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Antimicrobial Agents and Chemotherapy, January 2003, p. 302-308, Vol. 47, No. 1
0066-4804/03/$08.00+0 DOI: 10.1128/AAC.47.1.302-308.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Chemistry,1 Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204,2 Department of Chemistry, Southern Methodist University, Dallas, Texas 75275,3 Section of Infectious Diseases, Department of Medicine, Baylor College of Medicine, Houston, Texas 770304
Received 1 July 2002/ Returned for modification 20 August 2002/ Accepted 1 October 2002
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The importance of metronidazole in treating various infectious diseases and its unusually broad spectrum of activity have led to investigation of its mechanism of action. Most studies have focused on the activity of nitroimidazoles against the protozoan Trichomonas vaginalis, the causative organism of trichomoniasis in humans. Researchers initially believed that the drug inhibited hydrogenase, an enzyme involved in anaerobic carbohydrate metabolism (6). Further studies showed, however, that the ultimate target of the drug was DNA, and that nitroimidazoles not only inhibited DNA synthesis, but also degraded existing DNA (16). Labeling experiments implicated a radical intermediate as the agent responsible for DNA degradation. Within anaerobic cells nitroimidazoles were found to be reduced to radical anion species with the ability to initiate DNA degradation through abstraction of atoms of the nucleic acid backbone (5). The redox potential of nitroimidazoles is more positive than the internal redox environment of anaerobic cells, but is more negative than the internal redox environment of aerobic cells (5). This provides a driving force for radical anion formation in anaerobic cells and satisfactorily explains the selective toxicity of nitroimidazoles toward anaerobic organisms.
Despite decades of use, metronidazole has been noteworthy for the relatively low level of resistance developed by organisms to its cytotoxic effects. Recently, however, the isolation of resistant strains of H. pylori (19), T. vaginalis (17), Entamoeba histolytica (25), and Giardia lamblia (11) has been reported. Characterization of these strains has revealed altered structures or cellular levels of electron transfer proteins. For example, metronidazole-resistant strains of T. vaginalis, G. lamblia, and E. histolytica have all been shown to harbor reduced levels of small iron-sulfur proteins, termed ferredoxins, relative to sensitive strains (17, 11, 25). Similarly, metronidazole-resistant strains of H. pylori display mutations in the fdrX gene, which codes for an NADPH-dependent nitroreductase (19). These observations implicate decreased reductive activation of metronidazole as a common mechanism for resistance.
To date there is a poor understanding of the structural properties of nitroimidazoles that determine their activity against microorganisms. Studies have shown that neither the nitroimidazole redox potential nor its partition coefficient correlates well with the toxicity of the agent toward T. vaginalis (5, 26). In light of the role of ferredoxin in the reductive activation of metronidazole, the reaction between nitroimidazoles and this iron-sulfur protein became a focus of research. The most-extensive work has centered on the ferredoxin from T. vaginalis. Lindmark and Müller discovered that metronidazole reduction by ferredoxin-depleted extracts of T. vaginalis was greatly increased upon addition of exogenous ferredoxin (10). Moreno et al. observed that the intensity of the signal for the metronidazole radical anion in extracts from the trichomonad Tritrichomonas foetus was substantially amplified by addition of ferredoxin (14).
Detailed structure-activity studies would elucidate the properties of nitroimidazoles that influence reactivity with ferredoxins and, in turn, antimicrobial activity. Prior to the present work, however, no kinetic constants for the reaction of any electron transfer protein with nitroimidazoles have been published. Herein we report the first measurements of the kinetics of reduction of select nitroimidazoles (Table 1) by reduced ferredoxins. We employed [2Fe-2S] ferredoxins from two distinct metronidazole-susceptible organisms, T. vaginalis (7) and the vegetative form of cyanobacterium Anabaena sp. strain 7120 (1). The results of these experiments demonstrate that T. vaginalis ferredoxin is 1 to 2 orders of magnitude more reactive than the cyanobacterial ferredoxin in spite of the smaller driving force for reaction. Further, we report that the in vitro reactivities of the reduced ferredoxins toward nitroimidazoles parallel the susceptibilities of the host organisms to the agents.
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TABLE 1. Structures of nitroimidazoles used in this study
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Nitroimidazole preparation. 1-Alkyl-5-nitroimidazoles 3 to 5 were prepared following methods described in the literature (2, 13). Each product was completely characterized by 1H and 13C nuclear magnetic resonance and elemental analysis. The substitution pattern of the products (1-alkyl-5-nitro versus 1-alkyl-4-nitroimidazole) was confirmed by UV spectroscopy, which revealed a characteristic blue shift of the maximum absorbance in 2 M H2SO4 relative to neutral solution for the 5-nitro isomers (Table 2) (4). Reduction potentials were obtained by cyclic voltammetry on a BAS 50W electrochemical system with a platinum electrode using 0.1 M acetonitrile solutions of the nitroimidazoles.
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TABLE 2. Yields and spectroscopic properties of 1-alkyl-5-nitroimidazoles from alkylation of 4-nitroimidazole
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2 mM), degassed by blowing humidified argon over the surface for 15 min, and added to deoxygenated buffer. Sodium dithionite solution (0.1 M) was prepared by adding 5 ml of degassed 10 mM Tris-HCl, pH 8.0, containing 0.15 ml of 3 M NaOH to 87 mg of fresh sodium dithionite. The tube containing solid dithionite was repeatedly evacuated and filled with argon before the buffer solution was added. The reduced protein was generated by adding 2 to 3 equivalents of sodium dithionite to the ferredoxin solution under anaerobic conditions. Solutions of oxidants and ferredoxins were made up at the required pH, and ionic strength was adjusted by addition of 5 M NaCl solution. Reoxidations of reduced T. vaginalis and Anabaena ferredoxins by nitroheterocycles were monitored at 458 and 422 nm, respectively. At least five kinetic traces were collected at the appropriate wavelengths for each oxidant concentration; first-order rate constants (kobs) were calculated by computer fitting to a single-exponential rate equation using the SI-FIT program (OLIS, Inc.).
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The ferredoxins were obtained through expression of the genes and isolation of the holoproteins in E. coli as described previously (22, 23). The oxidation of the dithionite-reduced [2Fe-2S] ferredoxins by nitroimidazoles was monitored under pseudo-first-order conditions as described by us for the reaction of the ferredoxins with inorganic reagents (24). The reaction traces were accurately modeled by single-exponential fits. The rate of disappearance of the oxidized nitroimidazoles coincided with the rate of the appearance of the oxidized forms of the ferredoxins. Interestingly, neither reduced ferredoxin was reoxidized by the nitrofuran antibiotic nitrofurazone 6.
The reduced ferredoxins were readily oxidized by nitroimidazoles to their oxidized forms. Plots of kobs versus the concentration of the oxidant afforded values for the second-order rate constants (k2). (Table 3). The pseudo-first-order rate constants for reaction of Anabaena ferredoxin with nitroimidazoles 1 to 5 and for T. vaginalis ferredoxin with nitroimidazoles 1 to 3 displayed linear dependences on oxidant concentration, consistent with a second-order process (Fig. 1). The rate constants for nitroimidazoles 4 and 5, however, gave nonlinear concentration dependences for reaction with T. vaginalis ferredoxin. The approach to a limiting value for oxidation rate at increased nitroimidazole concentration suggested a mechanism in which bimolecular complex formation preceded electron transfer for these two heterocycles. Assuming the kinetic model shown in equations 1 and 2, in which K is the association constant, and ket is the electron transfer rate constant within the bimolecular complex, the pseudo-first-order rate constants for oxidation of T. vaginalis ferredoxin by nitroimidazoles 4 and 5 obeyed the relationship given in equation 3, where K is k1/k-1 (see reference 24):
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TABLE 3. Kinetic parameters for oxidation of reduced ferredoxins by nitroimidazoles
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FIG. 1. Concentration dependence of the pseudo-first-order rate constant for ferredoxin oxidation (kobs) on nitroimidazole concentration. Data points for oxidation by compound 2 of Anabaena ferredoxin ( ) and T. vaginalis ferredoxin ( ) and by compound 4 of Anabaena ( ) and T. vaginalis ferredoxin ( ) were obtained from the average of five experiments. Standard errors of the mean are shown as vertical bars. Fits to concentration dependences were obtained by nonlinear least-squares fits.
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G0 is the reaction free energy (directly proportional to the nitroimidazole reduction potential) and
is the reorganization energy. As seen in Fig. 2, although the nitroimidazole-Anabaena reaction system roughly conformed to the Marcus relationship, the T. vaginalis system did not produce a linear correlation. This finding signified that the latter system adhered particularly poorly to Marcus's law.
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FIG. 2. Marcus plot of logarithm of the second-order rate constant for oxidation of Anabaena ( ) or T. vaginalis ferredoxin ( ) against the reduction potential of the nitroimidazole. Data points are the average of five experiments. Standard errors of the mean are shown as vertical bars.
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FIG. 3. Plot of the logarithm of the second-order rate constant for oxidation of Anabaena ( ) or T. vaginalis ferredoxin ( ) against the partition coefficient K of the nitroimidazole (x axis). Data points are the average of five experiments. Standard errors of the mean are shown as vertical bars.
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FIG. 4. Plot of the logarithm of the second-order rate constant for oxidation of Anabaena ( ) or T. vaginalis ferredoxin ( ) against the value of the Taft steric parameter Es of the N-1 substituent of the nitroimidazole. Data points are the average of five experiments. Standard errors of the mean are shown as vertical bars.
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First, the T. vaginalis ferredoxin was 1 to 2 orders of magnitude more reactive toward all nitroimidazoles than the Anabaena protein. This finding is somewhat surprising in light of the more-negative reduction potential of the Anabaena ferredoxin, which would result in a greater thermodynamic driving force relative to the protozoal ferredoxin. This observation implies that the driving force is not the primary factor that determines reaction rate between [2Fe-2S] ferredoxin and nitroimidazoles. The Marcus plot in Fig. 2 confirms this conclusion. A linear correlation between the logarithm of the rate constant and the electrochemical potential difference is expected for systems of constant reorganization energy and electronic coupling between the redox partners. The fact that the correlation for the T. vaginalis protein was not linear, however, implies that the reorganization energy or the coupling between the redox centers are the defining factors.
Focused analysis of the data leads to the conclusion that the coupling or, in this instance, the distance separating the iron-sulfur cluster and the nitro group of the imidazole is the critical factor that determines the electron transfer rate. Inspection of Fig. 3 reveals a poor correlation between the partition coefficient of the nitroimidazole and its reactivity; this result implies that the reactivity of the nitroimidazole is not particularly influenced by its hydrophobicity. According to Fig. 4, on the other hand, the electron transfer reactivities of the nitroimidazoles with both ferredoxins decreased linearly with the size of the nitrogen substituent, as measured by the Taft steric parameter Es. This finding is consistent with distance being the defining factor in electron transfer, with larger groups hindering approach of the electron accepting nitro group to the electron-donating iron-sulfur center.
The difference in reactivity between the two ferredoxins is also likely due to distance modulation of the electron transfer rates. Support for this hypothesis comes from analysis of the crystal structures of the two ferredoxins (3, 18). While the [2Fe-2S] clusters of both ferredoxins are bound to side chain sulfhydryl groups on similar peptide loops, the cluster of the T. vaginalis ferredoxin has an exposed bridging sulfur at the bottom of a cavity that is not found in the Anabaena protein (Fig. 5). The cavity measures 3.3 by 6.5 by 4.2 Å and is lined with hydrophobic amino acid side chains. Thus, small molecules, such as nitroimidazoles, may approach the redox center more closely in the trichomonal protein, resulting in faster electron transfer reactions. Another example of prosthetic group exposure affecting electron transfer reactivity was described by Tollin and coworkers (21). They concluded that differences in exposure of heme groups to exogenous molecules was responsible for differences in reactivity of different cytochrome c proteins to reduced flavins.
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FIG. 5. Surface of T. vaginalis ferredoxin showing cavity that exposes the bridging sulfur atom to solvent (arrow). Surface map was calculated using the VMD program by rolling a probe with a 1.4-Å radius over the atoms of the protein.
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In conclusion, we have shown that nitroimidazoles react rapidly in vitro with reduced [2Fe-2S] ferredoxins and that reactivity of the nitroimidazole is primarily influenced by its ability to approach from the [2Fe-2S] center. Also we demonstrated that the reactivity of nitroimidazoles parallels their cytotoxicity toward T. vaginalis. These results indicate that in vitro kinetic assays may be useful screens for antitrichomonal activity of new nitroheterocycles. New generations of nitroheterocycle agents may be also devised that overcome resistance by selectively attacking different electron donor proteins, perhaps through affinity tags.
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