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Antimicrobial Agents and Chemotherapy, September 2002, p. 2765-2771, Vol. 46, No. 9
0066-4804/02/$04.00+0 DOI: 10.1128/AAC.46.9.2765-2771.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Oxidative Stress Increases Susceptibility of Mycobacterium tuberculosis to Isoniazid
Vanja M. Bulatovic,1 Nancy L. Wengenack,2 James R. Uhl,2 Leslie Hall,2 Glenn D. Roberts,2 Franklin R. Cockerill III,2 and Frank Rusnak1*
Section of Hematology Research and Department of Biochemistry and Molecular Biology ,1
Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota2
Received 5 March 2002/
Returned for modification 23 April 2002/
Accepted 23 May 2002

ABSTRACT
Isoniazid is a first-line antibiotic used in the treatment of
infections caused by
Mycobacterium tuberculosis. Isoniazid is
a prodrug requiring oxidative activation by the catalase-peroxidase
hemoprotein, KatG. Resistance to isoniazid can be obtained by
point mutations in the
katG gene, with one of the most common
being a threonine-for-serine substitution at position 315 (S315T).
The S315T mutation is found in more than 50% of isoniazid-resistant
clinical isolates and results in an

200-fold increase in the
MIC of isoniazid compared to that for
M. tuberculosis H37Rv.
In the present study we investigated the hypothesis that superoxide
plays a role in KatG-mediated isoniazid activation. Plumbagin
and clofazimine, compounds capable of generating superoxide
anion, resulted in a lower MIC of isoniazid for
M. tuberculosis H37Rv and a strain carrying the S315T mutation. These agents
did not cause as great of an increase in isoniazid susceptibility
in the mutant strain when the susceptibilities were assessed
by using the inhibitory concentration that causes a 50% decrease
in growth. These results provide evidence that superoxide can
play a role in isoniazid activation. Since clofazimine alone
has antitubercular activity, the observation of synergism between
clofazimine and isoniazid raises the interesting possibility
of using both drugs in combination to treat
M. tuberculosis infections.

INTRODUCTION
Entering the 21st century,
Mycobacterium tuberculosis, the causative
agent of tuberculosis (TB), remains a major cause of morbidity
and mortality worldwide. TB causes 1.9 million deaths annually
among a pool of infected individuals close to 2 billion people
(
47).
Isoniazid (INH) is one of the most effective and widely used therapeutic agents for the treatment of TB. M. tuberculosis shows exceptional sensitivity to INH, being several orders of magnitude more sensitive than most other bacterial species. Much is known about the mechanism of INH activation, including that fact that it is a prodrug requiring activation by the catalase-peroxidase hemoprotein, KatG (13, 18, 19), in a process that requires molecular oxygen (49). It has been further shown that the activated form of INH forms a covalent adduct with NAD+ to generate a potent inhibitor of the InhA protein of M. smegmatis, an enoyl-acyl carrier protein reductase important in mycolic acid biosynthesis (26, 30, 40). Recent investigations have led to the hypothesis that the sensitivity of M. tuberculosis to INH may be governed by the level of expression of the alkyl hydroperoxide reductase, AhpC, since M. tuberculosis does not express the ahpC gene due to inactivation of the oxidative stress regulatory gene oxyR (5, 6, 32, 38, 52).
Nevertheless, specific details regarding the mechanism of action of INH, such as the chemical nature of the activated form of INH, have yet to be determined. For example, InhA as the primary target for INH in M. tuberculosis has been questioned following the discovery of a covalent complex of INH, acyl carrier protein (AcpM), and the ß-ketoacyl acyl carrier protein synthase, KasA (21, 22).
Rates of resistance to INH and other antibiotics have been increasing such that now approximately 13% of all TB cases in the United States are resistant to at least one first-line drug (INH, rifampin, pyrazinamide, ethambutol, and streptomycin) (23). INH-resistant M. tuberculosis has been associated with deletions or point mutations in the katG gene (1, 12, 21, 24, 37, 45, 51, 53), with the threonine-for-serine substitution at position 315 (S315T) in katG being one of the most common mutations found in clinical isolates. A comparison of M. tuberculosis KatG with cytochrome c peroxidase, a member of the same catalase-peroxidase superfamily, suggests that S315 occupies a position near the active site of KatG, and therefore, the S315T mutation could affect the enzymatic activity of KatG (12).
Besides exhibiting catalase and peroxidase activities, several other enzymatic activities have been associated with M. tuberculosis KatG, including Mn(II)-dependent peroxidase (19, 50), peroxynitritase (46), and cytochrome P450-like monooxygenase (18) activities. The KatG protein and the KatG protein with the S315T mutation [KatG(S315T)] have comparable catalase and peroxidase activities, and KatG(S315T) is able to oxidize INH at equivalent rates using a hydroperoxide as oxidant, suggesting that the peroxidase activity of KatG may not be relevant for the in vivo activation of INH (31, 44, 45). In the presence of dioxygen but the absence of a hydroperoxide, INH is oxidized more slowly by KatG(S315T) than by KatG, a phenomenon that has been shown to involve superoxide and that may reflect why the S315T mutation confers INH resistance (44). Superoxide is formed during INH oxidation and is thought to be involved in the activation process (33-35). INH oxidation via this route is thought to involve a monooxygenase pathway in which an oxyferrous KatG intermediate is formed by either dioxygen binding to ferrous KatG (18) or superoxide binding to ferric KatG (44). These biochemical observations support the hypothesis that a mechanism other than the catalase-peroxidase route plays an important role in INH resistance. Direct evidence for this was provided by Drlica and colleagues (41), who showed that the superoxide generator plumbagin resulted in an increase in the bacteriostatic activity of INH against M. smegmatis, a strain normally resistant to INH.
In the study described in this report we tested the hypothesis that superoxide plays a role in KatG-mediated INH oxidation in M. tuberculosis. Radiometric analyses were conducted to determine MICs and the inhibitory concentrations of drug that cause a 50% decrease in strain growth (IC50s) of INH alone and INH in combination with superoxide-generating substances, plumbagin or clofazimine, for an INH-sensitive M. tuberculosis strain and an INH-resistant strain containing the katG S315T mutation.

MATERIALS AND METHODS
Bacterial strains.
The
M. tuberculosis strains used in this study, strains H37Rv
and TBC3, were grown on Middlebrook 7H10 slants at 37°C.
TBC3 is an INH-resistant clinical isolate.
Drugs and reagents.
Dimethyl sulfoxide (DMSO), INH, clofazimine, and plumbagin (technical grade) were purchased from Sigma Chemical Co. (St. Louis, Mo.); shrimp alkaline phosphatase and exonuclease I were provided by U.S. Biochemicals (Cleveland, Ohio). INH was recrystallized from boiling methanol by using activated charcoal decolorization and hot filtration through Whatman no. 1 filter paper (Whatman International Ltd., Maidstone, United Kingdom). The crystals were vacuum filtered, washed with ice-cold methanol, and air dried, yielding white needles with a melting point of 172°C. INH was dissolved in water and filter sterilized through a 0.22-µm-pore-size filter. For stock solutions of clofazimine (16.9 µM) and plumbagin (1.6 mM), 4% DMSO was used as the solvent. Appropriate controls were included to ensure that the inhibitory effects of the drugs were not due to the addition of DMSO, although there are data indicating that this solvent enhances the potencies of the drugs (3).
DNA sequencing and sequence analysis.
The presence of a wild-type katG gene in strain H37Rv and a katG gene harboring the S315T mutation in strain TBC3 was confirmed by restriction fragment length polymorphism analysis (4). Sequencing of the DNA of the entire katG gene from TBC3 was also carried out to confirm the presence of the S315T mutation and the absence of secondary mutations. Briefly, the katG gene was amplified by PCR, and the genomic DNA was isolated from TBC3. Genomic DNA was isolated by inoculating a 10-µl loopful of a culture into a tube containing 100 µl of water. Approximately 2 ml of alkaline wash solution (0.05 M sodium citrate, 0.5 M sodium hydroxide) was added. After centrifugation (at 28,800 x g for 2 min) the supernatant was discarded. Approximately 500 µl of 0.5 M Tris HCl (pH 8.0) buffer was added. After centrifugation the supernatant was discarded and 100 µl of sterile distilled water was added. The tube was incubated at 95°C for 15 min. The following oligonucleotide primers whose sequences are specific for sequences flanking the katG gene (GenBank database accession number X68081) were used as primers in the PCR: KatG 5' (5'-CCGACACTTCGCGATCACATCCGTGATCACAGCCC-3') and KatG 3' (5-GGTGCTGCGGCGGGTTGTGGTTGATCGG-3'). The PCR was carried out with a 50-µl reaction volume containing PCR buffer, genomic DNA (2 µl), 1.1 mM magnesium diacetate, 200 µM deoxynucleoside triphosphates, each primer at a concentration of 0.2 µM, and 1 U of rTth DNA polymerase (GeneAmp XL PCR kit; Applied Biosystems, Foster City, Calif.). The mixture was overlaid with AmpliWax PCR Gem (Applied Biosystems) and heated for 1 min at 94°C, followed by 35 cycles of 1 min at 94°C and 2.5 min at 72°C. A single 2,200-bp band corresponding to the amplified product was detected by ethidium bromide staining after electrophoresis on 0.9% (wt/vol) agarose. The PCR product was prepared for sequencing by treatment with shrimp alkaline phosphatase to dephosphorylate all remaining deoxynucleoside triphosphates and with exonuclease I to degrade all residual single-stranded DNA present in the PCR mixture. The entire katG gene was sequenced with the ABI PRISM Big Dye Terminator Cycle Sequencing Ready Reaction kit with AmpliTaq DNA polymerase on an ABI PRISM 377 DNA sequencer with XL Upgrade and 96-well Upgrade (Perkin-Elmer Applied Biosystems, Foster City, Calif.) by using eight primers whose sequences were specific for sequences that spanned the length of the gene (the primers and their sequences are presented in the Appendix). The sequence data assembled with the Sequencher program (Gene Codes Inc.) confirmed the presence of the S315T mutation and the absence of secondary mutations.
Susceptibility testing.
The susceptibilities of M. tuberculosis H37Rv and TBC3 to INH alone and INH in combination with plumbagin and clofazimine were determined by using the radiometric criteria of the BACTEC 460 system (Becton Dickinson, Sparks, Md.) (2, 25, 27, 36). All procedures were carried out in a biological safety cabinet inside a biosafety level 3 biocontainment facility. Studies involving combinations of drugs were carried out with weakly inhibitory concentrations of clofazimine and plumbagin, as determined by use of the radiometric criteria.
According to the instructions of the manufacturer (S. H. Siddiqi, BACTEC 460TB system, product and procedure manual, 1995, Becton Dickinson, Sparks, Md.), a suspension of an actively growing culture was made in water, and 0.1 ml was transferred to a BACTEC 12B bottle. These bottles were incubated until the appropriate growth index (GI) was obtained, after which 0.1-ml aliquots were removed and transferred to fresh BACTEC 12B bottles containing drugs. The bottles were incubated at 37°C and analyzed daily until the GI of the growth control diluted 1:100 was
30. Resistance was determined by comparing the change in GI over that of the previous day (
GI) between the control vial (GIcontrol) and the vials containing drugs (GIdrugs). The results are interpreted as follows: if
GIcontrol is >
GIdrug, the strain is referred to as "susceptible"; if
GIcontrol is <
GIdrug, the strain is referred to as "resistant"; and if
GIcontrol is equal to
GIdrug, the strain is referred to as "intermediate."
The MIC, determined by the procedure recommended by the manufacturers of the BACTEC 460 radiometric system, was defined as the lowest concentration of drug for which the GI of the drug-containing vial was less than the GI of the control diluted 1:100, obtained from measurements on the day when the GI of the control vial was
30, and corresponds to the daily concentration that resulted in >99% inhibition of the bacterial population growth. The IC50 corresponds to the concentration of drug that causes a 50% decrease in the GI. The IC50s of INH were obtained by least-squares fitting of the data to the Langmuir isotherm equation: B = 1/[1 + (IC50/[INH])], where B is equal to percent GI/100%.
The percent reduction of the IC50 of INH in the presence of clofazimine and plumbagin is determined by the following equation: {[IC50(INH) - IC50(X)]/IC50(INH)} x 100, where IC50(INH) and IC50(X) represent the IC50s of INH in the absence and presence of plumbagin or clofazimine, respectively.
The relative error was calculated by applying the basic theory of error: [IC50(X)/IC50(INH)] x {[
IC50(INH)/IC50(INH)] + [
IC50(X)/IC50(X)]}, where
IC50(INH) represents the error of determination of the IC50 of INH, and
IC50(X) is the error of determination of the IC50 of INH in the presence of plumbagin or clofazimine.

RESULTS
The effect of the superoxide-generating compounds plumbagin
and clofazimine on the activity of INH against
M. tuberculosis strains H37Rv and TBC3 was assessed by use of the BACTEC radiometric
criteria.

GI values for cultures of these strains in the presence
of INH alone were determined. The range of INH concentrations
chosen allows accurate determination of the MIC of INH for a
strain with wild-type
katG (strain H37Rv) and a strain with
katG harboring the S315T mutation (strain TBC3) (Fig.
1). The
MIC of INH for TBC3 was 5 µg/ml, 200-fold higher than
the MIC for H37Rv (0.025 µg/ml), confirming the efficacy
of the S315T mutation in conferring resistance to INH (
12,
13).
It should be noted that TBC3 is not an isogenic mutant of H37Rv.
Therefore, genotypic differences other than the S315T mutation
that could contribute to the increased MIC cannot be excluded.
The susceptibilities of H37Rv and TBC3 to clofazimine and plumbagin
alone were determined as well (Fig.
2). For both strains, the
MIC of clofazimine was >0.1 µg/ml but

0.2 µg/ml,
but a decrease in GI on day 7 was observed with clofazimine
at concentrations

0.1 µg/ml. This is in
agreement with previous studies, which showed a MIC of 0.12
µg/ml (
15,
28,
39). A concentration of 0.1 µg of
clofazimine per ml was therefore chosen as the subinhibitory
concentration to be used in combination with INH (see below).
Plumbagin also caused a decline in the GI values for both strains,
with noticeable decreases in the GI values at 10 to 20 µM.
TBC3 appeared to be slightly more sensitive to plumbagin, with
a slight (

30%) decline in the GI value by day 7 in the presence
of 10 µM plumbagin, whereas for H37Rv, 20 µM plumbagin
led to a similar, modest decrease in the GI value (Fig.
2).
As a result, the subinhibitory concentrations of plumbagin were
chosen to be 20 µM for H37Rv and 10 µM for TBC3.
The influences of subinhibitory concentrations of clofazimine
and plumbagin on susceptibility to INH were assessed by analysis
with the BACTEC system. Both compounds led to significant increases
in the susceptibility of wild-type strain H37Rv to INH (Fig.
3; Table
1). The MIC of INH decreased from 0.025 µg/ml
(with INH alone) to 0.012 µg/ml in the presence of 0.1
µg of clofazimine per ml and to 0.008 µg/ml in the
presence of 20 µM plumbagin (Table
1). Susceptibility
was also assessed by estimating the IC
50 of INH (Fig.
3A). The
IC
50, being the concentration of drug that causes a 50% decrease
in GI, is a more sensitive measure of the effects of these agents
than the MIC, which is the lowest concentration of drug that
results in a >99% decrease in cell growth. IC
50s were determined
by a least-squares fit of the data presented in Fig.
3, as described
in Materials and Methods. The IC
50 of INH was found to be 0.015
± 0.007 µg/ml (Fig.
3A, top), decreasing twofold
(to 0.0068 ± 0.0015 µg/ml) in the presence of 20
µM plumbagin (Fig.
3A, middle) and decreasing about 30%
(to 0.0099 ± 0.0026 µg/ml) in the presence of 0.1
µg of clofazimine per ml (Fig.
3A, bottom).
View this table:
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TABLE 1. MICs of INH used alone and in combination with plumbagin or clofazimine for M. tuberculosis strains H37Rv and TBC3
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The activity of INH alone or in combination with plumbagin (10
µM) or clofazimine (0.1 µg/ml) against TBC3 was
also investigated (Table
1; Fig.
3B). Both the MIC and the IC
50 of INH also appeared to decrease in the presence of these compounds.
With INH alone, the IC
50 was 2.1 ± 0.7 µg/ml, whereas
in the presence of plumbagin or clofazimine, the IC
50s were
1.3 ± 0.5 and 1.5 ± 1.2 µg/ml, respectively.
Compared to the reductions in the IC
50s of INH in combination
with plumbagin or clofazimine for strain H37Rv (55 and 34%,
respectively), the reductions in the IC
50s for TBC3 were lower.
For TBC3, the corresponding decreases were 38 and 28% (Fig.
3C).

DISCUSSION
Although a role for KatG in mediating INH activation is firmly
established, the mechanism of activation and the chemical nature
of the activated product are still unresolved. Initially described
as a catalase-peroxidase on the basis of the homology of its
amino acid sequence to that of the
Escherichia coli hydroperoxidase
I enzyme (
51), the enzyme has subsequently been shown to exhibit
a number of different catalytic activities. Three of these,
the catalase, peroxidase, and Mn
2+-dependent peroxidase activities,
share a common mechanism in which a hydroperoxide substrate
(e.g., H
2O
2 and
tert-butylhydroperoxide) oxidizes the Fe
3+ form
of the enzyme and forms an intermediate, compound I, which is
2 equivalents more oxidized than the resting enzyme. Compound
I, in turn, oxidizes a second substrate (e.g., INH), returning
the enzyme to the resting ferric state. The initial hypothesis
that the S315T mutation might confer resistance to
M. tuberculosis by affecting the catalase-peroxidase mechanism was tested by
comparing these activities for recombinant forms of the wild-type
and S315T enzymes (
31,
44,
45). These studies demonstrated that
the catalytic efficiency of KatG(S315T) is comparable to or
only slightly lower than the catalytic efficiency of the wild-type
enzyme for all three activities and does not correlate with
the ca. 200-fold difference in the MICs of INH for strains carrying
wild-type versus S315T
katG alleles, as measured in this and
other studies (
12,
13,
51). It has been shown that KatG-mediated
INH activation is probably not by direct peroxidation, as the
enzyme catalyzes INH oxidation in the absence of peroxide (
17).
An alternative mechanism for KatG-dependent INH turnover, in
which dioxygen is used as the oxidant, has gained attention
in recent years (
16-
18,
44). The mechanism for this reaction
is not completely understood but is thought to proceed in a
manner analogous to those for cytochromes P450. In this reaction,
dioxygen binds to the Fe
2+ form of KatG to form an oxyferrous
intermediate, which goes on to form a compound I-type species
after an additional redox reaction (
16-
20,
43). The oxyferrous
enzyme is a resonance form of the ferric-superoxo enzyme. Consequently,
the oxyferrous intermediate can also form by reaction of superoxide
anion with the Fe
3+ form of KatG (Fig.
4) (
41). On the basis
of the observation that KatG-dependent activation of INH generates
reactive oxygen species (
16,
33-
35), it has been hypothesized
that superoxide, formed via a one-electron reduction of dioxygen
concomitant with INH oxidation, can bind to the ferric heme
to form oxyferrous KatG and bring about further INH oxidation
and activation. Support for the physiological relevance of this
mechanism was provided by Wang et al. (
41), who showed that
the superoxide generator plumbagin resulted in an increase in
the bacteriostatic activity of INH against
M. smegmatis, a strain
normally resistant to INH. Other supporting experiments have
shown that KatG(S315T) has a reduced ability to oxidize INH
to isonicotinic acid when superoxide is used as the oxidant
(
44).
In this work, the role of superoxide anion in INH oxidation
in vivo was investigated by radiometric analysis of INH susceptibility
in the presence versus the absence of plumbagin and clofazimine.
Plumbagin is a known redox cycling agent expected to increase
intracellular superoxide concentrations (
8,
10,
41). The precise
mechanism of action of clofazimine is unknown, but it has been
suggested that it generates intracellular hydrogen peroxide
and superoxide (
15,
28,
29,
39). Clofazimine has been used for
the treatment of leprosy and has excellent in vitro inhibitory
activity against
M. avium-M. intracellulare complex strains,
with MICs that range from 0.1 to 5 µg/ml. The drug also
has potent in vitro activity against
M. tuberculosis, but there
is little or no information on its in vivo activity (
11,
14,
42).
The M. tuberculosis strain carrying the wild-type katG allele, strain H37Rv, exhibited increased susceptibility to INH when INH was used in combination with either plumbagin or clofazimine, as evidenced by a decrease in both the IC50s and the MICs of INH in the presence of these reagents. Hence, a superoxide-dependent mechanism appears to be important for KatG-mediated INH activation in this strain. KatG(S315T) also appears to utilize superoxide to activate INH, as evidenced by the fact that INH turnover by the purified enzyme is completely abolished in the presence of a catalytic quantity of superoxide dismutase (SOD) (44). Indeed, although the potency of INH was increased by a putative increase in superoxide production by plumbagin and clofazimine in INH-resistant strain TBC3, our data indicate that the katG S315T mutation attenuates this activation. Thus, KatG-mediated INH oxidative activation is superoxide dependent in M. tuberculosis and the S315T mutation may confer an INH resistance phenotype through a reduced activity toward superoxide. Although the results implicate superoxide potentiation of INH toxicity in both strains, H37Rv appeared to be more sensitive to increased levels of superoxide than TBC3. The hypothesis that superoxide participates in the KatG-mediated INH oxidation is intriguing because M. tuberculosis contains both ferric and Cu,Zn SODs. Superoxide-dependent activation may be possible only because all of the Cu,Zn SOD and 76% of the ferric SOD are exported from the cell, presumably to act as extracellular defenses against the host respiratory burst (7, 9, 48).
The potential chemical implications of these findings are intriguing. It is possible that clofazimine in combination with INH may result in synergistic activity in vitro against M. tuberculosis. This synergistic activity may be more for the wild-type M. tuberculosis strain than for strains harboring the katG S315T mutation. Further animal and human studies are required to validate these assumptions.

APPENDIX
The following primers were used for sequencing: KatG 5', CCG
ACA CTT CGC GAT CAC ATC CGT GAT CAC AGC CC; KatG 2, ATG ACC
ACC TCG CAG CCG; KatG 3, GGC TTC GGC CGG GTC GAC; KatG 4, GTC
GGC CCC GAA CCC GAG; KatG 5, CTG CGG GTG GAT CCG ATC; KatG 6,
CGT GGT AGC GAC AAG CGC; KatG 7, TTT GCC GTG CTG GAG CCC; KatG
8, AGT GGC AAG GTG AAG TGG; and KatG 2' reverse primer, CCG
TAG TCG GCG GGC CAC CAC GGC T.

ACKNOWLEDGMENTS
This work was supported by NIH grant AI47142.
We thank Slobodan Macura for comment on statistical interpretation of the data.

FOOTNOTES
* Corresponding author. Mailing address: Department of Biochemistry & Molecular Biology, Mayo Clinic & Foundation, 200 First St. S.W., Rochester, MN 55905. Phone: (507) 284-4743. Fax: (507) 266-9302. E-mail:
rusnak{at}mayo.edu.


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Antimicrobial Agents and Chemotherapy, September 2002, p. 2765-2771, Vol. 46, No. 9
0066-4804/02/$04.00+0 DOI: 10.1128/AAC.46.9.2765-2771.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
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