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Antimicrobial Agents and Chemotherapy, May 2002, p. 1262-1268, Vol. 46, No. 5
0066-4804/02/$04.00+0 DOI: 10.1128/AAC.46.5.1262-1268.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
NewBiotics, Inc., San Diego, California 92121,1 Salk Institute, La Jolla, California 92037-10992
Received 16 April 2001/ Returned for modification 26 July 2001/ Accepted 18 January 2002
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ß-Lactam antibiotics are among the most widely used antimicrobial agents. Mechanistically, they act by covalently binding to penicillin-binding proteins in the cytoplasmic membrane of bacteria, thereby inhibiting peptidoglycan transpeptidase and eventually leading to cell death (32).
A common mechanism for bacterial resistance to ß-lactam antibiotics is via production of ß-lactamases, which catalyze the hydrolysis of the amide bond of the ß-lactam ring, resulting in ring opening and antibiotic inactivation. Numerous ß-lactamases exist, encoded either by chromosomal genes or by transferable genes located on plasmids or transposons (3, 17). Four molecularly distinct ß-lactamase classes (A, B, C, and D) have been defined based on amino acid and nucleotide sequence analysis (18). Of these, class A, to which the plasmid-mediated TEM-1 enzyme belongs, is the most prevalent in clinical isolates (26).
The classical approach to circumvent resistance has been to develop new ß-lactam antibiotics resistant to ß-lactamase hydrolysis. However, new ß-lactamases have risen to meet the challenge of new synthetic ß-lactam derivatives (11, 14, 18, 25). A second approach has been to develop novel antibiotics. However, these agents are often more toxic than their predecessors, and many are not orally active. A third strategy is to develop ß-lactamase inhibitors that have been successful primarily with class A enzymes. However, resistance to ß-lactamase inhibitors via point mutations in the ß-lactamase gene has been reported (25). Further, some ß-lactamase inhibitors (e.g., clavulanic acid and sulbactam) induce ß-lactamase expression, which diminishes their effectiveness (10, 15). Thus, a new approach is needed to intercept the established cycle of drug resistance.
Enzyme-catalyzed therapeutic activation (ECTA) is a novel prodrug strategy to overcome drug resistance resulting from enzyme overexpression. In this approach, specific enzyme substrates are designed for conversion by the overexpressed enzyme into cytotoxic agent(s). Based on the ECTA concept, ß-lactamase can be used as an engine to generate antibacterial agents in drug-resistant microorganisms. We describe here the design, synthesis, and in vitro evaluation of the ß-lactamase ECTA compound NB2001. The formation of triclosan from NB2001 via ß-lactamase hydrolysis is demonstrated. The dependence of antibacterial activity on ß-lactamase is demonstrated in an Escherichia coli model system, where NB2001 was more active against a TEM-1 ß-lactamase-overproducing strain than a nonproducing strain; its antibacterial activity against the former was antagonized by ß-lactamase inhibitors. Further in vitro studies showed NB2001 to be active against major gram-positive and gram-negative pathogens.
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Bacterial strains. E. coli BL21(DE3) and E. coli N (Novablue) were obtained from Novagen (Madison, Wis.). The E. coli/TEM-1 clone was generated by transforming plasmid pcDNA3.1(-) (Invitrogen, San Diego, Calif.), which constitutively expresses TEM-1 ß-lactamase, in E. coli N. The bacterial strains used for determining antimicrobial activity included Staphylococcus aureus strains 700698, 700699, 43300, 700787, 700788, 700789, 33591, 33592, 33593, 33594, 700260, 13301, 11632, and 14154 (American Type Culture Collection [ATCC], Manassas, Va.). A total of 300 recent clinical isolates tested in the Microbiology Reference Lab (MRL) in Herndon, Va., were procured from the MRL Bacterial Culture Collection and included S. aureus oxacillin-susceptible (n = 20), S. aureus oxacillin-resistant (n = 20), Staphylococcus epidermidis oxacillin-susceptible (n = 15), S. epidermidis oxacillin-resistant (n = 15), Streptococcus pneumoniae (n = 10), Enterococcus faecalis (n = 15), Enterobacter cloacae (n = 30), Enterobacter aerogenes (n = 30), E. coli (n = 30), Klebsiella pneumoniae (n = 30), Pseudomonas aeruginosa (n = 10), Haemophilus influenzae (n = 30), and Moraxella catarrhalis (n = 30) strains.
All bacteria were grown in cation-adjusted Mueller-Hinton (MH) broth, except for H. influenzae, which was grown in Haemophilus Test Medium broth, and Streptococcus pneumoniae, which was grown in cation-adjusted MH broth supplemented with 2 to 5% lysed horse blood.
Bacterial cultures were tested for ß-lactamase production by use of nitrocefin according to the manufacturer's instructions.
Synthesis of NB2001. (i) Diphenylmethyl 7-(2-thienylacetylamino)-3-{[5-chloro-2-(2,4-dichlorophenoxy)phenoxymethyl}-3-cephem-4-carboxylate (com-pound II [Fig. 1]) A solution of diphenylmethyl 7-(2-thienylacetylamino)-3-hydroxymethyl-3-cephem-4-carboxylate (compound I in Fig. 1) (28) (0.52 g, 1.0 mmol) and triclosan (0.36 g, 1.25 mmol) in anhydrous THF (10 ml) was cooled to -20°C in a dry-ice bath under an argon atmosphere. A solution of triphenylphosphine (0.32 g, 1.25 mmol) in anhydrous THF (5.0 ml) was then added by using a syringe. After 10 min, a solution of diisopropyl diazodicarboxylate (0.25 g, 1.25 mmol) in THF (5.0 ml) was added slowly by using a syringe pump over 40 min. The reaction mixture was then poured into water and extracted twice with ethyl acetate (25 ml each time). The combined ethyl acetate extracts were washed sequentially with water and brine and dried over Na2SO4. Removal of volatiles, followed by purification on a silica gel column with 5% ethyl acetate in dichloromethane, provided compound II as light yellow solid (yield = 0.32 g, 32%).
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FIG. 1. Outline of synthesis and chemical structure of NB2001 and its precursors. For details of this synthesis, see Materials and Methods.
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3.10 (1H, d, J = 16.5 Hz), 3.75 (2H, qAB, J = 15.17, 4.75 Hz), 4.80 (1H, d, J = 12.0 Hz), 4.97 (1H, d, J = 12.0 Hz), 5.03 (1H, d, J = 4.0 Hz), 6.80 (1H, d, J = 8.7 Hz), 6.92 to 6.95 (2H, m), 7.09 to 7.07 (1H, m), 7.16 (1H, d, J = 8.7 Hz), 7.29 to 7.31 (1H, m), 7.31 to 7.37 (1H, m), 7.72 (1H, d, J = 2.8 Hz), and 9.11(1H, d, J = 8.3 Hz). Infrared analysis (neat) 1,767, 1,715, 1,662, and 1,495 cm-1. The purity of NB2001 was 98.2% as determined by high-pressure liquid chromatography (HPLC).
Chemical analyses.
Flash chromatography was performed on Merck grade 60 silica gel (230 to 400 mesh). Infrared spectra were measured neat on a Nicolet Avatar 320 spectrophotometer and are reported as per-centimeter values. Proton nuclear magnetic resonance spectra were recorded in a Varian Associates Gemini (Bruker Instruments) spectrometer operating at 500 MHz, and chemical shifts were reported relative to an internal tetramethylsilane reference at
= 0.0 ppm. Melting points are uncorrected.
Susceptibility testing. MICs of antimicrobial compounds were determined by the broth microdilution method (range, 0.016 to 128 µg/ml) in 96-well microtiter plates, according to National Committee for Clinical Laboratory Standards guidelines (5). Stock solutions of test compounds were prepared in water or DMSO, depending on their solubility. In the latter case, DMSO concentration in the incubation mixture did not exceed 0.5%. The bacterial inoculum was 5 x 105 CFU/ml, and growth was monitored by measuring the increase in the optical density at 600 nm (OD600) with a microplate reader (Tecan SpectraFluor Plus). MIC was defined as the lowest antibiotic concentration at which bacteria growth (OD600 > 0.05, i.e., a value equal to visible growth) was inhibited after 18 to 24 h of incubation at 35°C.
Time-kill kinetics. Overnight liquid cultures of E. coli/ TEM-1 were diluted 100 times into MH broth and allowed to grow to exponential phase (OD600 = 0.6). Bacteria were next diluted into fresh medium to give a working concentration of 106 CFU/ml. NB2001 or triclosan was added to a final concentration corresponding to 2x, 4x, and 8x MIC, and the suspension was incubated at 37°C. Aliquots (0.1 ml) were removed at 1-h intervals for up to 6 h of incubation. Serial 10-fold dilutions down to 10-6 were prepared in saline and plated onto agar plates. The plates were incubated for 24 h at 37°C to obtain CFU counts.
Preparation of TEM-1 ß-lactamase. An N-terminal His-tagged TEM-1 construct, TEM-1/pET28b(+), was generated by subcloning TEM-1 into the NcoI and HindIII sites of pET28b(+) vector. TEM-1 was prepared by transforming TEM-1/pET28b(+) into E. coli BL21(DE3) (Novagen) strain. After induction with IPTG (isopropyl-ß-D-thiogalactopyranoside), TEM-1 was purified by affinity chromatography on a Ni2+ His-binding metal chelation resin (Novagen). The Ni2+ His-binding metal chelation column was washed with 20 mM Tris (pH 7.9)-5 mM imidazole-0.5 M NaCl. TEM-1 was eluted with 20 mM Tris (pH 7.9), 100 mM imidazole, and 0.5 M NaCl at room temperature and dialyzed against 100 mM Tris (pH 8.0). Aliquots were stored at -80°C.
ß-Lactamase assays.
Initial assessment of partially purified ß-lactamase TEM-1 was by use of the chromogenic substrate nitrocefin on a Tecan Spectrafluor Plus with a 495 cutoff filter on the excitation path. Nitrocefin in concentrations ranging from 2 to 100 µM, diluted from a 10 mM stock in DMSO, was added to 100 mM potassium phosphate (pH 7.2) and 1 mM EDTA and incubated at 37°C for 15 min. After thermal equilibrium, 0.25 µg of TEM-1 ß-lactamase/ml was added and the hydrolysis product, nitrophenol, was monitored at 486 nm. The extinction coefficient,
, of nitrophenol (15,900 M-1 cm-1) was determined from a standard curve of the total hydrolysis of nitrocefin and found to be consistent with published values (1).
Enzyme hydrolysis of NB2001 was determined by fixed-time assays of varied concentrations of NB2001, followed by the addition of a 1% TFA quench. The hydrolysis product, triclosan, was separated from NB2001 by use of an HP1100 series HPLC equipped with an Alltech Adsorbosphere HS(C18) 5-ml column (50 by 4.6 mm). The mobile phase was isocratic, containing 55% acetonitrile and 0.1% TFA, producing retention times of 20.4 and 24.1 min for triclosan and NB2001, respectively. The flow rate was 1 ml min-1. Quantitation of triclosan was based on the A260 integrated peak area compared to triclosan standards.
Detection of triclosan formed from NB2001 in E. coli/TEM-1. Overnight cultures of both wild-type E. coli N and the ß-lactamase-producing strain E. coli/TEM-1 were diluted 100 times with fresh Luria broth (LB) medium, and cells were grown at 37°C with shaking at 230 rpm for 4 h. Cells were then diluted with fresh LB medium containing 100 µM NB2001 until the OD600 reached 0.2. Culture aliquots were removed at different time intervals, and the cells were pelleted by centrifugation at 10,000 x g for 2 min at 4°C. The supernatant was removed and combined with 500 µl of acetonitrile. The pelleted bacterial cells were resuspended in 100 µl of phosphate-buffered saline (pH 8.0; Gibco-BRL) and subjected to three cycles of freeze-thawing, followed by the addition of 500 µl of acetonitrile. Both pellet and supernatant extracts were centrifuged at 10,000 x g for 2 min at 4°C. Then, 550 µl of the resultant supernatant was transferred into a new Eppendorf tube and vacuum dried. Dried pellets were resuspended in 50 µl of H2O, and 100 µl of acetonitrile was added. Finally, 75 µl of the resulting solution was analyzed by HPLC as described above.
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NB2001 hydrolysis by TEM-1 ß-lactamase. NB2001 was examined as a substrate of TEM-1 ß-lactamase and compared to nitrocefin, a widely used chromogenic ß-lactamase substrate with the same C-7 side chain as NB2001. As shown in Table 1, the kinetic parameters of NB2001 were comparable to nitrocefin. Interestingly, nitrocephin hydrolysis was slower than that reported in the literature, probably due to the fact that the TEM-1 enzyme was His tagged. In a further study, TEM-1 ß-lactamase-mediated hydrolysis of NB2001 was found to be associated with the concomitant production of triclosan (Fig. 2).
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TABLE 1. Comparison of the ß-lactamase TEM-1 kinetic constants for NB2001 and nitrocefina
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FIG. 2. Time course of TEM-1-catalyzed formation of triclosan from NB2001. Assays were conducted at 37°C in 100 mM potassium phosphate buffer (pH 7.2) with 1 mM EDTA and 0.5 µg of TEM-1 ß-lactamase/ml. A hydrolysis product (triclosan) was separated from NB2001 by HPLC as described in Materials and Methods. In the absence of TEM-1 ß-lactamase, NB2001 was stable for at least 5 h at 37°C.
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FIG. 3. Formation of triclosan from NB2001 in E. coli. E. coli N and ß-lactamase-expressing E. coli/TEM-1 were treated with NB2001 under the conditions described in Materials and Methods. Culture aliquots were removed at 0, 5, and 15 min. The amount of NB2001 and triclosan was assessed by HPLC.
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TABLE 2. Activity of NB2001 with or without ß-lactamase inhibitors against wild-type and ß-lactamase-producing E. coli
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0.016 µg/ml, which is at least 32-fold lower than vancomycin (MIC50 = 0.5 µg/ml) (Table 3). NB2001 exhibited higher activity against most ß-lactamase-producing S. aureus strains than the nonproducing ATCC 700698, although the ß-lactamase nonproducer was also sensitive to triclosan (MIC = 0.063 µg/ml). Predictably, NB2001 was not very active against two ß-lactamase-producing, but relatively triclosan-resistant strains ATCC 33594 and ATCC 13301 (Table 3). |
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TABLE 3. Antibacterial activities of NB2001 and reference antibiotics against S. aureus
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TABLE 4. In vitro activities of NB2001 and reference antimicrobial agents against recent clinical isolates of gram-positive bacteria (obtained from MRL)
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TABLE 5. In vitro activities of NB2001 and reference antimicrobial agents against gram-negative bacteria
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NB2001 was also active against gram-negative species (Table 5). Its MIC50s against ß-lactamase-producing M. catarrhalis and H. influenzae were at least fourfold superior to ciprofloxacin. Against Enterobacter aerogenes, Enterobacter cloacae, E. coli, and K. pneumoniae, NB2001 was more active than amoxicillin-clavulanate, ceftazidime, or ceftriaxone and less active than imipenem and ciprofloxacin. However, NB2001 showed no activity against P. aeruginosa (Table 5).
Of the 60 M. catarrhalis and H. influenzae isolates tested, 40 were ß-lactamase-producing strains. The distribution of NB2001 MICs clearly showed greater activity against ß-lactamase-producing strains than ß-lactamase-negative ones (Fig. 4).
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FIG. 4. Susceptibility to NB2001 of ß-lactamase-positive and -negative strains of M. catarrhalis and H. influenzae.
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FIG. 5. Time-kill curve of NB2001 and triclosan against ß-lactamase-producing E. coli. The compounds were added to log-phase cultures of E. coli/TEM-1 and incubated at 37°C. Culture aliquots were removed every hour up to 6 h, and the number of cells (CFU) was determined as described in Materials and Methods.
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The structure of NB2001 is similar to that of cephalothin and nitrocefin. It is composed of a cephem core with a 2-thienylacetylamino side chain at the 7-position, which is an important determinant of ß-lactamase binding. In addition, NB2001 contains a prodrug form of the antimicrobial agent triclosan, which is converted to its fully active form by ß-lactamase. Triclosan is a broad-spectrum agent that acts via inhibition of the enoyl-acyl carrier protein reductase (FabI) (7, 8, 12). Because of its high potency in bacteria and its low toxicity in humans, triclosan itself is widely used in formulations as diverse as antiseptic soap, toothpaste, cosmetics, and household products (2).
NB2001 was designed to have a dual mode of action: cephalosporin activity against ß-lactamase-negative organisms and triclosan-associated activity against ß-lactamase-producing strains. As we have shown, NB2001 is a good substrate for ß-lactamase TEM-1. The idea of multiple mechanisms of action for NB2001 is supported by the low frequency (<10-8) of bacteria resistant to NB2001 (unpublished data).
ß-Lactamase ECTA compounds have enhanced activity against ß-lactamase-producing strains but also good activity against ß-lactamase-negative strains. For example, in E. coli N NB2001 has higher activity relative to cephalothin (Table 2). The higher activity might be due to triclosan production via hydrolysis by ß-lactamases present in amounts undetectable by the nitrocefin test and/or acylation of target penicillin-binding proteins.
NB2001 had potent activity against S. aureus, a major human pathogen (19, 30) of increasing significance in nosocomial drug-resistant infections (6, 20, 27, 31). The compound was also active against a number of clinically important gram-positive and -negative pathogens. Its high potency against problem pathogens such as methicillin-resistant staphylococci (S. aureus and S. epidermidis) and vancomycin-resistant Enterococcus faecalis underscores its potential for clinical use.
P. aeruginosa is known to be resistant to a variety of antibiotics. The primary reason for the multidrug resistance of P. aeruginosa is its outer membrane (4) in combination with multidrug efflux pumps (13, 23). We have confirmed both of these reasons to account for the low activity of NB2001 against P. aeruginosa (unpublished data).
Antibiotics used in the treatment of most common bacterial infections attack only a few distinct targets in the pathogen (24), such as cell wall synthesis, protein synthesis, or DNA gyrase. ECTA represents a novel approach in that bacterium-specific, enzymatic antibiotic activation allows the use of antibiotics with toxic liabilities, thus expanding the number of bacterial targets. In addition, as the case of NB2001 clearly shows, the ECTA approach is an effective way of harnessing drug resistance caused by enzyme overexpression.
Present address: Palomar Research, Inc., Encinitas, CA 92093-1989. ![]()
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