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Antimicrobial Agents and Chemotherapy, November 2003, p. 3421-3429, Vol. 47, No. 11
0066-4804/03/$08.00+0 DOI: 10.1128/AAC.47.11.3421-3429.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK-5230 Odense M,1 Department of Veterinary Microbiology, The Royal Veterinary and Agricultural University, DK-1870 Frederiksberg C, Denmark,2 Department of Microbiology, University College Cork, Cork, Ireland3
Received 18 June 2003/ Returned for modification 28 July 2003/ Accepted 11 August 2003
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Two-component signal transduction systems allow bacteria to recognize and interpret a variety of signals from the environment (15). Two-component systems typically consist of a membrane-bound sensor histidine protein kinase and a response regulator-transcription factor. The sensor kinase allows the bacterium to sense signals from the external environment and transfer this information to the response regulator inside the cell though a phosphorylation cascade. In response to specific signals, the sensor kinase becomes phosphorylated at a conserved histidine residue though an autophosphorylation event. The phosphoryl group is subsequently transferred from the kinase to a conserved aspartic acid residue in the response regulator. Phosphorylation of the response regulator alters its DNA-binding activity, resulting in the up- or down-regulation of genes under its control.
Certain two-component signal transduction systems have been shown to contribute to the resistance or sensitivity to antibiotics. In enterococci the VanRS two-component system mediates resistance to the glycopeptide antibiotic vancomycin by controlling the expression of genes required for the synthesis of modified cell wall precursors (3). The replacement of D-alanyl-D-alanine with D-alanyl-D-lactate results in a modified peptidoglycan with a lower binding affinity for vancomycin. The presence of vancomycin or other cell wall-acting agents in the growth medium appears to generate a signal sensed by VanS; however, the reports on the specificity of induction of the VanRS two-component system are conflicting (1, 4, 12, 14, 35). In Streptococcus pneumoniae, the VncRS two-component system mediates vancomycin-induced cell death (24), thus demonstrating that signal transduction is required for the bactericidal activity of vancomycin in this pathogen. However, these conclusions were not confirmed in a more recent study (31). A second two-component system of S. pneumoniae, CiaHR, plays a role in ß-lactam resistance and responds to changes in the external concentration of Ca2+ ions (8).
A previous study (20) identified three response regulators of two-component systems in L. monocytogenes LO28 that are important for virulence and growth under stress conditions found in the host environment. One of these response regulators, CesR (the cephalosporin sensitivity response regulator, formerly designated RR96), is homologous to VanR of enterococci (20). Inactivation of cesR resulted in reduced pathogenesis in mice and improved resistance to ethanol, a widely used disinfectant and food preservative. In the present study, we have investigated in more detail the molecular mechanisms underlying the reduced pathogenesis and increased ethanol resistance displayed by the mutant with the cesR insertion. We show that in-frame deletions of either cesR or the gene located downstream from cesR, cesK (cephalosporin sensitivity histidine protein kinase), which encodes a histidine protein kinase, increased the organism's sensitivity to cell wall-acting antibiotics of the ß-lactam family. We have also identified a small open reading frame, orf2420, regulated by the CesRK two-component system. The transcription of orf2420 is strongly induced during the transition into stationary phase. Furthermore, various antimicrobial agents that affect the bacterial cell wall act as inducers of orf2420 expression in a CesRK-dependent manner. These results suggest a role for CesRK in sensing and responding to changes in cell wall integrity.
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DNA sequence analysis of the cesR region in L. monocytogenes LO28 and computer analyses of DNA and protein sequences. On the basis of the genome sequence of L. monocytogenes EGD, we designed PCR primers (Table 1) for the amplification of regions in L. monocytogenes LO28 up- and downstream from cesR. For the PCRs we used LO28 chromosomal DNA as the template and Pfx DNA polymerase (Invitrogen), which possesses proofreading 3' to 5' exonuclease activity. DNA sequence analysis of the PCR fragments was carried out by using the CEQ dye terminator cycle sequencing kit (Beckman Coulter). Homology searches were performed with the BLAST program (2). For the identification of signal peptides, we used the Signal P program (23). For the identification of transmembrane regions, we used the TMpred program (17).
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TABLE 1. Primers used in this study
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cesR,
cesK, and
orf2420 fragments were digested with XbaI and EcoRI, whereas the
lmo2423 and
lmo2424 fragments were digested with BamHI and XbaI. The fragments were then cloned into temperature-sensitive shuttle vector pAUL-A and digested with XbaI-EcoRI or BamHI-XbaI (5). The resulting plasmids were introduced into L. monocytogenes LO28 by electroporation (25), and integration of the plasmid was achieved by growing the transformed strains at 42°C in the presence of erythromycin. To allow allelic exchange between the intact genes and the deleted genes to take place, the strains containing the integrated plasmids were then grown at 30°C in the absence of erythromycin. Finally, strains carrying the desired deletions were identified by PCR, and correct deletion events were verified by DNA sequence analysis of the resulting PCR products. Ethanol tolerance assays. Overnight cultures of the L. monocytogenes strains in BHI medium were diluted 1:100 in fresh BHI medium containing 5% ethanol. Bacterial growth was monitored over a period of 24 h by measuring the optical density at 600 nm (OD600).
Antibiotic assays.
The sensitivities of the wild-type strain and mutant strains
cesR,
cesK, and
orf2420 to a variety of antibiotics were assayed by agar diffusion. Overnight cultures were diluted to 107 CFU/ml and swabbed onto BHI agar. Filter disks (diameter, 6 mm; Oxoid) containing the antibiotics to be studied were placed on the surfaces of the agar plates. The plates were incubated overnight at 37°C. On the following day, the diameters of the zones of bacterial growth inhibition surrounding the disks were measured. The filter disks contained 30 µg (unless otherwise stated) of the following antibiotics: gentamicin, erythromycin, streptomycin (25 µg), rifampin, vancomycin, novobiocin, tetracycline, polymyxin B (300 µg), colistin sulfate (25 µg), minocycline, clindamycin (10 µg), kanamycin, spectinomycin (25 µg), fusidic acid (10 µg), chloramphenicol, oxytetracycline, ampicillin (10 µg), penicillin G (10 µg), cephalothin, cefaclor, cefoperazone, cephalexin, cefriaxone, cefoxitin, cefuroxime, cefotetan, and ceftazidime. For each antibiotic, at least three independent disk diffusion assays were performed per strain.
RNA techniques.
Total RNA was prepared by a hot acid phenol procedure (28). Primer extension analysis was performed as described previously (22) by using 15 µg of total RNA per reaction mixture. Primers Thio1, Kat8, RR-PRIM, and Orf7 (Table 1) labeled with 32P at the 5' end were used for detection of the lmo2424, lmo2423, cesR, and orf2420 transcription start sites, respectively. For detection of transcription start sites, RNA was prepared from wild-type cell cultures at an OD600 of 0.6. For measurement of orf2420 induction by ethanol and cefuroxime, RNA was prepared from wild-type and
cesR cell cultures with and without treatment with 1% ethanol or 4 µg of cefuroxime ml. The inducers were added to the cultures at an OD600 of 0.3, and samples for RNA preparations were collected 20 min after induction. Controls without ethanol and cefuroxime treatment were included in the experiment.
Mouse virulence assay. Overnight cultures were diluted 100-fold and grown to an OD600 of 0.6. The bacteria were washed and resuspended in phosphate-buffered saline prior to infection. Six-week-old female BALB/C mice were infected intragastrically with 2 x 109 bacteria or intraperitoneally with 1 x 10-4 bacteria. Three days after infection, the mice were killed and the spleen of each mouse was homogenized. Tenfold serial dilutions of the homogenized spleen in physiological saline buffer were plated onto BHI agar plates. Colonies were counted after overnight incubation at 37°C. The data were tested for significance by using the Student t test.
Construction of lacZ fusions to cesR, orf2420, lmo2423, and lmo2424 promoters and ß-galactosidase assays. DNA fragments containing the promoter regions of cesR, orf2420, lmo2423, and lmo2424 were amplified by PCR with primers RR-For and RR-Rev, Orf-For and Orf-Rev, Kat-For and Kat-Rev, and Thio-For and Thio-Rev, respectively (Table 1). The PCR fragments were digested with EcoRI and BamHI and cloned into EcoRI-BamHI-digested pTCV-lac, a shuttle vector for the construction of transcriptional fusions (29). Correct insertion of the fragments into pTCV-lac was verified by DNA sequencing analyses. The resulting plasmids containing fusions of the promoters to lacZ were electroporated into the wild-type and mutant strains.
For measurement of orf-lacZ expression in the presence of a variety of antimicrobial agents, wild-type,
cesR, and
cesK strains carrying the orf2420-lacZ fusion were grown in BHI medium to an OD600 of 0.2. The cultures were split, and the potential inducers were added at subinhibitory concentrations. Controls to which no inducers were added were included in the experiment. Cells were collected 1 h after the addition of the potential inducers and assayed for ß-galactosidase activity. The antimicrobials tested and their final concentrations were as follows: ethanol, 1%; cephalexin, 4 µg/ml; cefuroxime, 4 µg/ml; penicillin G, 0.05 µg/ml; ampicillin, 0.05 µg/ml; vancomycin, 0.1 µg/ml; bacitracin, 4 µg/ml; and D-cycloserine, 20 µg/ml. For the lysozyme induction experiments, cells were collected 2 h after the addition of lysozyme to a final concentration of 0.2, 0.5, or 1 mg/ml.
For the ß-galactosidase assay, cells were permeabilized by treatment with 0.5% toluene and 4.5% ethanol, and ß-galactosidase activities were determined as described previously (21). The specific activity of ß-galactosidase was calculated as [(OD420 of the reaction mixture - OD550 of the reaction mixture)/(reaction time in minutes x OD600 of the cells used in the reaction mixture)]. The specific ß-galactosidase activities presented are the averages of three independent experiments, in which the observed variations did not exceed 10%.
Nucleotide sequence accession number. The nucleotide sequence of the locus in L. monocytogenes LO28 encoding the putative proteins Lmo2424, Lmo2423, CesR, CesK, and Orf2420 was submitted to GenBank and given accession number AY281157.
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FIG. 1. cesRK locus in L. monocytogenes LO28. (A) Genetic organization of the cesRK locus. Transcription start sites are indicated by arrows. Putative transcription terminators are indicated by lollipops. See text for a detailed description of the putative gene products. (B) The putative protein encoded by orf2420 contains a signal peptide sequence of 25 aa (underlined). The putative cleavage site is indicated by an arrow.
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FIG. 2. Primer extension analysis of promoters in the cesRK locus. Identification of transcription initiation sites at the promoters of lmo2424 (A), lmo2423 (C), cesR (E), and orf2420 (G). The primer extension products are indicated by arrows. Lanes G, A, T, and C are sequencing ladders. The promoter region sequences are shown for lmo2424 (B), lmo2423 (D), cesR (F), and orf2420 (H). Translation start and stop codons are indicated in boldface. The transcription start site is indicated by an arrow. A putative transcription terminator upstream from lmo2424 is underlined in panel B.
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FIG. 3. Ethanol tolerance of wild-type and mutant strains. The growth of the wild-type (wt) strain, cesR insertion mutant BK96, and strains carrying in-frame deletions of lmo2424, lmo2423, cesR, cesK, and orf2420 was monitored in BHI medium containing 5% ethanol. The data represent the means of three experiments, in which the observed variation did not exceed 10%.
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cesR strain, or the
cesK strain. On day 3, the number of bacteria in the spleens of the mice was estimated as described in Materials and Methods. The counts of the
cesR and
cesK mutants in the spleens on day 3 corresponded to the levels previously observed for BK96, i.e., a 10-fold reduction in the number of CFU per spleen relative to the number of CFU of the wild-type strain (P < 0.03) (Fig. 4A). These results support previous observations, suggesting that the CesRK two-component system contributes to the pathogenicity of L. monocytogenes in mice.
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FIG. 4. Mouse virulence assays with wild-type, orf2420, cesR, and cesK strains. The growth and survival of wild-type (black bars), orf2420 (gray bars), cesR (white bars), and cesK (hatched bars) strains in the spleens of infected mice were evaluated on day 3 after i.g. (A) or i.p. (B) injection. The log10 CFU per spleen is the mean average for five mice. The experiments were repeated twice, with similar results each time.
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orf2420 mutant was significantly impaired in its ability to colonize the spleen (Fig. 4A and B; P < 0.03). These results suggest that Orf2420 also plays a role in murine listeriosis.
Antibiotic resistance of
cesR,
cesK, and
orf2420 strains.
The ethanol resistance phenotypes observed for the cesR, cesK, and orf2420 in-frame deletion mutants suggested that either the cell membrane or cell wall integrity might be affected by the mutations. To address this possibility we compared the levels of resistance of wild-type and mutant strains to a variety of antibiotics by using a disk diffusion assay. No significant differences in inhibition zone sizes between wild-type and mutant strains were observed for a large range of antibiotics (gentamicin, erythromycin, streptomycin, rifampin, vancomycin, novobiocin, tetracycline, polymyxin B, colistin, minocycline, clindamycin, kanamycin, spectinomycin, fusidic acid, chloramphenicol, oxytetracycline; data not shown). However, in the presence of cell wall-acting antibiotics of the ß-lactam family, including ampicillin, penicillin G, and the cephalosporins, the
cesR and
cesK mutants were significantly more sensitive (Table 2). The most dramatic difference was observed for the cephalosporin cefuroxime. In this case, the size of the inhibition zone for the wild-type strain was 14.9 mm, whereas the inhibition zone sizes for the
cesR and
cesK strains were considerably larger (29.7 and 29.5 mm, respectively). No significant difference between the inhibition zone sizes of the wild-type strain and the
orf2420 strain was observed (Table 2). These results show that the CesRK two-component system plays an important role in the resistance of L. monocytogenes to antibiotics of the ß-lactam family.
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TABLE 2. ß-Lactam resistance of L. monocytogenes LO28 wild-type, cesR, cesK, and orf2420 strains
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cesR, and
cesK strains; and the specific ß-galactosidase activities were determined at various time points during growth. The expression of lmo2424-lacZ, lmo2423-lacZ, and cesR-lacZ was unaffected by the growth phase (data not shown). Moreover, the expression profile was identical in wild-type,
cesR, and
cesK strains. However, expression of orf2420 varied with the growth phase and reached a maximum in stationary phase (Fig. 5). Specifically, the ß-galactosidase activity in stationary phase was approximately 10-fold higher than the activity in early exponential growth phase. Furthermore, the activity of the orf2420-lacZ fusion was very low in
cesR and
cesK strains in all growth phases. The activity of orf2420-lacZ in the
orf2420 strain was comparable to the activity measured in wild-type cells, suggesting that Orf2420 does not affect its own expression (Fig. 5). These data show that the CesRK two-component system is responsible for the induction of orf2420 expression.
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FIG. 5. Transcription of orf2420 requires CesRK. The levels of expression of orf2420-lacZ in the wild-type (wt) strain and strains containing cesR, cesK, and orf2420 deletions were determined. Cells were grown in BHI medium. At various cell densities, the cells were harvested and subjected to ß-galactosidase assays.
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cesR cultures after 20 min of treatment with subinhibitory concentrations of cefuroxime or ethanol. Next, the expression of orf2420 was examined by primer extension analysis. In the wild-type strain, cefuroxime and ethanol were found to strongly induce transcription of orf2420 (Fig. 6A). Importantly, no induction of orf2420 was observed in the
cesR strain. This result strongly indicates that the CesRK two-component system responds to the presence of cefuroxime and ethanol in the growth medium.
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FIG. 6. Transcription of orf2420 is induced by ethanol, cell wall-acting antibiotics, and lysozyme. (A) Expression of orf2420 in response to ethanol and cefuroxime analyzed by primer extension. The analysis was performed with RNA purified from the cesR mutant strain (lanes 1 to 3) or the wild-type (wt) strain (lanes 4 to 6). Cells were grown in BHI medium to an OD600 of 0.3. The cell cultures were split and treated with 1% ethanol (lanes 1 and 4) or 4 µg of cefuroxime per ml (lanes 2 and 5) for 20 min. Controls without treatment were included (lanes 3 and 6). (B) Expression of orf2420-lacZ in response to various antimicrobial agents. The wild-type strain (black bars) and the cesR mutant strain (open bars) containing the orf2420-lacZ fusion were grown in BHI medium to an OD600 of 0.2. The cell cultures were split and treated with the indicated antibiotics for 1 h. Cell pellets were harvested and subjected to ß-galactosidase assays. The final concentrations of the antimicrobial agents in the medium were as follows: No addition, no antimicrobial agent; ethanol, 1%; cephalexin, 4 µg/ml; cefuroxime, 4 µg/ml; penicillin G, 0.05 µg/ml; ampicillin, 0.05 µg/ml; vancomycin, 0.1 µg/ml; bacitracin, 4 µg/ml; and D-cycloserine, 20 µg/ml. The data represent the means of three experiments, in which the observed variation did not exceed 10%. (C) Expression of orf2420-lacZ in response to lysozyme. The wild-type strain containing the orf2420-lacZ fusion was grown in BHI medium to an OD600 of 0.2. The cell culture was split and treated with the indicated concentration of lysozyme for 2 h. Cell pellets were harvested and subjected to ß-galactosidase assays. The data represent the means of three experiments, in which the observed variation did not exceed 10%.
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cesR strains carrying the orf2420-lacZ fusion were grow in BHI medium to an OD600 of 0.2. The cultures were split, and the potential inducers were added at subinhibitory concentrations. Cells were collected 1 h after the addition of the potential inducers and assayed for ß-galactosidase activity. In the absence of inducers, the specific activity of orf2420-lacZ in the wild-type strain was largely the same at an OD600 of 0.2 and 1 h later (OD600 = 0.4; Fig. 6B). The addition of 1% ethanol resulted in a dramatic induction of orf2420-lacZ expression (76-fold) in the wild-type strain (Fig. 6B). No induction of orf2420 was observed in the
cesR mutant strain (Fig. 6B). These results are consistent with the results of the primer extension analysis with orf2420 (Fig. 6A). Next, we tested the inducing capabilities of seven antibiotics targeting cell wall synthesis. Cephalexin, cefuroxime, penicillin G, ampicillin, vancomycin, bacitracin, and D-cycloserine strongly induced the expression of orf2420-lacZ, from 10-fold (bacitracin) to 95-fold (vancomycin), in a CesR-dependent fashion (Fig. 6B). Similar results were obtained for the
cesK strain (data not shown). Subinhibitory concentrations of the membrane-active compounds Triton X-100, Tween 20, and sodium dodecyl sulfate did not affect the expression of the orf2420-lacZ fusion, suggesting that they do not function as inducers (data not shown). Given that ethanol and a variety of cell wall-acting antibiotics induce the orf2420 promoter, we wished to determine whether the cell wall hydrolytic enzyme lysozyme was capable of acting as an inducer. Indeed, subinhibitory concentrations of lysozyme induced orf2420-lacZ expression in a dose-dependent manner (Fig. 6C). The induction was dependent on CesR and CesK (data not shown). Collectively, these data suggest that cell wall-acting antibiotics, ethanol, and lysozyme all generate a potent inducing signal sensed by the CesRK two-component system.
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We observed that the virulence potential of L. monocytogenes lacking the CesRK two-component system is reduced in comparison to that of the wild-type strain. Consequently, the target genes controlled by the CesRK two-component system may represent a collection of genes that are important for survival and persistence during an infection. In the present study, we have identified a gene regulated by CesRK. This target gene, orf2420, contributes to virulence in mice and decreases ethanol resistance. Interestingly, an open reading frame corresponding to orf2420 has not been defined in the avirulent species L. innocua, suggesting a specific role for Orf2420 in the virulence of L. monocytogenes (9). Although the sensitivity of the
orf2420 mutant to cell wall-acting antibiotics was not significantly affected, the transcription of orf2420 was highly induced in the presence of these agents in a CesRK-dependent manner. The increased expression of orf2420 in the presence of cell wall-acting antibiotics, ethanol, and lysozyme suggests that Orf2420 may play a role in the response to cell wall damage. Studies are ongoing in our laboratory to identify the role(s) of Orf2420 in the response to alterations of cell wall integrity.
The identification of orf2420 as a target gene for CesRK provided a tool for the identification of the signal sensed by CesRK. The level of transcription of orf2420 increases about 10-fold in a CesRK-dependent manner in L. monocytogenes cells going from the early exponential phase into the stationary growth phase, suggesting that a signal sensed by CesRK is generated though this growth phase transition. In E. coli, the peptidoglycan layer is known to undergo considerable changes upon entry into stationary phase (27). Furthermore, the antimicrobial agents that induce the transcription of orf2420 in a CesRK-dependent manner affect different stages of peptidoglycan synthesis (11, 19, 32). Thus, peptidoglycan appears to play an important role in the generation of the signal sensed by CesRK. Considering the diversity and broad specificity of the inducing factors, the actual signal sensed by the two-component system most likely accumulates as a consequence of some physical changes in the cell wall induced by these factors. The signal may be an intermediate in the biosynthesis or degradation of peptidoglycan; however, its true nature remains to be determined.
The opposite responses of the cesRK deletion mutants to ethanol and ß-lactam antibiotics is a paradoxical finding. In E. coli, growth in the presence of ethanol is known to result in the production of un-cross-linked peptidoglycan (19). The ß-lactam antibiotics prevent cross-linking of the peptidoglycan by binding to and inhibiting the activity of the penicillin-binding protein (PBP) transpeptidases (15). Both ethanol and ß-lactams induce the expression of orf2420 in a CesRK-dependent manner. However, the orf2420 gene mediates only ethanol sensitivity and not ß-lactam resistance, suggesting that other genes controlled by CesRK are involved in ß-lactam resistance, but not necessarily in ethanol sensitivity. Thus, different genes under the control of CesRK may promote ethanol sensitivity and ß-lactam resistance.
The cephalosporins are used in the medical treatment of bacterial meningitis; however, they have no effect in cases in which L. monocytogenes is the cause of disease. The reason for this natural resistance to cephalosporins is that they have only a low affinity for the primary lethal target for active ß-lactams in L. monocytogenes, PBP 3 (16, 38). The cephalosporins were, however, found to be good inhibitors of PBPs 1, 2, and 4 (38). The LisRK two-component system has recently been shown to mediate the resistance of L. monocytogenes to cephalosporins. In addition, LisRK contributes to the response to the lantibiotic nisin, ethanol, acid, and hydrogen peroxide stress; and it plays a significant role in the virulence potential of L. monocytogenes (6, 7). The similar roles played by LisRK and CesRK in mediating ethanol sensitivity and cephalosporin resistance may reflect a regulatory connection between the two signal transduction systems.
In the present study, we have identified a two-component system involved in the ability of L. monocytogenes to sense and respond to a variety of antimicrobial agents present in the environment, foods, and the infected host. Importantly, some of these agents are used therapeutically in the treatment of infections caused by L. monocytogenes and other human pathogens. It is becoming increasingly clear that a number of two-component systems of important bacterial pathogens, such as VanRS of Enterococcus faecalis (3), CiaHR and VncRS of S. pneumoniae (13, 24), and LisRK and CesRK of L. monocytogenes (7; this study), may indirectly contribute to the pathogenicity of these organisms by mediating resistance or sensitivity to antibiotics. Furthermore, CiaHR, LisRK, and CesRK play direct roles in virulence in mouse models, suggesting important roles for these systems in directly contributing to the infection process (6, 20, 34; this study). Further studies on such two-component systems will improve our understanding of how human pathogens sense and respond to commonly used antimicrobial agents and will provide a better understanding of the molecular mechanisms by which antimicrobial resistance may arise.
We thank Christina Kirkegaard for excellent technical assistance.
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