones can be formed in vitro from CA-NC fusion proteins (16) indicate that release of the capsid from the matrix protein is necessary for capsid cone formation. Moreover, the introduction of mutations in the amino-terminal domain of p24 has produced viruses with retained ability to assemble and bud but which developed aberrant capsid morphologies (8, 33, 43). The formation of a conical capsid appears to be essential, because gag mutations that disrupt proper core formation invariably lead to a reduction or loss of viral infectivity (8, 17, 33, 43, 46). Immature capsids are stable and can be isolated easily, whereas mature capsids are less stable and have only recently been successfully purified from infectious particles by mild detergent treatment and centrifugation (45). Therefore, it appears that the maturation process prepares the virus particle for infection by facilitating the disassembly of the capsid structure upon virus entry into the target cell. Substances that stabilize capsid structures and inhibit uncoating are well known inhibitors of picornavirus replication (2, 18, 32, 34).
Thus, substances that interfere with the proper assembly of p24 could be potential antiretroviral agents. In this regard, it has been shown that a 10-amino-acid-long peptide derived from the p24 amino acid sequence can block virus replication by interfering with capsid formation (31).
Here, we report that tripeptides derived from the carboxyl-terminal sequence of the HIV-1 capsid protein p24 were found to interfere with HIV-1 morphogenesis and to suppress viral replication.
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Viruses, cells, and infections. HIV-1 SF-2 stock was prepared from HUT78 cells, and two clinical isolates were prepared from donors' peripheral blood mononuclear cells (PBMC). Fifty percent tissue culture infectious doses (TCID50) were prepared as described previously (38). All T-cell lines were kindly provided by the NIBSC AIDS Reagent Project, National Institute for Biological Standards and Control, Potters Bar, United Kingdom. HUT78, H9, and ACH-2 (an HIV-1 chronically infected human T-cell line [12]) cells were propagated and maintained in RPMI 1640 medium (GIBCO Laboratories) supplemented with 10% (vol/vol) heat-inactivated fetal bovine serum (GIBCO Laboratories), penicillin, and streptomycin (100 U/ml; Sigma, St. Louis, Mo.). PBMC were purified by Ficoll-Hypaque density gradient centrifugation and stimulated with phytohemagglutinin (KEBO Lab, Stockholm, Sweden) for 3 days in RPMI 1640 medium supplemented as described above before use.
For peptide screening, 105 H9 cells were infected with HIV-1 SF-2 (25 TCID50) with or without 100 µmol of the peptides. After virus adsorption for 1 h at 37°C, the cells were washed three times in RPMI medium and then resuspended in culture medium with or without the peptides. Supernatants were collected on days 4, 7, and 11 postinfection, and the medium was refreshed in the presence (100 µM) or absence of the peptides. HIV-1 p24 antigen (ELISA kit; Abbott Laboratories, North Chicago, Ill.) and reverse transcriptase activity (Lenti RT kit; Cavidi AB, Uppsala, Sweden) in growth medium were assayed on the collected supernatants (36). Infectivity assays of the HIV-1 clinical isolates were performed as described above in PBMC stimulated for 3 days with 2.5 µg of phytohemagglutinin (Difco, Franklin Lakes, New Jersey)/ml and infected at 25 TCID50/2 x 105 cells with or without different concentrations of peptides GPG-NH2, ALG-NH2, and ALGPG-NH2 in the medium. Medium containing different concentrations of the peptides was refreshed on days 4 and 7 postinfection. The production of p24(37) in the culture supernatants collected on days 7 and 11 was measured to monitor viral replication by use of the Abbott ELISA kit.
Transmission electron microscopy (TEM) of HIV-1 assembly. Virus-infected cells were fixed by freshly made 2.5% glutaraldehyde in phosphate buffer and postfixed in 1% osmium tetroxide. The cells were embedded in Epon and poststained with 1% uranyl acetate. Sections were made to be approximately 60 nm thick to accommodate the volume of the core structure parallel to the section plane. Duplicate sample preparations were done so that possible volume changes during polymerization and the capacity to withstand electron beam exposure could both be estimated. Specimens were analyzed with a Zeiss CEM 902 electron microscope, equipped with a spectrometer to enhance image contrast, at an accelerating voltage of 80 kV. A liquid nitrogen-cooling trap for the specimen holder was used throughout. Statistical evaluation of morphology was done with a series of electron micrographs to depict different categories of virus morphology, specifically focusing on the packing of the virus core structure. A test for the difference between two population proportions was also included.
Three-dimensional (3D) visualization of the internal structure of HIV was elicited from several TEM projections taken at evenly spaced tilt angles and subjected to computer processing. Duplicate sample preparations were done so that possible volume changes during polymerization and the capacity to withstand electron beam exposure could both be estimated. Furthermore, the Epon sections were covered by an approximately 1-nm-thick carbon layer for protection. Approximately 60-nm-thick sections were cut and mounted on 400-mesh copper grids. The specimens were poststained with lead citrate. Ten-nanometer average-diameter gold particles were applied as fiduciary marks to align the images for computer analysis. The specimens were analyzed in a Zeiss CEM 902 system with a goniometer stage at 80 kV. The spectrometer unit was used to improve image quality, especially at high tilt angles. The minimal beam dose technique was employed throughout. Forty projections were obtained in each tilt series taken from -60° to +60°. All tilt series were carefully scrutinized for visible beam damage by comparison of images taken before and after the tilt series. Series of micrographs demonstrating no visible changes were further digitized with a photoscanner. Image alignment and 3D reconstruction were done essentially as described before (24; A. Höglund, personal communication). The reconstructed virus models were viewed on a computer-controlled display (Silicon Graphics O2 workstation) as vector models.
Volume images that are obtained by 3D reconstructions are important for the evaluation of virus structure. In two-dimensional (2D) micrographs, it is difficult to determine whether two overlapping objects are present, something which is clearly discernible in 3D images. Another topological feature that can be revealed in volume images, but not in 2D micrographs, is the presence of cavities in the particles, i.e., it can be determined whether the particles are solid or hollow. The 3D reconstructions also reveal surface structures of the particles that cannot be observed easily with 2D micrographs. These may be visualized by common rendering techniques (26).
The samples used for immunocytochemical analysis were fixed in 4% formaldehyde and 0.2% glutaraldehyde in phosphate-buffered saline. The rabbit anti-HIV p24 polyclonal antibody used for primary immunolabeling was obtained from an Abbott p24 ELISA kit (at dilutions of 1:5 and 1:10). For secondary immunolabeling, a goat anti-rabbit gold (5 nm diameter)-conjugated antibody was used (dilutions of 1:500 and 1:1,000; BBI International, Cardiff, United Kingdom). Low image contrast is obtained by this method irrespective of poststaining.
Affinity capillary electrophoresis (ACE). An interaction between the tripeptides and p24 is likely to be attended by a change of the charge of the peptide. Therefore, electrophoresis ought to be the method of choice for the study of these possible interactions, particularly in the capillary mode, since only minute amounts of material are required for a rapid high-resolving analysis. Capillary electrophoresis permits calculation of the electrophoretic mobility of a charged species. The electrophoretic mobility of a given species, which is related to its net surface charge density, can be used to characterize and identify a substance (7). In this study, we used the partial-filling technique, employing a non-UV-absorbing buffer and injecting a zone of the slow UV-absorbing constituent first and then a zone of the fast UV-absorbing constituent (1, 22, 40), with the HIV-1 capsid protein p24 being the slow component and five tripeptides being the fast components.
Fused silica tubing (inner diameter, 50 µm) was purchased from MicroQuartz (Munich, Germany) and cut to a length of 23 cm (effective length, 18.5 cm). A BioFocus 3000 capillary electrophoresis system (Bio-Rad Laboratories, Hercules, Calif.) was used in all experiments. The internal wall of the capillary was coated prior to use with 5% (wt/vol) linear polyacrylamide (23) in order to suppress the electroendosmotic flow and to prevent the adsorption of the proteins onto the capillary wall. Sodium phosphate solutions (0.01 M) at pH values between 6.8 and 8.2 were used as buffers. The polarity was negative (the detection point was closer to the cathode) for GPG-NH2, ALG-NH2, and RQG-NH2 at pH values between 6.8 and 7.5 (see Fig. 2a) but positive (the detection point was closer to the anode) at pH 8.2, which was also the case for GPG-OH and ALG-OH (see Fig. 2b). The peptides have low UV absorbance and were therefore dissolved in the buffer at a relatively high concentration (0.5 mg/ml) to permit online monitoring by a standard UV detector. The stock solution of p24 was diluted 10-fold with the running buffer to a final concentration of 50 µg/ml. Hemoglobin was prepared from human red blood cells from a healthy donor following the method described by Molteni et al. (29). The normal hemoglobin variants in blood have isoelectric points (pI) between 6.7 and 7.4, with the major component having a pI of 6.9. The concentration of the hemoglobin solution was much higher than that of p24.
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FIG. 2. Capillary electrophoresis analysis of the tripeptides in the absence and presence of HIV-1 p24. The migration of GPG-NH2 in the presence of p24 (II) was retarded compared with the migration in the absence of the protein (I), whereas the migration time of GPG-OH was the same in the presence (IV) and in the absence (III) of p24. The positions of the starting zones in the capillary are indicated below each electropherogram.
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Dialysis of [14C]GPG-NH2 versus p24. Fifty microliters of 10 µM solutions of recombinant protein p24 (NIBSC AIDS Reagent Project) or, as controls, recombinant gp120 (NIBSC AIDS Reagent Project) or bovine serum albumin (BSA; Sigma) was dialyzed, using a 10-kDa cutoff dialysis cassette (Slide-A-Lyzer; Pierce), against 27.5 µM [14C]GPG-NH2 in 500 ml of 150 mM NaCl and 50 mM Tris-HCl, pH 7.4, buffer at 4°C for 2 days. Radioactivity was quantified in a Rackbeta 1218 instrument (LKB-Wallac) after mixing 10 or 5 µl of the protein solutions with 3 ml of ReadySafe (Beckman).
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FIG. 1. Screening of the peptides corresponding to the C terminus of p24 for antiviral activity. (a) The HIV-1 capsid protein p24 amino acid sequence (15) secondary structure and the overlapping tripeptides were tested for antiviral activity. Peptides with inhibitory effects, as determined by p24 production and reverse transcriptase activity in the culture supernatants, of >90% are indicated in red, of 80 to 89% are indicated in blue, and of 50 to 79% are indicated in green. The regions in the sequence of p24 shown with waved shading represent helical structures. MHR, major homology region. (b) The antiviral activities of peptides ALG-NH2 and ALGPG-NH2 were compared with that of GPG-NH2 in HUT78 cells infected with HIV-1 SF-2 and in PBMC infected with two clinical isolates. All results presented are the means of triplicate cultures.
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The migration times of the peptides were determined at pH values of 6.8, 7.5, and 8.2 in the absence (t1 values in Table 1) and presence (t2 values in Table 1) of the protein. Figure 2 shows four typical electropherograms. As a measure of the interaction, we used the relative difference between the mobilities (RDM) in the presence and absence of protein {[(u1 - u2)/u1] x 100}. Note that the parameter RDM is not equivalent to the capacity factor since the peptides do not interact with p24 during the entire migration time. Accordingly, in terms of RDM, GPG-OH and ALG-OH showed almost no affinity to recombinant p24 whereas GPG-NH2, ALG-NH2, and RQG-NH2 interacted with it. Hemoglobin was chosen as a control protein because it has an isoelectric point similar to that of the capsid protein. In addition, hemoglobin (molecular weight, 68,000) has almost three times more amino acid residues than p24, which increases the possibility for unspecific interactions with tripeptides. In the series of experiments where p24 was replaced by hemoglobin, no differences in the migration times of the peptides were observed (Table 1). The three amidated tripeptides at all pH values tested (6.8 to 8.2) gave increased RDM values, indicating an interaction with p24 (Table 1). The two nonamidated tripeptides did not show any interaction with p24 at pH 8.2. We used this pH because the electrophoretic mobilities of these peptides at pH 6.8 and 7.5 are too low to permit interaction studies.
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TABLE 1. ACE analysis of the interaction between tripeptides and HIV-1 p24 and human hemoglobin (used as control protein)a
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Evaluation of virus assembly with TEM tilt series. In the initial experiments with HUT78 cells infected with HIV-1 SF-2, GPG-NH2 was added at the time of infection. However, too few virus particles were produced to permit statistical analysis. Therefore, TEM was performed on HUT78 cells to which the tripeptides were added 6 days postinfection. The cells were then cultured for an additional 4 days before being fixed for TEM. TEM was also performed on ACH-2 cells, which already carried 1 copy of HIV-1 proviral DNA and which were stimulated to produce virus by the addition of 100 nM phorbol-12-myristate-13-acetate (PMA) to the culture medium. After stimulation for 3 days, the ACH-2 cells were harvested. The results, i.e., changes in the morphology of the virus particles (Fig. 3) (see also below), obtained with ACH-2 cultures pretreated with 100 µM concentrations of the peptides for 4 days prior to stimulation to produce virus (Fig. 3f) were similar to those obtained with cultures to which a 1 mM concentration was added on the day of stimulation. Since HUT78 cells pretreated with GPG-NH2 or ALG-NH2 produce too few virus progeny to permit statistical analysis of the changes observed by TEM, the statistical results presented here were all from cultures treated at a peptide concentration of 1 mM. As an internal reference in every experiment, TEM was performed on virus particles and HIV-1-infected cells from infected cell cultures without tripeptides. Sixty-nanometer-thick slices of sample were made to allow the accommodation of viral core structure with a proper section plane.
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FIG. 3. Morphological study of the HIV-1 virions produced from the GPG-NH2-treated HUT78 cells from tilt series by TEM and 3D reconstruction. (a) Control virions from untreated cells showing a characteristic dense, conical capsid (middle) and a round, dense disk upon tangential sectioning. (b and c) Dense nodular material is shown protruding from the viral envelope. (c and e) Dislocation is shown, with dense material in the broad end and low density in the narrow part of the viral capsid. A nodule is also shown in panel e (arrow). (d) Round, dense material is shown accommodated outside of an empty conical capsid. (f) Virions from ACH-2 cells pretreated with 100 µM GPG-NH2 also showed dislocation of viral capsid material. (g) Evaluation by 3D reconstruction of the control virion from untreated cells. The volume rendering shows a tight, cone-shaped capsid which is attached by its narrow part to the viral envelope. (h) Evaluation by 3D reconstruction of HIV-1 particle from GPG-NH2-treated cells. This volume rendering shows tight viral capsid material irregularly condensed in the broad part of the capsid. Bar, 100 nm.
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TABLE 2. Statistical evaluation of electron micrographs of sectioned HIV-1 virions prepared from infected HUT78 cells
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FIG. 4. The unique nodular structures on the cell outer membrane and viral envelope in HUT78 cells treated with GPG-NH2. Shown are dense viral nodules that are approximately 50 nm in size and an HIV-1 virion with a nonhomogenous capsid. (a) By use of a tilt series (+45°, 0°, and -45° [top, middle, and bottom panels, respectively]), three different nodules are shown (indicated by arrows), two of which are condensed as budding structures of the cell membrane while the third (right) is attached to the outside of the viral envelope. (b) Two different viral nodules, prepared by the immune electron microscopy technique, are shown. A dense protruding nodular unit is shown (left) along with another nodule at the cell membrane (right). Attached gold labels of anti-p24 antibodies (arrows) are clearly visible on the nodules. (c) 3D reconstruction of a tilt series of electron micrographs. The volume rendering shows the surface of a dense viral nodule, which is shown attached to part of the cell membrane with a narrow junction. Bars, 100 nm.
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It is possible that the tripeptides bind to another protein contained in the virus particle, such as CyPA, or that binding of tripeptides to p24 interferes with its binding to another protein necessary for capsid formation. Recently, it was reported that CyPA binds with high affinity to a peptide corresponding to p24 amino acids 214 to 228 (10) that contains a GP motif (residues 223 and 224), which is a prerequisite for CyPA binding (11, 14, 39, 47, 48), that coincides with the site of the carboxyl-terminal GPG (residues 223 to 224) sequence of p24. However, it has been shown previously that the dipeptide GP-NH2, in contrast to the dipeptide PG-NH2, does not inhibit HIV-1 replication (35). Furthermore, preliminary ACE studies on CyPA-GPG-NH2 interactions have shown that this protein binds GPG-NH2 less well than does p24 (our unpublished results). Further studies on the affinity of the tripeptides for both cellular and viral structural proteins might contribute to our understanding of virion morphogenesis. The observations in the present study, however, confirm our earlier findings that the effect of GPG-NH2 on HIV-1 probably occurs at a late stage of the viral replication cycle. Additionally, in vitro studies using electron microscopy and dynamic light scattering have shown that GPG-NH2 can hinder the self-assembly of tubular structures of p24 (D. van der Spoel, C. Hetényi, A. McKenzie-Hose, L. Ågren, L. Goobar-Larsson, S. Höglund, and A. Vahlne, submitted for publication).
A striking finding in the present study was the observation of dense nodular structures at the plasma membrane of HIV-1-infected cells treated with GPG-NH2 or ALG-NH2. No such structures were seen in untreated infected cells or in GPG-NH2-treated ACH-2 cells, which were not stimulated to produce virus. The nodules contain the capsid protein p24, as determined by immune electron microscopy. Their size and density were similar, if not identical, to those of the broad end of the mature HIV-1 core structure. Possibly, these nodules represent virus particles that were arrested in their budding. If so, activation of the HIV-1 protease in such virus structures arrested at the plasma membrane might have cleaved off the p17 matrix protein, allowing the remaining polyprotein to condense, generating incomplete capsid structures trapped in the plasma membrane. Notably, no such nodular structures were observed after combined treatment with GPG-NH2 and an inhibitor of the viral protease.
New classes of antiviral pharmaceuticals are warranted in the fight against the AIDS epidemic. In the future, small peptides or peptidomimetic molecules derived from the peptides described in the present paper might prove useful for the treatment of HIV-infected individuals.
This study was supported by grants from the Swedish Medical Foundation (grant no. K2000-06X-09501-10B), Tripep AB, and the Swedish Research Council for Engineering Sciences.
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