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Antimicrobial Agents and Chemotherapy, February 2003, p. 458-466, Vol. 47, No. 2
0066-4804/03/$08.00+0 DOI: 10.1128/AAC.47.2.458-466.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Michael Z. Hoemann,3,
James R. Hauske,3 and Ian Chopra2*
Department of Experimental Medicine, University of L'Aquila, Coppito-67100, L'Aquila, Italy,1 Antimicrobial Research Centre and Division of Microbiology, School of Biochemistry and Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom,2 Sepracor Inc., Marlborough, Massachusetts 017523
Received 28 May 2002/ Returned for modification 25 August 2002/ Accepted 31 October 2002
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Several new strategies to control staphylococcal infections have been considered in recent years. These include the use of antibiotic combinations (8, 36, 49), the development of new members of existing antibiotic classes (5, 15, 16, 24, 27), and the introduction of novel agents (28, 44). Novel classes will be particularly advantageous since such agents, with unique modes of action, are likely to circumvent existing resistance mechanisms (3). Recently, a novel structural class of antibacterials, the quinoline-indole (QI) agents, was discovered in a library of compounds generated by combinatorial methods (19). None of the compounds in this new structural class is active against gram-negative bacteria, but potent in vitro activity against several gram-positive species was demonstrated, including MRSA and GISA. We have now examined several members of this new class (Fig. 1) in more detail to determine their antistaphylococcal properties, potential for resistance development, and modes of action.
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FIG. 1. Structures of QI agents. Me, methyl.
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TABLE 1. Laboratory strains of S. aureus and E. coli
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Murine blood. Whole mouse blood treated with heparin was obtained from Harlan Sera Laboratories (Loughborough, United Kingdom).
Antimicrobial agents. The QI agents were prepared in the Discovery Group, Sepracor Inc. Imipenem was purchased as Primaxin from Merck Sharp & Dohme (Hoddesdon, United Kingdom). Ciprofloxacin, mupirocin, meropenem, fosfomycin, protegrin IB-367, and linezolid were gifts from Bayer AG (Leverkusen, Germany), SmithKline Beecham Pharmaceuticals (Harlow, United Kingdom), AstraZeneca (Alderley Park, Macclesfield, United Kingdom), Biochemie GmbH (Kundl, Austria), IntraBiotics Pharmaceuticals (Mountain View, Calif.), and Pharmacia and Upjohn Inc. (Kalamazoo, Mich.), respectively. The other antibiotics tested were purchased from Sigma-Aldrich (Poole, United Kingdom).
Chemicals. The following radiolabeled chemicals were purchased from Amersham Life Science (Little Chalfont, United Kingdom): [methyl-3H]thymidine (70 to 85 Ci/mmol), [5-3H]uridine (25 to 30 Ci/mmol), L-[3,4-3H]glutamine (20 to 50 Ci/mmol), [U-14C]glycine (>100 mCi/mol), [3H]acetic acid, sodium salt (87 mCi/mmol), and [5-3H]UTP (14 mCi/mmol). The BacLight kit (Molecular Probes, Inc., Eugene, Oreg.) for assessment of membrane damage was purchased from Cambridge Biosciences (Cambridge, United Kingdom). All other chemical and biochemical reagents were purchased from standard commercial sources.
Determination of susceptibility to antimicrobial agents. MICs were determined by agar dilution on MHA with inocula in MHB of 106 CFU/spot for S. aureus and 104 CFU/spot for E. coli (2). The MIC was defined as the lowest concentration of compound that completely inhibited visible growth after 18 to 24 h of incubation at 37°C.
Effects of antimicrobial agents on culture turbidity and bacterial viability. The turbidity at 600 nm of cultures growing in MHB was determined either manually by measurement of the absorbance in a Jenway 6105 UV/Vis spectrophotometer or automatically in a Molecular Devices Spectra Max Plus 384 microplate reader. The microplates were shaken and incubated at 37°C within the instrument. Studies to determine bactericidal activity were performed on exponential-phase cultures of S. aureus 8325-4. Samples were serially diluted in phosphate-buffered saline and plated onto MHA. The colonies were counted after incubation at 37°C for 18 to 24 h.
Measurement of PAE. In vitro postantibiotic effects (PAEs) were determined by the viable count method following removal of the antimicrobials by a 10-3 dilution (10). Organisms were exposed to five times the MIC for 60 min before washout. The PAE was calculated with the standard formula of Craig and Gudmundson (10): PAE = T - C, where T is the time required for the treated cells to increase 1 log10 CFU/ml after washout of the drug with fresh medium, and C is the time required for the nontreated control to increase 1 log10 CFU/ml after washout of the drug with fresh medium.
Determination of frequencies of mutation for resistance to antimicrobial agents. Determination of frequencies of mutation for resistance to antimicrobial agents was performed as described by O'Neill et al. (36) with Iso-Sensitest agar. Both standard and concentrated cell techniques were used, whereby mutation frequencies as low as 1 in 10-11 can be detected. Mutant colonies were normally counted after incubation of the plates for 24 h at 37°C. However, mutants resistant to ciprofloxacin were slow growing, and in this case colonies were quantified after 48 h of incubation.
Rates of bacterial lysis. First-order rate constants for bacterial lysis were calculated from culture absorbance data (600 nm) as described by Leduc et al. (25)
Macromolecular synthesis. DNA, RNA, protein, peptidoglycan, and lipid syntheses were monitored in mid-exponential-phase cultures of S. aureus 8325-4 (108 CFU/ml in MHB) by measurement of the incorporation of the radiolabeled precursors [methyl-3H]thymidine, [5-3H]uridine, L-[3,4-3H]glutamine, [U-14C]glycine, and [3H]acetic acid into macromolecular fractions as described previously (35, 48). Final concentrations were 1 µCi/ml for the 3H-labeled compounds and 0.1 µCi/ml for [U-14C]glycine. Precursors were added to cultures 3 min before the addition of antibiotics (at four times the MIC).
Bacterial membrane damage. The BacLight kit from Molecular Probes, Inc., was used to assess bacterial membrane damage as described by Hilliard et al. (18), with the exception that fluorescence readings were measured with a Perkin-Elmer LS 45 luminescence spectrometer.
Preparation of protoplasts. Protoplasts of S. aureus 8325-4 were generated with lysostaphin as described previously (4), with the exception that the buffer for protoplast preparation contained 50% (wt/vol) sucrose.
Hemolysis assays. Erythrocytes were recovered from murine blood as described by Fernandez-Lopez et al. (12), and hemolysis was measured by the spectrophotometric procedure of Lee and Oh (26). The hemolysis that occurred following the addition of 5% (wt/vol) sodium dodecyl sulfate (SDS) was defined as 100% hemolysis.
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1 µg/ml for MSSA and MRSA. Furthermore, the activities of the QI agents were comparable to or exceeded those displayed by vancomycin, linezolid, and quinupristin-dalfopristin against these clinical isolates and GISA. |
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TABLE 2. Antibacterial activities of QI agents and reference compounds against clinical isolates of S. aureus in MHA
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TABLE 3. Effects of QI agentsa on integrity of S. aureus 8325-4 grown in MHB
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FIG. 2. Effects of QI agents SEP 155342 ( ) and SEP 118843 ( ) at 10 times the MIC on S. aureus 8325-4 growth. Inhibitors were added to early-logarithmic-phase cultures in MHB at time zero. , control.
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FIG. 3. Effects of QI agents SEP 155342 at 10 ( ) and 20 ( ) times the MIC (A) and SEP 118843 at 10 ( ) and 20 ( ) times the MIC (B) on survival of S. aureus 8325-4. Inhibitors were added to early-logarithmic-phase cultures in MHB at time zero. , control.
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Activities of QI agents against antibiotic-hypersensitive E. coli mutants. QI agents are reported to have poor activities against E. coli (19). To determine whether this might result from exclusion by the outer membrane of the gram-negative organism, the activities of a representative bactericidal-lytic QI agent (SEP 155342) and a bactericidal-nonlytic QI agent (SEP 118843) against a number of E. coli permeability mutants were determined. Compared to wild-type organisms, QI agents SEP 155342 and SEP 118843 exhibited twofold increases in activity against some permeability mutants (data not shown). However, in other cases enhanced activities against permeability mutants were not demonstrated, even though these strains were more susceptible to fusidic acid and/or mupirocin, i.e., antibiotics normally excluded by the outer membrane (43).
PAEs of QI agents against S. aureus. PAEs were determined for a representative bactericidal-lytic QI agent (SEP 155342; Fig. 4A), a representative bactericidal nonlytic QI agent (SEP 118843; Fig. 4B), and rifampin as a control agent (data not shown). Cultures of S. aureus 8325-4 were exposed to 5 times the MIC for 60 min before washout, and PAEs were calculated as described in Materials and Methods. The PAE of QI agent SEP 155342 was 40 min, that of QI agent SEP 118843 was 35 min, and that of rifampin was 180 min. The PAE of rifampin is in agreement with the values for S. aureus from the literature (10).
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FIG. 4. PAEs in MHB induced by 60 min of exposure of S. aureus 8325-4 to five times the MICs of QI agents SEP 155342 ( ) (A) and SEP 118843 ( ) (B). Inhibitors were removed by dilution (10-3) at 60 min. , controls.
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TABLE 4. Spontaneous mutation frequencies of S. aureus 8325-4 to QI agents SEP 155342 and SEP 118843 and control agents using selecting concentrations of four times the MICs in Iso-Sensitest agar
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Two mutants that were resistant to QI agent SEP 118843 and that exhibited 64-fold increases in resistance were selected for determination of their susceptibilities to a range of other inhibitors. These included QI agent SEP 155342 and inhibitors of peptidoglycan synthesis (ampicillin, vancomycin, D-cycloserine, bacitracin), protein synthesis (chloramphenicol, erythromycin, streptomycin, tetracycline, fusidic acid, mupirocin), RNA synthesis (rifampin), and DNA synthesis (ciprofloxacin). The mutants resistant to QI agent SEP 118843 were not cross resistant to any of these agents, including the QI compound SEP 155342 (data not shown).
Kinetics and nature of lysis mediated by bactericidal-lytic QI agents. The bacteriolytic activity of QI agents such as SEP 155342 might result from inhibition of peptidoglycan synthesis since induction of lysis is characteristic of agents that specifically inhibit this biosynthetic pathway. We explored this possibility by comparing the kinetics and nature of QI agent-mediated lysis with those of known inhibitors of peptidoglycan synthesis including ampicillin, imipenem, meropenem, D-cycloserine, fosfomycin, and vancomycin, all of which promoted lysis of staphylococci when they were added to growing cultures.
The rates of lysis induced by QI agent SEP 155342 and the other antibiotics were calculated from culture absorbance data, as described in Materials and Methods. At four times the MIC the control inhibitors of peptidoglycan synthesis promoted lysis with first-order rate constants ranging from 1.2 x 10-3 units/min (vancomycin) to 14.5 x 10-3 units/min (meropenem) (Table 5). The rates of lysis for the bactericidal-lytic QI agents were concentration dependent (data not shown). However, QI agent SEP 155342 at 10 times the MIC achieved a lysis rate (12.3 x 10-3 units/min) comparable to the most rapid rate achieved by a control peptidoglycan biosynthetic inhibitor (meropenem at four times the MIC) (Table 5).
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TABLE 5. Lysis of S. aureus 8325-4 in MHB induced by various inhibitors and effect of preexposure to mupirocin
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The nature of the lytic responses mediated by QI agent SEP 155342 and the control antibiotics could also be distinguished from each other on the basis of their actions upon staphylococci expressing the stringent response. It is well known that E. coli becomes tolerant to inhibitors of peptidoglycan synthesis following induction of the stringent response (37, 47). This was confirmed for S. aureus by demonstrating that the control inhibitors of peptidoglycan synthesis completely failed to lyse cultures preexposed to mupirocin, a strong inducer of the stringent response (11, 48) (Table 5). In contrast, preexposure to mupirocin reduced the rate of lysis mediated by QI agent SEP 155342 to only about 50% of that observed in cells not treated with mupirocin (Table 5).
Macromolecular synthesis in cells exposed to QI agent SEP 155342. Since the lysis mediated by QI agent SEP 155342 and other lytic QI agents does not appear to result from specific inhibition of peptidoglycan synthesis, it might result from direct solubilization of the cytoplasmic membrane by detergent-like action. Prior to lysis, such agents usually cause simultaneous, nonspecific inhibition of several macromolecular biosynthetic pathways as a consequence of structural disorganization of the cytoplasmic membrane (18). To examine this possibility, QI agent SEP 155342 (at four times the MIC) was tested in five macromolecular synthesis assays involving the incorporation of radioactive precursors into DNA, RNA, protein, peptidoglycan, and lipid fractions. In each case a specific inhibitor (at four times the MIC) with a known mechanism of action was included as a positive control. The times taken to completely arrest the synthesis of the individual macromolecules following addition of inhibitors were determined from the radioactive incorporation data.
QI agent SEP 155342 completely prevented synthesis of all macromolecules within 8 min of its addition to staphylococcal cultures, and there was no evidence for specific inhibition of a single macromolecular pathway (data not shown).
Membrane damage following exposure to QI agent SEP 155342. The effects of QI agent SEP 155342 on macromolecular synthesis are consistent with a membrane-damaging activity for this compound. Bacterial membrane damage was initially examined by using the BacLight assay (Table 6). Exposure of cells to QI agent SEP 155342 (at four times the MIC for 10 min) altered the permeability of the cytoplasmic membrane, resulting in a normalized dye fluorescence ratio <20% of the control value obtained for cells not treated with antibiotics. Polymyxin B and protegrin IB-367 are both known bacterial membrane-disrupting agents that possess detergent-like activities (18, 41). As expected, these compounds caused severe membrane damage, in both cases decreasing the fluorescence ratio to about 10% of that for the untreated controls. A variety of other agents, including peptidoglycan biosynthesis inhibitors, mupirocin, tetracycline, and ciprofloxacin had little effect on membrane integrity since at most they reduced the fluorescence to about 85% of the control value for untreated cells (Table 6). Our results with positive and negative control agents agree with previously published data from studies in which the BacLight assay was used with S. aureus (18), but they further demonstrate that inhibitors of peptidoglycan synthesis (at four times the MIC) do not elicit membrane damage within 10 min of addition to staphylococcal cultures.
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TABLE 6. Effects of various agents on membrane integrity in S. aureus 8325-4 and hemolysis of murine erythrocytes
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FIG. 5. Effects of QI agent SEP 155342 at 10 times the MIC (8 µg/ml) ( ), QI agent SEP 118843 at 10 times the MIC (2 µg/ml) ( ), protegrin IB-367 at 10 times the MIC (8 µg/ml) ( ), rifampin at 10 times the MIC (0.5 µg/ml) ( ), and SDS (5% [wt/vol]) () on protoplasts of S. aureus 8325-4. , control
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Bacterial membrane damage following exposure to QI agent SEP 118843. Although the kinetics of macromolecular synthesis inhibition exhibited by QI agent SEP 118843 following exposure of staphylococci to that QI agent differed from the kinetics exhibited by QI agent SEP 155342, no evidence for preferential inhibition of a single macromolecular synthetic pathway by compound SEP 118843 was observed. Therefore, QI agent SEP 118843 might also be a membrane-damaging agent. This was confirmed by the BacLight assay, which demonstrated that exposure of S. aureus 8325-4 to QI agent SEP 118843 (at four times the MIC for 10 min) led to a fluorescence value <30% of that for the control (Table 6). However, QI agent SEP 118843 (at 10 times the MIC) did not cause complete lysis of S. aureus protoplasts since its addition to protoplast suspensions caused only a 15% reduction in absorbance over 60 min (Fig. 5).
Hemolytic activities of QI agents. On the basis of the results of the experiments described above, QI agents SEP 155342 and SEP 118843 both appear to interfere with bacterial membrane integrity without causing complete disruption of the prokaryotic membrane. The effects of these QI agents on murine erythrocytes at concentrations equivalent to four times the MIC for S. aureus 8325-4 were also examined. Compared to the hemolysis caused by SDS (5% [wt/vol]), QI agent SEP 155342 caused <25% hemolysis during a 60-min incubation and QI agent SEP 118843 was nonhemolytic (Table 6). Three agents, including polymyxin B, which are not reported to possess eukaryotic membrane-damaging activity (20, 39), were included as controls. As predicted, these agents failed to cause hemolysis of murine erythrocytes (Table 6).
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QI agents may have a role in the chemotherapy of staphylococcal infections since they demonstrated excellent antistaphylococcal activities, encompassing MSSA, MRSA, and GISA. Furthermore, these agents were bactericidal against S. aureus. The killing activity of QI agent SEP 118843 was particularly good, as it achieved a 1,000-fold reduction in viable organisms following exposure to the drug at 10 times the MIC for 2 h. On the other hand, the modest PAEs exhibited by the two representative QI agents studied here suggest that continuous dosing with these agents would probably be necessary (10). When new agents are being considered for development, it is important to establish their potential for resistance generation (29, 36). High frequencies of mutations for resistance to rifampin and fusidic acid as single agents have resulted in their use as combined agents for the treatment of staphylococcal infections to prevent the emergence of resistance to either agent (36). The frequencies of mutations for resistance to QI agents were lower than those for fusidic acid and rifampin and comparable to those for ciprofloxacin (Table 4). Since ciprofloxacin is used as a single agent, QI agents clearly have the potential to be used alone rather than in combination with other agents.
It is clear that QI agents can be divided into two subclasses, i.e., those responsible for a bactericidal-lytic response and those that mediate nonlytic killing. Further support for the existence of two subclasses is provided by the observation that mutants resistant to QI agent SEP 118843 (bactericidal-nonlytic) were not cross resistant to QI agent SEP 155342 (bactericidal-lytic). Lysis of bacteria results from one of the following mechanisms: (i) direct interference with peptidoglycan synthesis followed by autolysis (37), (ii) direct solubilization of the cytoplasmic membrane by a detergent-like action (13), or (iii) membrane deenergization leading to autolysis (22).
Lytic QI agents like SEP 155342 are unlikely to mediate their effects by the first mechanism since there was no evidence for specific inhibition of peptidoglycan synthesis by this agent. Moreover, lytic QI agents promoted the rapid lysis of S. aureus, in contrast to the delayed lytic response observed with known inhibitors of peptidoglycan synthesis. Finally, the rate of bacterial lysis induced by QI agent SEP 155342 was only partially affected by prior exposure to mupirocin, whereas lysis mediated by known peptidoglycan biosynthesis inhibitors was completely blocked by mupirocin, an agent that induces the stringent response through production of ppGpp (11, 48). Our results on the effects of peptidoglycan biosynthesis inhibitors on staphylococci are consistent with those from earlier reports demonstrating tolerance to these agents during stringency in E. coli (37, 47) and further illustrate that the mechanism of QI agent-mediated lysis differs from that promoted by classical inhibitors of peptidoglycan synthesis.
The rapid lysis of bacterial protoplasts by an antimicrobial agent provides good evidence that it solubilizes the cytoplasmic membrane directly by a detergent-like activity (13, 22). However, QI agent-mediated lysis by the second mechanism described above, i.e., the result of detergent-like activity, is unlikely since SEP 155342 failed to lyse staphylococcal protoplasts under conditions in which SDS and protegrin IB-367 destroyed their integrity. The activity of SDS as a detergent is well known, and bacterial membrane disruption appears to be the primary mode of action of protegrin IB-367 (41).
Although we do not have direct evidence that lytic QI agents cause membrane deenergization, we nevertheless favor the view that these QI agents probably mediate their effect by the third mechanism described above, i.e., membrane deenergization leading to autolysis. Membrane-depolarizing agents cause rapid, nonspecific inhibition of macromolecular synthesis in bacteria (14, 18, 34) and lead to membrane damage detectable by the BacLight assay, which involves the differential uptake of the fluorescent stains SYTO-9 and propidium iodide (18). QI agent SEP 155342 exhibited both properties described above; i.e., it causes rapid nonspecific inhibition of macromolecular synthesis and promotes membrane damage detectable by the BacLight assay within 10 min of addition to staphylococci. The molecular target for QI agent SEP 155342 and other bactericidal-lytic QI agents is unknown. However, the ability to recover mutants resistant to QI agent SEP 155342 at frequencies of 10-9 is consistent with inhibitor interaction at a single target site (30) that is presumably located on the membrane.
The mode of action of nonlytic bactericidal QI agents such as SEP 118843 is intriguing. Although the pattern of inhibition of macromolecular synthesis differed from that exhibited by QI agent SEP 155342, no evidence for specific inhibition of an individual biosynthetic pathway was obtained, suggesting the possibility that antimicrobial activity resulted from membrane damage. Indeed, the membrane damage induced by QI agent SEP 118843 was detected by the BacLight assay but not the protoplast lysis assay. Taken together, these data suggest that the activities of nonlytic QI agents also result from interference with bacterial membrane function. However, the reason that they are unable to promote bacterial lysis is unclear. Nevertheless, the existence of two separate classes of QI agents suggests the possibility that the different responses reflect an interaction with separate membrane targets. This is consistent with the observation that mutants resistant to QI agent SEP 118843 were not cross resistant to QI agent SEP 155342.
Since early members of the QI series demonstrated poor activities against gram-negative bacteria (19), it could be postulated that the molecular targets for the actions of QI agents reside only in gram-positive bacteria. However, we noted that a representative bactericidal-lytic QI agent (SEP 155342) possessed weak activity against wild-type E. coli which was further enhanced in some permeability mutants. Furthermore, even though representative bactericidal-nonlytic QI agent SEP 118843 had no activity against wild-type E. coli, some permeability mutants also displayed enhanced susceptibility to this agent. Thus, it can be concluded that the poor activities of QI agents against gram-negative bacteria probably results from poor uptake across the cell envelope of gram-negative bacteria rather than an absence of molecular targets in gram-negative bacterial species.
The structure-activity relationships that divide QI agents into the two subclasses are complex, and precise structure-activity relationships have not been established. The structures of QI agents SEP 155342 and SEP 118843 are illustrated in Fig. 1, from which it can be seen that the nature of the substituents at positions 2, 4, 6, and 7 of the quinoline nucleus differ for the two molecules. The activities of SEP 155342 and other lytic QI agents were usually associated with substitution of a basic amine at position 4 of the quinoline nucleus, with or without a propargyl amine in the 6 position (Fig. 1). Neither the nature of the halogen (Cl, Br) on the indole moiety nor the presence or absence of a halogen atom at position 7 of the quinoline nucleus had any influence on lytic activity. In contrast, the nonlytic QI agents usually contained an aromatic ring, with or without a methoxy substituent, at position 4 of the quinoline nucleus (Fig. 1). The nonlytic QI agents possessed either a Cl or a Br in the indole moiety and either possessed or did not possess a propargyl amine in the 6 position of the quinoline nucleus (Fig. 1).
The QI agents described in this paper appear to interact with targets located in the staphylococcal membrane. Although very few antibiotic classes with membrane-active properties have been developed for clinical use, this does not necessarily preclude the development of QI agents as clinical candidates. This applies especially to nonlytic QI agents which, on the basis of the hemolysis data reported here, may interact with a bacterial target not found in mammalian membranes. There is growing interest in the development of membrane-active agents for application as antibiotics (12, 32, 44). QI agents may be further examples of bacterial membrane-active agents worthy of consideration for development.
We thank W. Stubbings, A. Hoyle, and J. Hurdle for technical assistance.
Present address: Laboratory for Drug Discovery, Harvard Center for Neurodegeneration and Repair, Cambridge, MA 02139. ![]()
Present address: Biogen Inc., Cambridge, MA 02142. ![]()
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