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Antimicrobial Agents and Chemotherapy, January 2003, p. 181-187, Vol. 47, No. 1
0066-4804/03/$08.00+0 DOI: 10.1128/AAC.47.1.181-187.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Sección de Fisiología y Genética Bacterianas, Facultad de Ciencias, Montevideo, Uruguay
Received 14 April 2002/ Returned for modification 3 September 2002/ Accepted 8 October 2002
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In the present work, we deal with microcin H47 (MccH47), a gene-encoded peptide antibiotic produced by a naturally occurring strain of Escherichia coli isolated in Uruguay. The MccH47 genetic system is clustered in a 10-kb DNA segment located in the chromosome (13). The information encoded by this system determines the three basic functions related to antibiosis: synthesis of the antibiotic, its secretion to the extracellular medium, and immunity. In brief, the MccH47 genetic system comprises four genes involved in microcin synthesis (the smallest being the structural gene), two further genes devoted to microcin secretion, and an immunity gene whose product protects the cell against its own antibiotic production (2, 7, 16, 17).
MccH47 is ribosomally synthesized as a peptide precursor which already possesses antibiotic activity of the same specificity as that of mature microcin. This toxic effect was detected in cells carrying the MccH47 structural gene and lacking the remaining genes from the microcin system. Although cells with such a genetic construction were nonviable, some mutant clones grew which exhibited Atp- and MccH47-resistant (MccH47r) phenotypes. This fact, together with the isolation and characterization of MccH47r mutants affected in the atp locus, led us to consider ATP synthase as the possible target of MccH47 antibiotic action (17, 20).
ATP synthase of E. coli consists of a membrane-bound Fo sector to which a cytoplasmic F1 sector is bound. This complex is made up of eight different polypeptides: three subunits form the Fo proton channel in a ratio of a1, b2, c9-12; and five subunits compose the catalytic F1 portion in a stoichiometry of
3, ß3,
1,
1,
1. The atp operon, which encodes these subunits, is arranged as follows: atpIBEFHAGDC, corresponding, respectively, to i (a protein of unknown function that does not form part of ATP synthase) and subunits a, c, b,
,
,
, ß, and
(23).
To enhance our understanding of the mechanism of action of MccH47, we concentrated on two aspects: (i) the genetic characterization of previously isolated MccH47r atp mutants and (ii) the identification of the minimal structure of the ATP synthase complex capable of conferring sensitivity to MccH47.
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TABLE 1. Bacterial strains, bacteriophages, and plasmids used in this study
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Phenotype assays. Microcin sensitivity was assayed by patch test as described previously (20), the level of sensitivity being estimated by the diameter of the zone of inhibition. The Atp phenotype was analyzed through the ability of clones to grow on minimal medium supplemented with succinate. Mutants affected in the atp locus are impaired for oxidative phosphorylation and, consequently, are unable to grow on minimal medium supplemented with a nonfermentable carbon source, such as succinate (4). Strains to be assayed were streaked on minimal medium supplemented with succinate and, in parallel, on the same medium supplemented with glucose instead. The plates were incubated 24 h at 37°C. Strains able to grow on either carbon source were considered Atp+, while those only capable of growing on glucose were scored as Atp-.
Genetic techniques. P1 transduction was performed as described (15). MccH47r atp strains were made deficient for homologous recombination by introducing the recA56 allele from RYC816 by cotransduction with the neighboring srl::Tn10 marker, selecting transductants on LB plates supplemented with tetracycline. The RecA phenotype of the transductants was detected by UV sensitivity. Tn5 insertions of MccH47r atp mutants were cloned in vivo from the chromosome by means of phage MudII4042 lytic propagation as described previously (9, 20). The transducing phage lysates were used to infect MC4100 Mucts Apr, and transductant clones were selected on LB plates supplemented with chloramphenicol and kanamycin.
Manipulation and sequencing of DNA. Routine DNA manipulations were carried out as described previously (18). DNA sequencing was performed by the Centro Técnico de Análisis Genéticos (Facultad de Ciencias, Montevideo, Uruguay). A specific Tn5 sequencing primer was used: 5' CGA TGA AGA GCA GAA GTT AT 3'.
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To identify the gene affected by each of the Tn5 insertions mentioned above, as well as to precisely identify, at the nucleotide level, the sites of insertion, these mutations were first cloned in vivo using the chimerical phage MudII4042, as described in Materials and Methods. In each of the four cloning experiments, transductants of strain MC4100 Mucts Apr should carry recombinant plasmids containing MudII4042 DNA, part or all of the Tn5 sequence, and, presumably, chromosomal DNA adjacent to the transposon. These plasmid constructions were used as start points for cloning DNA segments containing the chromosomal DNA-Tn5 junction sites into multicopy vectors. Nucleotide sequencing was performed upon these latter constructions. In this way, the mutations of strains FGB084, FGB089, FGB091, and FGB099 were cloned; this attempt was extended to the analysis of insertion Tn5 64, whose left end had already been precisely located (20). The following junction sites were cloned and sequenced: the right end of Tn5 64, 84, and 91; the left end of Tn5 89; and both ends of Tn5 99 (Fig. 1). It should be noted that in those cases where information was available from both junction sites (Tn5 64 and 99) a distance of 9 nucleotides was found between them, corresponding to the duplication of the Tn5 target (3). The Tn5 insertions were all found to interrupt the atp operon: Tn5 64 and 99 were located to atpB, Tn5 91 was located to atpE, and Tn5 84 and 89 were located to atpF. These three genes are precisely those that encode the three subunits that constitute the Fo proton channel. To discern if the presence of the entire ATP synthase complex was required for antibiotic action or if the proton channel by itself would suffice, the following experimental series was performed.
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FIG. 1. Tn5 insertions in the atp operon conferring resistance to MccH47. The atp operon is represented as follows: white box, atpI; grey boxes, atp genes encoding Fo polypeptides; black boxes, atp genes encoding F1 polypeptides. The corresponding Atp products are designated below. The sites of Tn5 insertions are shown by arrows, and the left (L) and right (R) nucleotides immediately adjacent to the transposon sequences are indicated, numbered according to the sequence of Walker et al. (23).
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(uncI-uncC), was used as the receptor strain. In the resulting transformant clones, two phenotypes were systematically analyzed: (i) the Atp phenotype, related to the capacity to carry out oxidative phosphorylation, as evidenced by growth on succinate as the sole carbon source, and (ii) the MccH47 sensitivity phenotype, detected by the appearance of growth inhibition halos in patch tests performed with a MccH47-producing strain, as described in Materials and Methods (Fig. 2). It should be mentioned that, as expected, MC1000
(uncI-uncC) exhibited Atp- and MccH47r phenotypes.
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FIG. 2. Recombinant atp constructions and conferred phenotypes. The atp operon is represented at top: white box, atpI; grey boxes, atp genes encoding Fo polypeptides; black boxes, atp genes encoding F1 polypeptides. The corresponding Atp products are indicated. P1, main promoter; P2, secondary promoter; T, terminator. Below, pBJC917 and a series of derivative plasmids are depicted, following the same color code as described above; only atp DNA is represented, with the encoded polypeptides indicated in each case. Deletions are shown as dashed lines. pBJC917 and all the plasmids containing Fo genes keep the P2 promoter. A more detailed description of the construction of each plasmid is given in Table 1. To the right, the Atp and MccH47 sensitivity phenotypes conferred by plasmids to strain MC1000 (uncI-uncC) are indicated.
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(uncI-uncC) with pER20 (encoding subunits a, c, b, and
) or with pER13 (encoding subunits a, c, and b), the inhibition halos had a diameter of ca. 9 mm (see below). Complementation assays. We knew from previous results that when MccH47r atp mutants were transformed with plasmid pBJC917 the resulting strains were MccH47s and Atp+; i.e., the atp operon complemented for both phenotypes (20). The recombinant plasmids mentioned above, encoding different portions of ATP synthase, were now used in complementation assays with the five chromosomal MccH47r atp mutants under study. Prior to these assays, all five strains were made deficient for homologous recombination by means of P1 transduction, as described in Materials and Methods. Once these derivative strains were obtained, they were transformed with all of the recombinant plasmids carrying Fo determinants shown in Fig. 2. The same two phenotypes, oxidative phosphorylation and MccH47 sensitivity, were assayed for in each transformant clone (Table 2).
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TABLE 2. Complementation analysis for oxidative phosphorylation and for MccH47 sensitivitya between atp::Tn5 chromosomal mutationsc and recombinant plasmids carrying atp genes
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In all five mutants, sensitivity to MccH47 was restored by introduction of plasmids carrying the wild-type atp gene corresponding to the chromosomal gene affected by Tn5 insertion. In the strains where complementation took place, different degrees of microcin sensitivity were observed: in general terms, the more atp information was present in trans, the greater the sensitivity to MccH47 was (Table 2 and Fig. 3). It is noteworthy that the single presence in trans of the wild-type atp gene affected in each of the five mutants gave rise to complementation for the MccH47 sensitivity phenotype.
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FIG. 3. Complementation for MccH47 sensitivity between atp::Tn5 chromosomal mutations and recombinant plasmids carrying atp genes. A patch test was performed on the strains indicated, as described in Materials and Methods.
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(uncI-uncC) carrying pMVD31 (coding for the five F1 subunits) was transformed with plasmid pER13 (coding for the a, c, and b subunits). The resultant strain recovered the wild-type Atp+ and MccH47 sensitivity phenotypes, indicating that a functional ATP synthase complex had indeed been assembled. In a parallel assay, the same result was obtained when pER20 (coding for a, c, b, and
subunits) was employed instead of pER13; as expected, no such complementation was observed with pER12 (coding for a and c subunits) (Table 3). |
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TABLE 3. Complementation assays between plasmids carrying Fo and F1 determinants
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The Tn5 insertions of the atp mutants analyzed clustered in the genes encoding the three subunits that compose the Fo proton channel; conversely, no Tn5 insertion was found to affect determinants for the F1 catalytic portion of ATP synthase. These results indicated that each of the components of the proton channel would be directly involved in the mode of action of MccH47, but they did not enable us to discard the participation of the catalytic portion. The construction of strains with genetic information for different portions of ATP synthase as well as the results from complementation experiments clearly indicated that the presence of subunits a, c, and b was at the same time necessary and sufficient for conferring MccH47 sensitivity. Whenever the three components of the proton channel were present, the strain was sensitive to the antibiotic. This proved to be the case regardless of whether the Fo polypeptides were encoded by the chromosome, by a recombinant plasmid, or by a combination of both. These results discard the catalytic F1 portion as being directly involved in MccH47 mode of action. On the other hand, the Atp+ phenotype was not always restored, even in the presence of all the information necessary for the ATP synthase complex. The importance of a cis arrangement of the atp genes to produce a correctly assembled ATP synthase has already been reported (5).
It was still necessary to discern if the subunits a, c, and b encoded by our constructions were correctly assembled into a proton channel. The complementation assays carried out in the MC1000
(uncI-uncC) context provided information on this matter. When this strain was transformed with two plasmids, pMVD31 (encoding only F1 polypeptides) and pER13 (encoding only Fo polypeptides), the resulting strain regained full sensitivity to MccH47 as well as the capacity to carry out oxidative phosphorylation. This would imply that each set of atp genes separately determined the adequate formation of Fo and F1, and that both portions would meet to conform the entire ATP synthase complex. Other authors arrived at the same conclusion through in vitro reconstitution experiments in membranes, making use of similar Fo- and F1-encoding constructions. Although the assembly of the ATP synthase complex might involve interactions between the proton channel and the catalytic portion, they found that each moiety would be able to assemble separately in vivo (1, 10). Thus, it could be deduced that cells only bearing the Fo determinants succeed to assemble the proton channel and, therefore, that Fo itself would be the minimal structure necessary for MccH47 action.
We had previously considered that ATP synthase could be the target of MccH47 antibiotic action (17, 20); now we focus this presumption on the Fo proton channel. In light of this hypothesis, and knowing that MccH47 exerts a bactericidal effect on sensitive E. coli K-12 cells carrying the entire ATP synthase or only the proton channel (12; our unpublished results), it could be reasoned that the interaction of MccH47 with the latter structure would be responsible for cell death. If this were the case, antibiotic action would be related to Fo function, i.e., proton translocation. The passage of protons through Fo can conceivably be altered in three ways: blockage of translocation, proton pumping against the gradient, and proton entry downstream of the gradient. The first possibility cannot account for cell death, since cells would survive by means of substrate-level phosphorylation under most of the culture conditions employed. The second possibility has an energetic cost; with the entire ATP synthase complex, the energy required to extrude protons could be provided by the coupled hydrolysis of ATP by F1, but in cells with only Fo, no such energy would be supplied. Therefore, only the third possibility remains clearly feasible, since it is the only one that can account for the bactericidal action of MccH47 in both contexts, with the entire ATP synthase and with only Fo: the membrane potential would be dissipated by the action of MccH47, which would provoke an unregulated entry of protons. It should also be taken into account that the presence of the entire ATP synthase confers higher levels of sensitivity to MccH47 than does the presence of the single proton channel, indicating that the F1 portion, although not being strictly required for antibiotic action, enhances microcin's effect in a way that remains to be elucidated.
In summary, results presented in this work support our previous findings on the need of FoF1 ATP synthase for MccH47 antibiotic action (20). Here we demonstrate that the entire enzymatic complex is not required: the Fo proton channel is both necessary and sufficient for conferring sensitivity to MccH47. So far, all the in vivo analyses performed on MccH47 mode of action indicate that the Fo portion of ATP synthase would be the target of this antibiotic. MccH47 thus appears to be a natural product with an unprecedented mode of action on prokaryotes. This hypothesis will need to be tested in in vitro studies.
We thank W. S. A. Brusilow for kindly providing the strain MC1000
(uncI-uncC). We are also grateful to María Parente for excellent technical assistance.
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