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Antimicrobial Agents and Chemotherapy, October 2003, p. 3305-3310, Vol. 47, No. 10
0066-4804/03/$08.00+0 DOI: 10.1128/AAC.47.10.3305-3310.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Cell and Molecular Biology, Pharmacia Corporation, Kalamazoo, Michigan 49001
Received 9 September 2002/ Returned for modification 28 January 2003/ Accepted 8 July 2003
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The rationale for the germ tube formation assay with Candida albicans was distilled from an extensive literature. C. albicans is a dimorphic fungus, capable of growth in a yeast or filamentous form. The yeast-to-hyphal transition begins with the formation of a germ tube, the initial stage of hyphal formation, making this transition a potentially useful end point for an antifungal drug assay (9). The end point could be particularly relevant for glucan synthase inhibitors, since there is extensive synthesis of cell wall during the formation of hyphae (7, 10). Indeed, Hawser and Islam (6) first demonstrated that inhibition of germ tube formation could be more sensitive to drug intervention than inhibition of growth, permitting the assessment of nonidealized antifungal drugs. The adherence of C. albicans germ tubes to plastic provides for the simple removal of yeast cells and objective quantitation of germ tubes via cellular staining (1, 12). These observations provide a compelling basis for the germ tube formation assay. We set out to implement a cell-based assay that would facilitate the biological evaluation of compounds during the hit-to-lead transition of drug discovery. This paper describes our use of a facile colorimetric assay for the objective measurement of hyphal growth in C. albicans.
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Antifungal agents and chemicals. Caspofungin acetate was purchased as the formulated therapeutic agent, Cancidas. Cilofungin was obtained from Eli Lilly. Fluconazole, ketoconazole, and amphotericin B were purchased from Sigma Chemical Co. (St. Louis, Mo.). All remaining compounds were synthesized at Pharmacia Corporation. Compounds were dissolved to a concentration of 20 mM in 100% dimethyl sulfoxide (Sigma) until needed with the exception of caspofungin, which was made up in 1x phosphate-buffered saline (Gibco BRL) at a concentration of 10 mg/ml. All compounds were stored at -20°C until needed.
Candida growth conditions. A colony of C. albicans ATCC 31711 was used to inoculate 5 ml of YPD in a 14-ml Falcon tube (Becton Dickinson, Lincoln Park, N.J.). To obtain a saturated culture containing synchronized cells, the culture was incubated for at least 48 h at 25°C without shaking. Hawser et al. (5) have shown that these culture conditions facilitate complete conversion to germ tubes. The culture was centrifuged for 5 min to pellet the cells, and the pellet was then resuspended in 10 ml of RPMI 1640 medium. Cells were diluted to a concentration of 2 x 106 cells/ml in RPMI 1640 medium, and three 50-µl aliquots were dispensed into a 96-well flat-bottom polystyrene plate (Costar 3595; Corning Life Sciences, Corning, N.Y.). Compounds were freshly prepared by diluting the test compounds into RPMI 1640 medium at concentrations of 0 to 400 µM with dimethyl sulfoxide at a final concentration of 2.5%. Three 50-µl aliquots were dispensed into three wells on a 96-well plate for each compound at each concentration. After the plate was briefly shaken on a Mini-Orbital Shaker (Bellco Biotechnology, Vineland, N.J.), the plate was placed in a 37°C incubator (Queue cell culture incubator; Queue Systems Inc., Packersburg, W.Va.) for 4 h without shaking.
Crystal violet staining of C. albicans. Plates were removed from the incubator and processed by the procedure of Abe et al. (1). The medium in the plates was discarded by inverting the plates. The C. albicans cells were washed once by immersion in 70% ethanol, which was discarded, and then 200 µl of 0.25% sodium dodecyl sulfate (SDS) (Gibco BRL) was added to each well. The SDS was discarded, and the plates were washed three times by immersion in distilled water. Germ tubes attached to the wells were stained for 15 min with 100 µl of 0.02% crystal violet (Sigma) dissolved in phosphate-buffered saline. The crystal violet stock solution was filtered through a 0.22-µm-pore-size filter prior to use to remove precipitated dye particles. The dye solution was removed by inverting the plates, and the plates were washed three times with water, once with 0.25% SDS, and twice more with water. After the plates were dried, 200 µl of isopropanol (EM Science, VWR International) containing 0.04 N HCl (EM Science) and 50 µl of 0.25% SDS were added to the wells and mixed briefly on the orbital shaker. The absorbance at 590 nm was determined by using a SpectramaxPlus plate spectrophotometer and SoftMax Pro version 2.4.1 software (Molecular Devices, Sunnyvale, Calif.). Fifty percent inhibitory concentrations (IC50s) were determined by using GraphPad Prism version 3.00 for Windows (GraphPad Software, San Diego, Calif.). Efficacy values were calculated by using the following equation: [1 - (curve minimum/curve maximum)] x 100.
MIC determinations. MICs using the NCCLS protocol were determined against a panel of fungi including several Candida and Aspergillus species and strains.
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The use of synchronized, stationary yeast cells is critical for obtaining germ tube induction frequencies of greater than 99%, as first shown by Hawser et al. (5). Synchronized C. albicans cells were obtained by culturing in YPD at 25°C for a minimum of 48 h without agitation. Our experiments confirmed the observations of Hawser et al., as we achieved germ tubes on greater than 99% of untreated cells in all experiments. We determined that an inoculum of 106 cells/ml consistently yielded optical densities at 450 nm of 0.3 to 0.4 (data not shown). Finally, we found that the reported staining conditions of 0.02% crystal violet for 15 min (1) were suitable for this application. One observation we did make was the necessity of filtering the prepared crystal violet stock solution through a 0.22-µm-pore-size filter. Even at a concentration of 0.02%, some of the dye remains in a crystalline state. Without filtration, these crystals occasionally were transferred into the wells and significantly altered the absorbance readout.
Definition of the processing parameters permitted the initiation of validation experiments with known antifungal agents. Figure 1A shows the effect of two known glucan synthase inhibitors, cilofungin and caspofungin, on germ tube formation. These two echinocandins inhibit the yeast-to-hyphal transformation at very low compound concentrations with IC50s of 0.27 µM (0.28 µg/ml) and 0.24 µM (0.29 µg/ml), respectively. The value for cilofungin is much lower than reported values of 10 to 12 µg/ml for other echinocandins (5, 6). This difference may be due to several factors, including differences in the strain of C. albicans used, incubation time, cell inoculum, growth medium, and method for end point measurement.
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FIG. 1. Dose-response curves illustrating the IC50s obtained in the germ tube formation assay. (A) Values for known glucan synthase inhibitors, cilofungin ( ) and caspofungin ( ). (B) Values for compounds in a novel class of glucan synthase inhibitors, PNU143678E ( ), PNU144159E ( ), and PNU271965E ().
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FIG. 2. Structures of several Pharmacia (PNU) compounds identified as glucan synthase inhibitors.
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An important aspect of our validation of the methodology was the correlation of morphological changes with absorbance measurements. Microscopic observation of cells throughout these validation studies and many subsequent experiments with the novel class of glucan synthase inhibitors verified that the absorbance readings were an accurate representation of the incidence of germ tubes. Figure 3 shows micrographs of C. albicans cultures after treatment with glucan synthase inhibitors. All three compounds show dose-dependent inhibition of the yeast-to-hyphal transition.
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FIG. 3. Unstained C. albicans cells at x20 magnification after treatment with glucan synthase inhibitors. (A to C) Caspofungin treatment at 0.31, 0.08, and 0 µM, respectively; (D to F) PNU143678E treatment at 100, 25, and 0 µM, respectively; (G to I) PNU144159E treatment at 12, 1.6, and 0 µM, respectively.
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FIG. 4. Reproducibility of estimates for IC50 and efficacy for a subset of 11 compounds from a novel class of glucan synthase inhibitors evaluated on multiple occasions in the germ tube formation assay. Each triangle on the plots is the calculated value from a curve-fitting analysis of the dose-response curve. The average interassay coefficients of variation for IC50 and efficacy estimates were 17 and 5%, respectively.
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FIG. 5. IC50s for 288 compounds in the germ tube formation assay. The values for reference compounds (amphotericin B, caspofungin, cilofungin, fluconazole, ketoconazole, and voriconazole) are indicated by the arrows. The remaining compounds are from a novel class of glucan synthase inhibitors.
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FIG. 6. Efficacy values for inhibition of germ tube formation (n = 273 active compounds). The values for reference compounds (amphotericin B, caspofungin, and cilofungin) are indicated by arrows. The remaining compounds are from a novel class of glucan synthase inhibitors.
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FIG. 7. The ratios for inhibition of germ tube formation (IC50) to MIC are plotted for the compounds showing activity in both assays (n = 58). Values for reference compounds amphotericin B, caspofungin, and cilofungin are indicated by arrows. The remaining compounds are from a novel class of glucan synthase inhibitors.
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We were able to develop a simple, objective, and quantitative assay to measure the yeast-to-hyphal transition. The use of synchronized cells, RPMI 1640 medium, and plastic labware was likely responsible for the uniform cellular response described here (5). Crystal violet staining and a spectrophotometric quantitation eliminated the subjectivity and tediousness of visual scoring. The simplicity of the assay in conjunction with a 96-well assay format enhanced its capacity, permitting the evaluation of more compounds each week, and rapid turnaround of data for the medicinal chemist. Data are generated after 4 h as opposed to the 24 to 72 h required for other whole-cell assays, such as proliferation and MIC determinations. Most importantly, dose-response curves with replicates could be performed, giving us the opportunity to fully characterize responses and perform statistical analyses on multiple end points. We could calculate potencies (IC50s), determine efficacy, and evaluate slopes of the fitted curves of each compound for germ tube inhibition. The excellent day-to-day reproducibility in these responses facilitated comparisons between compounds synthesized at different times during the project.
Amphotericin B and the known glucan synthase inhibitors, cilofungin and caspofungin, had IC50s in the assay of 0.17, 0.27, and 0.24 µM, respectively. In contrast, fluconazole, ketoconazole, and voriconazole had minimal activity in this assay at concentrations of >100 µM. The sensitivity of the method may allow the demonstration of biological activity for compounds that are inactive in other whole-cell assays. The utility of the germ tube inhibition assay was amply demonstrated through our characterization of the novel class of glucan synthase inhibitors, but it may not be appropriate for all mechanistic classes of antifungal agents, as demonstrated by the azoles. Clearly, the germ tube assay was more sensitive, allowing the determination of a definitive IC50 for most of the compounds, as contrasted to the determination of a MIC for approximately one-third of the same compounds. Unfortunately, none of the novel glucan synthase inhibitors evaluated during our studies were as potent as the known echinocandin inhibitors of glucan synthase for inhibition of germ tube formation.
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