Previous Article | Next Article ![]()
Antimicrobial Agents and Chemotherapy, September 2002, p. 2784-2790, Vol. 46, No. 9
0066-4804/02/$04.00+0 DOI: 10.1128/AAC.46.9.2784-2790.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and National Food Biotechnology Centre, University College Cork, Cork, Ireland
Received 23 January 2002/ Returned for modification 29 March 2002/ Accepted 20 May 2002
|
|
|---|
lisK mutant (lacking the LisK histidine kinase sensor component) displays significantly enhanced resistance to the lantibiotic nisin, a greatly enhanced sensitivity to the cephalosporins, and a large reduction in the expression of three genes thought to encode a penicillin-binding protein, another histidine kinase (other than LisK), and a protein of unknown function. Confirmation of the role of LisRK was obtained when the response regulator, LisR, was overexpressed using both constitutive and inducible (nisin-controlled expression) systems. Under these conditions we observed a reversion of the
lisK mutant to wild-type growth kinetics in the presence of nisin. It was also found that overexpression of LisR complemented the reduced expression of two of the aforementioned genes. These results demonstrate the important role of LisRK in the response of L. monocytogenes to a number of antimicrobial agents. |
|
|---|
Our understanding of the mode of action of nisin, the only lantibiotic approved by the U.S. Food and Drug Administration for use as a food grade inhibitor, is increasing (3). It is now known that nisin functions, at least in part, by the formation of pores in the bacterial cell membrane, with the interaction being largely dependent on the type of lipids present and, most importantly, the charge carried by those lipids (2, 11, 26). Pore formation is facilitated by the binding of nisin to lipid II, a membrane-bound peptidoglycan precursor, which is thought to function as a docking molecule rather than as a receptor. In addition, the binding of nisin to lipid II is responsible for a secondary mode of action, i.e., inhibition of cell wall synthesis (45). Thus nisin inhibits bacterial growth by a combination of these two mechanisms. Despite the extent of this knowledge the role of host genes in determining nisin sensitivity and resistance is less clear.
In vivo, i.e., in infection by Listeria, ampicillin, alone or in combination with gentamicin, remains the treatment of choice (43). However, the high level of innate resistance to cephalosporin antibiotics that Listeria possesses may be especially significant as members of this family of drugs are used most frequently for sepsis due to unknown causes. While cephalosporins were found to be efficient inhibitors of penicillin-binding protein 1 (PBP1), -2, and -4 in L. monocytogenes, which are completely blocked at concentrations well below the MIC, the innate resistance to cephalosporins is thought to be due to their lack of affinity for PBP3, the primary lethal target for ß-lactams in the species (18, 44).
Here we report that LisRK, an L. monocytogenes two-component signal transduction system which we previously identified and which has been found to play a role in acid, ethanol, and oxidative stress and in murine virulence (5, 20), also plays a major role in the retardation of the growth of Listeria in the presence of nisin and in the innate cephalosporin resistance of this pathogen. In addition, for the first time, genes regulated by LisRK have been identified. It was found that overexpression of the gene encoding the response regulator component of the system, lisR, could complement a number of the phenotypic consequences of mutating lisK (the gene encoding the histidine kinase component) as well as restoring expression of two of the three regulated genes.
|
|
|---|
lisK is a mutant from which a portion of the histidine kinase-encoding gene, lisK, has been deleted by splicing by overlap extension (SOEing) PCR (5). The culture medium used was tryptone soy agar or tryptone soy broth (Oxoid, Basingstoke, Hampshire, England) supplemented with 0.6% yeast extract (Difco) (TSA-YE or TSB-YE) or brain heart infusion (BHI) agar or broth (Oxoid). Plasmid pKSV7, used for SOEing PCR, was a kind gift from Kathryn Boor, Cornell University, Ithaca, N.Y. Plasmids pNZ8048 (8) and pNZ9530 (21) were gifts from Michiel Kleerebezem, NIZO, Ede, The Netherlands. Plasmid pNZ44 (29) was a gift from Stephen McGrath, University College Cork, Cork, Ireland.
Growth in the presence of nisin.
The rates of growth of L. monocytogenes LO28 and LO28
lisK in the presence of different levels of nisin (2% inoculum in TSB-YE containing 50, 100, 150, 200, or 300 µg of nisin powder [Sigma, St. Louis, Mo.]/ml) were compared by monitoring optical density at 600 nm (OD600) with a Spectra Max 340 spectrophotometer (Molecular Devices, Sunnyvale, Calif.) over a 20-h period.
Antibiotic assays.
Assays to determine the sensitivities of LO28 and LO28
lisK to a wide range of antibiotics were carried out by agar diffusion. Overnight cultures were diluted to 106 CFU/ml and swabbed onto TSA-YE. Commercially purchased disks (6 mm in diameter; Oxoid) containing 30 µg (unless otherwise stated) of the antibiotics to be studied were then placed on the surfaces of agar plates. Following overnight incubation of the plates at 37°C, the diameters of the zones of bacterial growth inhibition surrounding the filter disks were measured. The relative susceptibilities of different strains to the various antibiotics tested were correlated with the sizes of the zones of inhibition, with increased zone size reflecting increased susceptibility. Initially the antibiotics assayed were cefotaxime, cefuroxime, vancomycin, erythromycin, kanamycin, fosfomycin (50 µg), minocycline, polymyxin B (300 µg), streptomycin (25 µg), fusidic acid (10 µg), oxytetracycline, penicillin (10 µg), clindamycin (10 µg), spectinomycin (25 µg), ampicillin (25 µg), novobiocin, rifampin, nalidixic acid, gentamicin, colistin sulfate (25 µg), chloramphenicol (CAM), and tetracycline.
In addition to this assay, designed to compare antibiotic susceptibilities in general, further studies involved disks containing antibiotics of the cephalosporin family. These were cefuroxime, ceftazidime, cefaclor, cephalothin, cefoxitin, ceftriaxone, cefotetan, cefoperazone, cephradine, cephalexin, and cefotaxime (all 30 µg).
Implementation of the nisin-controlled expression (NICE) system in L. monocytogenes LO28
lisK.
A strategy to replace the hemolysin gene, hly, on the L. monocytogenes chromosome with the nisRK genes was devised. Primers were designed to amplify the chromosomal regions flanking the hly gene (primers HSOEA, -B, -C, and -D; Table 1). The resultant A-B and C-D fragments were spliced by overlap extension PCR (19) using primers HSOEA and -D to create a single A-D fragment, representing the region surrounding hly but with the gene precisely removed. This fragment was subsequently cloned in temperature-sensitive plasmid pKSV7 (41). Since primers B and C have built-in restriction sites, we were able to clone the nisRK operon (amplified, by using primers nisRF and nisKB, from pNZ9530 [21]) into the location formerly occupied by hly. This plasmid construct, pCPL-53, was electroporated into L. monocytogenes LO28
lisK, and transformants were selected on BHI agar with 10 µg of CAM/ml (BHI/CAM). Chromosomal integration of the plasmid at 41°C was selected by serial passage of a transformant in prewarmed BHI/CAM broth and streaking onto prewarmed BHI/CAM agar. Plasmid excision was accomplished by continuous passage in BHI at 30°C, and clones in which nisRK had replaced hly on the chromosome were identified by plating them onto blood agar plates at 30°C. Replica plating of nonhemolytic colonies onto BHI and BHI/CAM at 30°C identified cured derivatives. PCR and sequencing analysis of one such strain confirmed that the nisRK operon had replaced the hly gene. This strain was designated LO28
lisK-NICE.
|
View this table: [in a new window] |
TABLE 1. PCR primers used in this study.
|
lisK-NICE(pNZ8048-lisR). pNZ8048 was also introduced into the LO28
lisK-NICE background to create LO28
lisK-NICE(pNZ8048). As an alternative to inducible overexpression, lisR (amplified by primer pair NZlisRF and NZlisRB) was also cloned into plasmid pNZ44, a derivative of pNZ8048 in which the Pnis promoter was replaced by a constitutive P44 promoter (29), resulting in the creation of LO28
lisK(pNZ44-lisR). LO28
lisK(pNZ44) was also created to serve as a control for subsequent experiments. RT-PCR. RNA isolation and reverse transcription-PCR (RT-PCR) were carried out as described previously (6). RNA was isolated from overnight cultures (constitutive overexpression system) or following nisin induction (inducible overexpression system). For induction with nisin cultures were grown to an OD600 of 0.2 and preinduced with 4.5 µg of nisin powder/ml for 1 h, followed by induction with 45 µg of nisin powder/ml (a concentration at which there is no difference in the nisin sensitivities of the two strains) for 30 min and then isolation of RNA. In all cases cDNA was amplified by PCR with specific primers and samples were taken at regular intervals and run on agarose gels. Primers for the 16S rRNA of L. monocytogenes LO28 were used as controls (36).
|
|
|---|
lisK mutant.
Because deletion of the L. monocytogenes histidine kinase-encoding gene, lisK, results in an altered response to environmental parameters (5), we examined the susceptibility of L. monocytogenes to the lantibiotic nisin. It was found that the levels of nisin required to inhibit growth of wild-type LO28 are high relative to those required to inhibit the growth of a number of other gram-positive bacteria (9). This is a feature of this strain which we have previously observed in relation to other bacteriocins such as lacticin 3147 and enterocin A (our unpublished data). Growth curves were carried out to determine whether deletion of lisK affected the response to nisin. In the absence of nisin the growth rates of the parent and mutant strains were identical, but in the presence of increasing levels of nisin differences became apparent, primarily manifested as a significantly longer lag phase in wild-type LO28 (Fig. 1). This is most obvious when one observes that the lag period for LO28 in the presence of 300 µg of nisin/ml is 6 h longer than that for LO28
lisK (Fig. 1E). There is no difference in the growth rates once the lag phase has been exited (e.g., both are 0.046 U/h during logarithmic growth in the presence of 200 µg of nisin/ml). Therefore, the LisK mutation results in a culture that is able to rapidly initiate growth in the presence of nisin, whereas the parent apparently needs a significant period in which to adapt to the presence of the inhibitor. We speculate that, during prior growth in the absence of nisin, the LisRK system plays a role in creating a particular cell envelope composition that renders the cell more susceptible to nisin (and also alters its response to ethanol, low pH, and hydrogen peroxide [5, 20]). In the absence of LisK, the cell must presumably fail to sense an as yet unknown environmental parameter, resulting in an altered envelope composition that is manifested as rapidly initiated growth in the nisin assay.
![]() View larger version (19K): [in a new window] |
FIG. 1. Growth of LO28 lisK in the presence of antimicrobial agents. Shown is growth of LO28 (circles) and LO28 lisK (squares) in TSB-YE with 0 (A), 50 (B), 100 (C), 200 (D), and 300 (E) µg of nisin powder/ml. Growth was determined by using a Spectra Max 340 spectrophotometer (Molecular Devices) over a 20-h period. Error bars, standard deviations from the means of quadruplicate experiments.
|
lisK differed in their responses to other antimicrobial agents. An initial extensive study using a wide range of antibiotics (see Materials and Methods) revealed that only cefotaxime and cefuroxime differentiated significantly between the two strains (Table 2) though a slightly enhanced (though not statistically significant) sensitivity to ampicillin and penicillin was also observed. It was found that for the parent strain, LO28, the diameters of the zones surrounding the cefotaxime and cefuroxime disks were very small (16 and 15.4 mm, respectively). In contrast, for LO28
lisK the diameters extended to 26 and 26.4 mm, representing significant 63 and 71% increases in zone size for cefotaxime and cefuroxime, respectively. As a consequence of the dramatic nature of these findings, further antibiotic disk assays were performed using other antibiotics of the cephalosporin family (Table 2). While, as expected, it was observed that the LO28 background was, in general, more sensitive to narrow-spectrum cephalosporins (e.g., cephalothin, cefaclor, and cephradine), the most significant discovery was the greatly enhanced sensitivity of the LO28
lisK mutant in all cases (Table 2). Our observations are especially significant when one considers that, despite L. monocytogenes susceptibility to a wide range of antibiotics, it is resistant to the cephalosporins (18), a large and expanding family of drugs based on cephalosporin C which are frequently the initial choice for hospital treatment of bacterial infection resulting in fever due to unidentified organisms. |
View this table: [in a new window] |
TABLE 2. Cephalosporin resistance of LO28 and LO28 lisK
|
lisK. Significantly, it was found in all cases that the relative level of expression of these three genes was greatly reduced or eliminated in LO28
lisK (Fig. 2A). The gene encoding the putative PBP in strain 412 corresponds to the open reading frame designated lmo2229 in genome-sequenced strain L. monocytogenes EGD-e (13). This putative PBP shows highest homology to PBP2a of Streptococcus pneumoniae (16) and PBP1a of Bacillus subtilis (39), both of which are high-molecular-weight PBPs possessing both glycosyltransferase and transpeptidase domains. The gene encoding the histidine kinase corresponds to lmo1021 and shows homology with the yvqE gene of B. subtilis (23) and llkinD of Lactococcus lactis (34, 35) (genes encoding members of the NarQ/NarX subfamily). In each case the gene encoding the histidine kinase is located between a response regulator gene homolog (lmo1022, yvqC, or llrrD) and a gene encoding a protein of unknown function (lmo1020, yvqF, or tcdsorf1). While mutation of llkinD has not been achieved, it was found that the most significant trait associated with an llrrD mutant was an increased osmosensitivity. However, unlike lisK mutants, this mutant did not exhibit enhanced sensitivity to oxidative stress (35). The third gene fragment, originally designated fragment C, corresponds to lmo2487 and is homologous to B. subtilis yvlB, the predicted protein of which has not been assigned a function. While we have yet to ascertain what role, if any, these three genes play in the phenotypes associated with the lisK mutation, the variations in the levels of transcript and the observation that at least one other histidine kinase plays a role suggest that LisRK is involved in a complex regulatory pathway. The apparent inconsistency between our findings and those of Gravesen et al. (14) with regard to the relative increase or decrease in transcription of these genes may reflect the growth phases during which cells were studied, i.e., late exponential phase (OD600 = 0.6) and late stationary phase (overnight growth), respectively. Growth phase-dependent variations have previously been reported with respect to the acid resistance of the LO28
lisK mutant. We can, however, definitively state that alterations in the levels of these proteins are associated with nisin resistance and cephalosporin sensitivity.
![]() View larger version (43K): [in a new window] |
FIG. 2. (A and B) RT-PCRs to compare levels of transcripts for genes whose products show homology to histidine kinase (HK), a protein of unknown function (gene C), and a PBP in strains LO28 (L) and LO28 lisK ( K) (A) and LO28 lisK(pNZ44lisR) (+R) and LO28 lisK(pNZ44) (-R) (B). (C) Confirmation of the overexpression of lisR by RT-PCR using lisR-specific PCR primers to amplify cDNA templates of equal concentrations generated from LO28 lisKNICE(pNZ8048) or LO28 lisKNICE(pNZ8048-lisR) RNA following nisin induction. In all cases control PCR primers were used to ensure the complete removal of DNA from RNA preparations prior to reverse transcription and to ensure that levels of cDNA for samples that were to be compared were equal.
|
Implementation of the NICE system in L. monocytogenes LO28
lisK.
To confirm that the observed phenotypic and transcriptional changes associated with the deletion in lisK were linked to its interaction with the cognate LisR regulator (and not due to cross talk or a secondary undetected mutation in LO28
lisK), we designed a strategy to overexpress LisR in the LO28
lisK background. The rationale for this approach stems from the observation that in certain circumstances overexpression of a response regulator alone may mimic activation thereof (33). This phenomenon may be explained by the observation that a number of response regulators are capable of binding their target DNA when nonphosphorylated, though less efficiently than when phosphorylated (1, 7, 24). It may also be possible that the high stoichiometry of LisR allows some level of phosphorylation as a result of either cross talk or the possible contribution of another histidine kinase that specifically interacts with LisR (the existence of which has not been ruled out). Therefore, a system to allow overexpression of LisR was necessary to investigate whether excess LisR could complement the absence of LisK. In addition to the need for a very strong promoter it was desirable that the system also be inducible, in the hope that it might ultimately facilitate the identification of additional promoters controlled by LisRK by using a strategy analogous to that used by Soncini et al. to identify PhoPQ-regulated genes in Salmonella enterica serovar Typhimurium (42). Due to the paucity of controlled expression systems in Listeria and the extent to which it can overexpress proteins, the lactococcal NICE system was employed (8). The NICE system has the advantage of being extremely responsive to an external stimulus (nisin) and has been successfully used in a number of other gram-positive genera, including Leuconostoc and Lactobacillus (21, 38) and Streptococcus, Enterococcus, and Bacillus (9). It depends on the presence of a two-component signal transduction system (NisRK) which senses nisin in the external environment and stimulates transcription from the Pnis promoter. Although nisin is both the induction factor for the NICE system and one of the inhibitors under investigation in this study, because of the relative differences in concentration required for induction and for inhibition, we were able to utilize nisin as both inducer and challenge to determine whether overexpression of LisR can overcome the
lisK lesion.
Original applications of the NICE system used two plasmids, one with a nisA promoter and the relevant gene to be overexpressed and the second on which the nisRK regulatory genes were located in trans (9, 21). More-recent innovations involve either placing the nisRK genes on the host chromosome, allowing the subsequent use of a one-plasmid system (38), or placing both nisRK and the nisA promoter on a single plasmid (4). We used the former approach and introduced the nisRK genes onto the listerial chromosome, replacing the hemolysin (hly) gene and placing nisRK under the control of the hly promoter. This replacement did not impact on the level of resistance of the strain. This particular gene replacement strategy was chosen because transcription of hly in strain LO28 in vitro is constitutively high but can be further increased (by the addition of charcoal to the culture medium) or decreased (by a reduction in growth temperature from 37 to 20°C) if required (40). Second, this has the advantage of creating a much less virulent host with which to perform physiological assays. The strain resulting from this procedure, the construction of which is described in Materials and Methods, was designated LO28
lisK-NICE (Fig. 2B).
To overexpress LisR, the corresponding gene was cloned into pNZ8048 behind the Pnis promoter. The resulting plasmid, designated pNZ8048-lisR, was introduced into LO28
lisK-NICE. Plasmid pNZ8048 lacking an insert was also introduced into the same background for use as a negative control in subsequent experiments. To confirm that nisin induced overexpression of a lisR transcript, an RT-PCR comparing the relative quantities of lisR mRNA in the two backgrounds was performed (Fig. 2C). After 15 cycles it was apparent that the levels of lisR mRNA being produced, following induction by nisin (45 µg/ml), were much greater when pNZ8048-lisR, rather than pNZ8048, was present.
Complementation of the
lisK phenotype by overexpression of lisR.
To determine whether overexpressing lisR reversed the enhanced nisin resistance displayed by LO28
lisK, we compared the growth of LO28
lisK-NICE containing pNZ8048-lisR to that when it contained pNZ8048. The level of nisin required to affect the growth of the strains (greater than 100 µg/ml) was in excess of that required to induce the NICE system maximally (45 µg/ml), thus allowing the induction of lisR and the examination of the growth kinetics under nisin inhibition. The results confirmed that induction of lisR results in a reversion to nisin sensitivity, overcoming the
lisK mutation (Fig. 3). As in the parental strain, this sensitivity manifests itself as an increased lag period relative to that of LO28
lisK-NICE(pNZ8048), which is 6 h in the presence of 300 µg of nisin/ml (Fig. 3E). Overexpression of LisR by nisin was also found to result in a reversion to wild-type levels of ethanol sensitivity (data not shown) though a reversion to cephalosporin resistance was not apparent. For fear that the use of nisin was interfering with the ability of the NICE system to complement cephalosporin sensitivity, an alternative overexpression vector, pNZ44, was used. This vector is a derivative of pNZ8048 in which a constitutive P44 promoter replaces the inducible Pnis (29). It was found that LO28
lisK containing pNZ44-lisR exhibited a reversion to cephalosporin resistance, though the degree of reversion varied depending on the antibiotic used (Table 2). This system was also used to determine if the levels of the three genes associated with nisin resistance increased in response to LisR overexpression (Fig. 2B). It was found that, while increases in the levels of transcript corresponding to lmo2487 (gene C) and, to a much lesser extent, lmo2229 (PBP) were observed, no change in the level of lmo1021 (histidine kinase) was detected. The variation in the extent to which complementation of the cephalosporin sensitivity phenotype occurred may reflect either the involvement of an alternate response regulator that interacts with LisK or, more likely, variations in the affinity of LisR for the three promoters, analogous to the differential expression of genes within the regulon of the closely related CsrR response regulator in Streptococcus pyogenes (10, 31).
![]() View larger version (20K): [in a new window] |
FIG. 3. Complementation of the nisin resistance phenotype of LO28 lisK by using the NICE system. Growth of LO28 lisKNICE(pNZ8048) (squares) and LO28 lisKNICE(pNZ8048-lisR) (circles) in TSB-YE with 0 (A), 50 (B), 100 (C), 200 (D), and 300 (E) µg of nisin powder/ml. Growth was determined by using a Spectra Max 340 spectrophotometer (Molecular Devices) over a 20-h period. Error bars, standard deviations from the means of quadruplicate experiments.
|
In conclusion, we have shown that the LisRK two-component signal transduction system, in addition to playing a role in the response of bacteria to acid, ethanol, hydrogen peroxide, and in vivo stresses, has a major role in the growth of this potentially lethal food pathogen in the presence of lantibiotic bacteriocin and in determining the sensitivity to antibiotics within the cephalosporin family. A link between nisin resistance and cephalosporin sensitivity, previously observed by Gravesen et al. (14), in spontaneous mutants has been confirmed, three genes associated with this phenotype have been shown to controlled through LisK, and it has been shown that complete or partial complementation of the phenotypes displayed by LO28
lisK can be reversed by overexpressing lisR.
Finally, in the process of determining the role of LisRK in nisin resistance, we have also confirmed that the NICE system functions in L. monocytogenes. The importance of this finding stems from the lack of inducible gene expression systems for Listeria and the adaptability of the NICE system, which permits precise regulation of expression levels and which can facilitate the production of very high levels of recombinant proteins. The relatively high nisin resistance of strain LO28 makes it especially suitable for use with this system to facilitate the identification of the LisRK regulon and potentially genes controlled by other transcriptional regulators in Listeria. It should also prove a useful tool for others interested in expressing foreign proteins in L. monocytogenes.
This project was funded by the Irish Government under the National Development Plan 2000-2006.
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2010 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»