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Antimicrobial Agents and Chemotherapy, September 2002, p. 2804-2810, Vol. 46, No. 9
0066-4804/02/$04.00+0 DOI: 10.1128/AAC.46.9.2804-2810.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Unit of Mycobacteriology, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, P-1349-008 Lisbon,1 Department of Microbiology, Faculdade de Farmácia da Universidade de Lisboa, P-1649-019 Lisbon, Portugal,2 MRC Centre for Molecular and Cellular Biology, Department of Medical Biochemistry, University of Stellenbosch, Stellenbosch, South Africa3
Received 2 January 2002/ Returned for modification 6 February 2002/ Accepted 28 May 2002
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Resistance to INH is not totally accounted for by the mechanisms described above, since recent evidence shows that resistance to INH in Mycobacterium smegmatis can also be mediated by an energy-dependent efflux pump (5). Efflux pumps that render an organism resistant to one or more antibiotics have been identified in all bacteria that have been subjected to such analyses, including mycobacteria (16, 22). These pumps are normally present in the plasma membrane of the bacterium and afford protection from toxic substances that are recognized as substrates by the pump. Susceptibility to a given antibiotic that is a coincidental substrate for a pump may be considered the result of overcoming the effectiveness of the pump due to its limited number of units. Because among the isolates of one strain there are members that have different quantitative susceptibilities to a given antibiotic attributed to genotypic variation (20), it is possible that these differences may be due to a variation in the number of existing efflux pumps. Furthermore, these variations may be due to a mechanism that controls the number of such pump units. The demonstration of antibiotic efflux pumps in mycobacteria has raised the obvious question of whether these or any antibiotic efflux pump is subject to an increase in their number, which in turn renders the organism increasingly resistant to the antibiotic. To this extent we have attempted and succeeded to induce INH sensitivity in M. tuberculosis strains increasingly resistant to INH by mechanisms that do not involve the selection of mutations that bestow resistance to this antibiotic. The mechanism by which this induced resistance to INH takes place might involve an efflux pump.
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Microorganisms. M. tuberculosis H37Rv (strain ATCC 27294 from the American Type Culture Collection ([ATCC]) and eight clinical isolates of M. tuberculosis, the latter of which were isolated from untreated patients and previously shown to be susceptible to INH, rifampin, streptomycin, and ethambutol by the BACTEC 460-TB system (S. Siddiqi, BACTEC TB system, product and procedure manual, 1980, Becton Dickinson Diagnostic Instrument Systems, Towson, Md.), were selected for this study and were designated INH-susceptible strains.
Drug susceptibility assays by the BACTEC 460-TB radiometric proportion method and determination of INH MICs by the broth (BACTEC) radiometric method and the agar dilution method. The indirect drug susceptibility assay (the BACTEC 460-TB radiometric proportion method) was conducted with the respective desired final concentrations of INH (0.1 mg/liter), rifampin (2 mg/liter), streptomycin (6 mg/liter), and ethambutol (7.5 mg/liter) by the procedure and with the interpretive criteria recommended by the manufacturer (21; S. Siddiqi, BACTEC TB system, product and procedure manual, Becton Dickinson Diagnostic Instrument Systems) and by Rastogi et al. (19). Absolute control vials (with no drug) and drug-containing vials were inoculated with approximately 105 to 106 CFU of an organism identified as M. tuberculosis by rRNA-DNA probe hybridization (AccuProbe; Gen-Probe-BioMerieux, Lyon, France) (9). A separate 1/100 dilution of each bacterial suspension served as the proportional control. All vials were incubated at 37°C and were evaluated daily until the growth index of the proportional control reached 30, which was within 4 to 12 days.
The MIC of INH was determined for the H37Rv (ATCC 27294) control strain and clinical strains by the modified broth radiometric method of Lee and Heifets (11; S. Siddiqi, BACTEC TB system, product and procedure manual, Becton Dickinson Diagnostic Instrument Systems). The MIC was defined as the lowest INH concentration that completely inhibited the generation of 14CO2 after an incubation period of 12 days.
The determination of the INH MIC by the agar dilution method was performed as described previously (6, 8).
The simultaneous use of Middlebrook 7H11 solid medium for susceptibility testing and MIC determination was necessary because the agar dilution method, the "gold standard" in mycobacteriology (6, 8), affords accurate determination of the percentage of resistant bacteria in the population present in the broth used by the radiometric method as well as for the isolation of single colonies. Both methods yielded comparable MICs.
Inducement of INH resistance, reversal of resistance, and repetition of the cycle of INH-induced resistance. The vials that were used to determine the susceptibilities of the clinical and INH-susceptible (ATCC 27294) strains to INH (0.1 mg/liter) and that would normally be discarded after a maximum of 12 days (S. Siddiqi, BACTEC TB system, product and procedure manual, Becton Dickinson Diagnostic Instrument Systems) were retained in the incubator for an additional period of time. By the end of 28 days, all of the vials yielded visible and radiometric evidence of growth. The contents of these vials were identified as M. tuberculosis by conventional biochemical methods (6) and rRNA-DNA probe hybridization and were evaluated for INH susceptibility by the BACTEC 460-TB and solid medium methods. IS6110-based restriction fragment length polymorphism (RFLP) analysis (IS6110-RFLP analysis) (17, 25) confirmed that each of the bacterial populations that could now grow in the presence of 0.1 mg of INH per liter was identical to the initial parent population. The MIC of INH for each of these strains was determined and compared to that of the initial respective parent, and aliquots of 0.1 ml from growing cultures containing a concentration of INH just below the MIC were inoculated into fresh BACTEC 12B vials containing the lowest INH concentration that had completely inhibited the growth of the previous population. At the end of 10 to 28 days these vials showed evidence of maximum growth, and a new INH susceptibility test and MIC determination confirmed their capacity to grow in the presence of higher concentrations of INH that had previously been shown to inhibit growth. This sequential process was conducted for five additional consecutive passages, with each passage containing a stepwise increase in the concentration of INH corresponding to the lowest concentration that had inhibited growth in the previous passage. This process was conducted in parallel with solid medium. The latter method provided colonies that could be assayed for identity and antibiotic susceptibility and colonies that could be assayed by other procedures to ensure that what was being observed with liquid medium was also taking place in solid medium.
This phase of the study consumed an average of 230 days (see Fig. 2) with the radiometric broth medium and yielded M. tuberculosis isolates that were capable of growing in medium containing a concentration of INH as high as 20 mg/liter.
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FIG. 2. Time course of induced INH resistance and reversion of the H37Rv (ATCC 27294) reference strain. Culture of INH-susceptible isolates (time zero; MIC, 0.03 mg/liter) in INH-containing medium (0.1 mg/liter) incubated beyond the antibiotic susceptibility assay time frame (4 to 12 days) resulted in evident growth after 28 days. The ability to grow in 0.1 mg of INH per liter was confirmed, the MICs were determined, and the cells were designated as having induced INH resistance (MIC, 0.2 mg/liter) at IL1. These cells were then exposed to INH at concentrations that corresponded to the MIC for the previous passage phase, and after 21 days the growing cells were then tested as described above and the cells were designated as having induced INH resistance (MIC, 0.5 mg/liter) at IL2. The process was continued to IL7, at which time the cells were able to grow in the presence of 20 mg of INH per liter (MIC, 40 mg/liter). Cells at IL7 were repeatedly transferred to drug-free medium. The MICs were determined between passages, and the MICs gradually decreased (IL8, IL9, and IL10), reaching the MIC for the initial parent strain (0.06 mg/liter) at IL11. The cells present in the culture at IL11 served as a source for the repeat cycle of induced resistance to INH (data not shown).
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After the sixth passage (when the strains were growing in INH at 20 mg/liter), each derived INH-resistant M. tuberculosis isolate obtained from the initially INH-susceptible strains was subsequently transferred to INH-free medium and incubated for an extended period of 28 days. An aliquot from each vial was then transferred to fresh INH-free medium, and these vials were reincubated for the same extended period; three more consecutive passages in drug-free medium were conducted for each derived strain. The INH MIC for each strain was determined after each passage in drug-free medium. After the fourth passage the susceptibility testing criteria for INH susceptibility were verified by procedures conducted with broth and solid media.
Aliquots from the last passage in drug-free medium were subjected to the same antibiotic susceptibility assay described above for the respective initial strains; i.e., they were allowed to remain in the incubator well past their period of antibiotic susceptibility until evidence of growth. The contents were subjected to the same procedures used for the eventual inducement of high-level resistance to INH described above.
IS6110-RFLP analysis and analysis of katG mutations by PCR-RFLP analysis. Before and after the inducement of resistance to INH, strain H37Rv (ATCC 27294) and the clinical strains were subjected to IS6110-RFLP analysis (17, 25) to determine possible contamination or to detect an initial mixed culture, as described previously (20).
Determination of the most common point mutation in katG, consistently found at position 315 (serine to threonine [S315
T]) in clinical isolates with high-level INH resistance, was conducted with the initial ATCC control strain, representatives of the initial INH-susceptible clinical strains, representatives of the progeny in which INH resistance had been induced and obtained after the sixth consecutive passage in INH, and representatives obtained from the last (fourth) consecutive passage in the absence of INH, as described previously (24, 26). Two mutants previously found to have katG mutations were similarly analyzed and served as positive controls.
MICs of putative inhibitors of efflux pumps for the strains of M. tuberculosis used in this study and effects of the inhibitors on induced INH resistance. The MICs of CPZ, verapamil, and reserpine for strain ATTC 27294 and the clinical strains of M. tuberculosis were determined with the BACTEC 460-TB system described above, except that INH was replaced by separate various concentrations of known inhibitors of efflux pumps: CPZ at 1.25 to 40 mg/liter, verapamil at 8 to 5,000 mg/liter, and reserpine at 0.01 to 160 mg/liter.
These inhibitors of efflux pumps were separately added to cultures at concentrations that were previously shown to have no effect on the growth of the initial ATCC and clinical strains of M. tuberculosis used in this study. The concentrations of these compounds used in combination with INH, as well as the concentration of INH, in cultures containing representatives of the initially INH-susceptible strains, representatives from cultures induced to have high levels of resistance to INH, or representatives from cultures whose progeny had reverted in drug-free medium to their initial susceptibility to INH are described in the figure legends and in the tables, where appropriate.
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FIG. 1. Appearance of INH resistance after completion of INH susceptibility assay. The growth curves of the H37Rv (ATCC 27294) reference strain () and the eight clinical INH-susceptible strains ( ) in BACTEC 12B vials containing 0.1 mg of INH per liter and the H37Rv (ATCC 27294) reference strain ( ) and the eight clinical INH-susceptible strains ( ) grown in drug-free medium as controls are shown. The results for the eight clinical strains are recorded at 5-day intervals, with each point being the mean ± standard deviation of the daily readings. All strains were initially susceptible to 0.1 mg of INH per liter, as evidenced by the results at the end of the INH susceptibility assay period (maximum, 12 days). Incubation for a maximum of an additional 28 days yielded a growth index that was indicative of resistance to INH.
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TABLE 1. Characteristics of contents of INH-containing BACTEC 12B vialsa
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Aliquots of these cultures with INH-induced resistance at IL1 were transferred to fresh BACTEC 12B vials containing a concentration of INH that corresponded to the new MIC (0.2 mg/liter). These cultures reached full growth by the end of 10 to 21 days and were subjected to INH MIC determination, after which time they served as sources for the next passage in medium containing a concentration of INH that corresponded to that which was shown to be the new INH MIC for the strains in the previous passage. These organisms, referred to as isolates with INH-induced resistance at the second induction level (IL2), were assayed for determination of the INH MIC (the INH MIC at IL2 was then 0.5 mg/liter) and were used as sources for five additional serial passages, with each succeeding passage containing a concentration of INH that corresponded to the previous MIC for the strain with INH-induced resistance at IL2, IL3, IL4, IL5, IL6, and IL7. These passages were also conducted with solid medium containing equivalent concentrations of INH, and the plates were evaluated for the numbers of CFU. Figure 2 describes the increases in the INH MICs for each of the induction levels when the ATCC strain was subjected to stepwise increases in the concentrations of INH, as described above. This procedure yielded M. tuberculosis isolates that were capable of growing in liquid or solid medium containing 20.0 mg of INH per liter. All eight clinical strains were subjected to the same procedures used for the induction of high-level resistance to INH, and similar results were obtained, with little difference in the amount of time required for the manifestation of induced resistance at each sequential level of induced resistance being detected (data not shown due to limitation of space).
Reversal of INH resistance. Although the contents of each culture at the conclusion of each passage phase were shown by the use of identification probes to be M. tuberculosis (Table 1), there was the real possibility that the increasing level of resistance to INH was due to the selection of mutants containing any one of the known mutations associated with resistance to INH. Since mutations remain true when the isolates are transferred to drug-free medium, aliquots were taken from cultures of isolates that were growing in 20.0 mg of INH per liter (induced resistance to INH at IL7) and transferred to drug-free medium, after which time serial passages were conducted in drug-free medium. Between serial passages, an assay for determination of the INH MIC was conducted. As shown in Fig. 2, the MICs for isolates from each successive passage (IL8, IL9, and IL10) continued to decrease, eventually reaching that for the initial parent strain (average MIC at IL11, 0.06 mg/liter). The latter progeny that by this time were fully INH susceptible were subjected to prolonged incubation in INH, as were their original parents, and the cycle of induced resistance to INH was again successfully repeated (Fig. 2).
The induction of INH resistance and its reversibility with repeated passage in drug-free medium, followed by the repeat of the INH resistance induction cycle, argue against the involvement of any chromosomal mutation that may have been selected or the introduction of a contaminant during the manipulations described above. Nevertheless, to eliminate these two possibilities, the probability of which are low, representative strains from each phase of the cycle (susceptible strains and strains with induced resistance) were subjected to IS6110-RFLP analysis and katG mutation identification analysis. The IS6110-RFLP pattern remained identical for each representative throughout the cycle, thus eliminating any chance that the appearance of an increased level of resistance was due to the introduction of a contaminant or to the testing of a specimen of a mixed type (data not shown). The appearance of INH resistance is not due to the selection of katG mutants, which are known to be the most prevalently associated with high-level resistance to INH as a result of the S315
T mutation, since all of the PCR-RFLP analyses that detect this point mutation were negative for all strains tested (data not shown) (23, 26).
Reduction of levels of INH resistance by an efflux pump inhibitor. The induction of high-level resistance to INH may be due to the activation or induction of an efflux pump mechanism(s). For this purpose INH-susceptible reference strain M. tuberculosis H37Rv (ATCC 27294) and isolates with INH-induced resistance at IL7 (resistant to INH at 20.0 mg/liter [MIC, 40 mg/liter]) were evaluated for the presence of an efflux pump by the use of known inhibitors of bacterial efflux pumps such as CPZ (14), verapamil, and reserpine (5, 16, 22). The existence of an efflux pump that renders a bacterium resistant to a given antibiotic is shown by the ability of known inhibitors of efflux pumps to reduce the level of resistance to the antibiotic. The concentration selected for an inhibitor of an efflux pump must be one that has a nominal effect on the growth of the bacterium itself so that the effects related to the action of the pump on the activity of a given antibiotic can be isolated. Table 2 identifies the highest concentrations of CPZ, verapamil, and reserpine that had no effect on the initial INH-susceptible ATCC 27294 reference strain and the clinical strains used in this study, as well as the concentrations that correspond to their MICs. Whereas subinhibitory concentrations of CPZ or verapamil did not affect the ability of the cells with induced INH resistance at IL7 to grow in the presence of 20 mg of INH per liter (data not shown), reserpine at 20 mg/liter reduced the ability of all of the strains at IL7 to grow in the presence of 20.0 to 0.2 mg of INH liter (Table 3). Complete inhibition of the growth of strains with induced INH resistance at IL7 in the presence of 0.1 mg of INH per liter required an average reserpine concentration of 40 mg/liter. However, although this concentration of reserpine alone had no effect on the growth of the initial INH-susceptible strains (Table 2), it did inhibit the growth of these cells with induced INH resistance by as much as 15% (Table 3), an effect which we deemed the nominal effect. The data presented in Table 3 also show that when strains with induced resistance to INH at 20 mg/liter (IL7) were grown in the presence of reserpine at 20 mg/liter and INH at 0.1 and 0.2 mg/liter (with the 0.1-mg/liter concentration being the critical concentration of INH used as the cutoff for the demonstration of resistance of a clinical specimen), their growth was not completely inhibited. This apparent resistance may reflect the large number of efflux pump units that have been induced, with the inhibitory capability of INH overcome by this concentration of reserpine. This interpretation receives support from the data also presented in Table 3, which demonstrate that an increase in the concentration of reserpine to 40 mg/liter practically eliminates resistance to INH. It may be noted from the data in Table 3 that strains that reverted to INH susceptibility had some demonstrable resistance to concentrations of INH that were slightly above and at the cutoff point used for the interpretation of resistance to INH. We interpret these results to indicate that even after extensive culture in drug-free medium, there is still evidence of a reserpine-sensitive mechanism which is completely inhibited only by the higher concentration of reserpine (40 mg/liter).
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TABLE 2. Highest concentrations of CPZ, verapamil, and reserpine with nominal effects on growth of M. tuberculosis parental strains (INH susceptible) and the MICs for complete inhibition of growtha
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TABLE 3. Effect of a known inhibitor of efflux pumps, reserpine, on activities of INH on INH-susceptible strains, strains at IL7 with induced INH resistance,a and INH-susceptible revertants at IL11a
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As mentioned in the introduction, the INH resistance in only about 70 to 80% of M. tuberculosis strains has been correlated to mutations in any of the genes assigned as potential targets or to alternative metabolic pathways for INH inhibition (18, 29). Efflux pumps that render bacteria resistant to antibiotics have been identified in all bacteria, including mycobacteria, studied to date (5, 16, 22). The correlation of antibiotic resistance to an efflux pump is made when the level of antibiotic resistance is reduced in the presence of both antibiotic and an inhibitor of the pump itself. Without exception, each of the studies cited evaluated the organisms for the presence of a preexisting efflux pump (5, 16, 22). Accordingly, strains of M. tuberculosis that are susceptible to INH would by definition not contain a mutation for INH resistance, nor would they be expected to harbor an efflux pump capable of pumping out INH. The demonstration in our study that high-level resistance to INH can be gradually induced in INH-susceptible strains of M. tuberculosis via a mechanism that does not involve a mutation but that is sensitive to reserpine supports the contention that induced resistance might be due to an efflux pump mechanism. Whether induced resistance is due to activation of a preexisting efflux pump, an increase in the number of efflux pump units, or de novo synthesis of the pump itself was not determined in the present study. The growth inhibition results (Table 3) obtained by the use of the lower concentration of reserpine (20 mg/liter) in combination with 0.2 or 0.1 mg of INH per liter with strains obtained at IL11 (INH-susceptible revertant strains), although consistent with the presence of an efflux pump mechanism, are difficult to interpret, inasmuch as the growth of these strains should be fully inhibited. Although it is possible that the induced resistance to INH in our study was due to the selection of mutants capable of synthesizing an efflux pump, we consider this possibility remote, inasmuch as the ATCC control strain and all eight clinical strains were induced to present the efflux pump.
The induction of high-level resistance to INH by continuous exposure to increasing concentrations of the antibiotic has not been described previously. The induction of INH resistance by INH may occur during INH therapy and may account for the remainder of the INH resistance that is not accounted for by mutations and that, due to the limitation of the time interval used for the INH susceptibility assay, is not detected.
We are also indebted to the Institute of Tropical Medicine and Hygiene of Lisbon and its Scientific Council and Units of STD and Virology for encouragement and support and the Tygerberg Hospital, Harry Crossley Foundation, and IAEA (projects SAF6/003 and CRP 9925) for financial assistance (to T. C. Victor).
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