Previous Article | Next Article ![]()
Antimicrobial Agents and Chemotherapy, December 2004, p. 4636-4642, Vol. 48, No. 12
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.12.4636-4642.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Pediatrics, Emory School of Medicine, and Veterans Affairs Medical Center, Decatur,1 Pharmasset Inc., Tucker,2 College of Pharmacy, University of Georgia, Athens, Georgia3
Received 20 April 2004/ Returned for modification 26 June 2004/ Accepted 17 August 2004
|
|
|---|
|
|
|---|
ß-D-N4-Hydroxycytidine (NHC), a base-modified ribonucleoside analogue, was identified as a potent and selective anti-HCV candidate (19). In a bovine viral diarrhea virus infection system and in HCV replicon RNA in Huh-7 cells, NHC had 90% effective concentrations (EC90) of 2 and 5 µM, respectively (19). NHC was nontoxic (50% inhibitory concentration, >100 µM) in the HCV replicon system (clone A cells, genotype 1b), Huh-7 cells, HepG2 cells, and human peripheral blood mononuclear cells (19). Levels of mitochondrial DNA and RNA or lactic acid in HepG2 cells treated with NHC did not change, suggesting no delayed toxicity (19). Although the antiviral mechanism of action of NHC is not completely understood, its nucleotide may act as a weak alternative substrate for CTP in the HCV RNA polymerization reaction (19). Based on studies with the viral RNA polymerase, we speculate that the incorporation of NHC-5'-monophosphate (NHC-MP) into viral RNA has the capacity to change the thermodynamics of regulatory secondary structures (with or without introducing mutations) and that nucleoside analogues such as NHC may represent an important class of new antiviral agents for the treatment of RNA virus infections, especially HCV (19).
In order to advance its preclinical development, it was important to investigate the metabolism of [3H]NHC in various liver cells, including clone A cells, Huh-7 cells, HepG2 cells, and primary human hepatocytes. This could provide insight into its metabolism and the intracellular half-life (t1/2) of the active metabolite NHC-5'-triphosphate (NHC-TP). We also determined the stability of NHC in monkey and human whole blood as a prelude to studies with primates.
|
|
|---|
Cell culture systems. The human hepatocellular carcinoma cell lines HepG2 and Huh-7 were obtained from the American Type Culture Collection (Manassas, Va.) and maintained in a 75-cm2 flask in Dulbecco's modified Eagle's medium supplemented with 4.5 g of glucose/liter and sodium pyruvate (MediaTech Inc., Herndon, Va.), 10% (vol/vol) heat-inactivated fetal bovine serum, and 1 mM penicillin G-streptomycin sulfate. All cell lines were grown at 37°C in a 5% CO2-95% air atmosphere. The medium was replenished every 3 days, and cells were subcultured once a week.
Primary human hepatocytes and medium were obtained from In Vitro Technologies (Baltimore, Md.). The HCV replicon RNA clone A system in Huh-7 cells was provided by Apath, LLC (St. Louis, Mo.).
Digestion of cellular extracts with alkaline phosphatase. HepG2 cells (1 x 106 to 1.8 x 106 per well) were resuspended in a final volume of 1.5 ml per time period and exposed to 10 µM [3H]NHC (500 dpm/pmol) for specific time periods. The cells were maintained at 37°C under a 5% CO2-95% air atmosphere. Intracellular metabolites were extracted as described below. Cell extracts from HepG2 cells that had been incubated with tritiated NHC were treated with 1.0 U of alkaline phosphatase per 106 cells (cat. no. P-6772; Sigma) at 37°C overnight. The samples were analyzed by reverse-phase high-performance liquid chromatography (HPLC).
LC-tandem MS (MS-MS) system conditions. Nucleotides are not expected to be retained on conventional reverse-phase HPLC columns. To obtain a good separation, phosphate buffer (4, 5, 9) or ion-exchange chromatography (18) is used in LC-UV visible light detection of nucleotides. However, in electrospray ionization-mass spectrometry (MS), a low concentration of nonvolatile salts can markedly decrease the MS sensitivity and even prevent ionization (7). Therefore, the challenge was to select an ion-pairing agent that did not cause interference in MS detection of the nucleotides. Thus, the first criterion in selecting an appropriate ion-pairing agent was to ensure that the nucleotides were retained and separated on a reversed-phase HPLC column. According to the literature (2, 8, 17), the best results for ion pairing are obtained with DMHA. First, the pure compounds were infused into the eluent mixture (ratio of mobile phase A to mobile phase B, 40:60 [vol/vol]; 1 µg/ml) at 10 ml/min to determine the optimum ionization mode. As expected for the nucleotide studies, the negative mode was chosen.
We used a Hypersyl BDS C8 column (4.6 by 150 mm, 5 µm; Phenomenex, Torrance, Calif.) as the analytical column and guard pack precolumn. A Waters LC system (controller 600 and UV photodiode array detector 996) was used for this analysis. Mobile phase A was composed of acetonitrile-water (8/2) and had a pH of 7 (adjusted with 5 mM DMHA and acetic acid), and mobile phase B was composed of water and 25 mM DMHA and had a pH of 7 (adjusted with acetic acid). Forty microliters of each sample was injected by use of an autosampler (model 717; Waters). Elution was performed using a linear gradient from 0 min (with A at 5%) to 5 min (with A at 10%), 5 to 30 min (with A at 30%), and 30 to 40 min (with A at 40%) at a flow rate of 1 ml/min.
The MS system used was a Finnigan TSQ 7000 (ThermoFinnigan, San Jose, Calif.), operating in electrospray ionization negative-ion mode. The MS parameters were optimized on the pure CTP, UTP, and NHC-TP. Nitrogen was used as both the sheath and auxiliary gases at pressures of 80 and 20 U, respectively. The spray voltage and the capillary temperature were set at 4.5 kV and 300°C, respectively. Collision-induced dissociation (CID) of the parent ions was performed in the collision cell (Q2) with argon gas at 2 torr and with collision energy optimized for each compound, producing the highest abundance of product ions in Q3. Because a high concentration of DMHA was used, the MS source and the whole LC column were regularly cleaned with eluent at the end of each day with 50/50 water-methanol.
Nucleoside accumulation studies. For these studies, Huh-7 cells, clone A cells, HepG2 cells, and primary human hepatocytes (1.5 x 106 to 2.5 x 106 per well in a six-well plate) were resuspended in a final volume of 1.5 ml of culture medium per time period and exposed to 10 µM [3H]NHC (500 dpm/pmol) for specific time periods (1, 2, 4, 8, and 24 h). The cells were maintained at 37°C under a 5% CO2-95% air atmosphere. Intracellular metabolites were extracted as described below.
Determination of intracellular NHC-TP t1/2s. Huh-7 cells (2.5 x 106 per well of a six-well plate) were incubated with 10 µM [3H]NHC (500 dpm/pmol) for a period of 24 h at 37°C in a 5% CO2 atmosphere. The cells were then washed three times with drug-free medium to remove extracellular NHC and incubated with regular culture medium for specific time periods (0, 1, 2, 4, 8, and 24 h). Intracellular metabolites were extracted as described below.
Determination of intracellular metabolites. At selected times for NHC-TP accumulation or for the determination of NHC-TP t1/2 study time points, extracellular medium was removed and the cell layer was washed with cold phosphate-buffered saline. After cell scraping with 60% methanol (1 ml), NHC and its respective metabolites were extracted by incubation overnight at 20°C, and then samples were centrifuged at 14,000 rpm (Eppendorf centrifuge model 5415C) for 5 min and supernatant was collected. This was followed by extraction for 1 h on ice the next day (200 µl with 60% methanol), and samples were centrifuged again at 14,000 rpm (Eppendorf centrifuge model 5415C) for 5 min. Extracts were combined, dried under a gentle filtered airflow, and then stored at 20°C until they were analyzed by HPLC. Residues were resuspended in 200 µl of water, and aliquots were injected into the HPLC column.
Stability study of NHC in monkey and human whole blood. Ten micromolar [3H]NHC (1,000 dpm/pmol) was incubated in either monkey or human blood for different periods of time (0, 0.08, 0.16, 1, 2, 4, and 24 h). At a selected time point, an aliquot of 200 µl was taken and centrifuged at 14,000 rpm (Eppendorf centrifuge model 5415C) for 5 min. The supernatant was collected, and 500 µl of acetonitrile was added and mixed. The sample was recentrifuged at 14,000 rpm for 5 min, and the supernatant was dried using a DNA speed vacuum (model DNA 110; Savant Instrumental Inc., Farmingdale, N.Y.). Residues were resuspended in 200 µl of water, and aliquots were injected into the HPLC column.
HPLC analysis. NHC and metabolites were separated by reverse-phase HPLC with a Columbus 5-µm-diameter C18 column (Phenomenex, Torrance, Calif.) using a Pro Star model 210 HPLC with manual injection (Varian, Walnut Creek, Calif.). The mobile phase consisted of buffer A (25 mM ammonium acetate with 5 mM TBAP [pH 7.0]) and buffer B (methanol). Elution was performed using a multistage linear gradient of buffer B from 0 to 5% during the first 5 min and then by leveling the buffer to 5% until 10 min at a constant flow of 0.8 ml/min had passed. The elution flow was then increased to 1 ml/min, and the gradient of buffer B was increased from 5 to 15% at 20 min and reached 20% at 35 min; it was kept stable from 35 to 45 min, raised to 30% at 50 min, and finally increased by 5% every 5 min until 60 min had passed. Radioactivity was analyzed with a 500TR Radiometric Flo-One radiochromatography analyzer (Perkin Elmer, Life and Analytical Sciences, Wellesley, Mass.). NHC and the respective metabolites were identified by comparing their chromatographic profiles with those of authentic standards and by enzymatic digestion of whole-cell extracts with alkaline phosphatase.
|
|
|---|
![]() View larger version (16K): [in a new window] |
FIG. 1. HPLC radiochromatograms of intracellular extracts from clone A cells following addition of 10 µM [3H]NHC for 4 h (A) and after digestion with alkaline phosphatase (B) (see Materials and Methods). Metabolites were separated by reverse-phase HPLC with a Columbus 5-µm-diameter C18 column (Phenomenex) using a Pro Star model (Varian) with manual injection. The mobile phase consisted of buffer A (25 mM ammonium acetate with 5 mM TBAP, pH 7.0) and buffer B (methanol). Elution was performed using a multistage linear gradient of buffer B.
|
|
View this table: [in a new window] |
TABLE 1. Uptake of 10 µM [3H]NHC (500 dpm/pmol) in liver cells at different time points
|
LC-MS-MS analysis. The retention times of the standard compounds were as follows: 32.6 min (NHC-TP), 32.8 min (CTP), and 33.6 min (UTP). The maximum wavelengths at a pH of 7 for NHC-TP, CTP, and UTP were 236.8, 272.1, and 262.7 nm, respectively.
Using LC-MS-MS technology, the following fragmentation schemes were obtained for the following triphosphates: for CTP, m/z 481.6 to 402.1, 383.7, 158.8 with CID 30 eV; for UTP, m/z 482.6 to 402.3, 385.3, 176.9, 158.8 with CID 30 eV; and for NHC-TP, m/z 497.5 to 399.9, 158.7 with CID 30 eV.
The same LC-MS-MS conditions were applied to the Huh-7 cell extracts. Three injections of the same Huh-7 sample were necessary to obtain the fragmentation schemes of the two unknown metabolites, peaks 7 (retention time,
60 min) and 9 (retention time,
64 min) (Table 1; Fig. 1A).
After the characterization of cytidine and uridine as principal metabolites of NHC (Fig. 1B), LC-MS-MS was used for the identification of peaks 7 and 9 from the cell extracts. After the conditions were set, cold cell extract samples were injected and the peaks were identified as CTP (peak 7), NHC-TP (peak 8), and UTP (peak 9). Since the alkaline phosphatase digestion indicated the presence of cytidine and uridine, the unknown peaks 1, 3, 4, and 6 were characterized with authentic unlabeled standards of MP and DP of cytidine and uridine based on their masses, fragmentation patterns, and metabolism patterns (Table 1).
These results illustrate that NHC is metabolized in the cytoplasm of the liver cells to corresponding NHC-MP, NHC-DP, and NHC-TP; in addition, the different metabolites of cytidine and uridine MP, DP, and TP were also detected.
Uptake of NHC in liver cells. Uptake studies were conducted with different cell lines in triplicate to determine the levels of all intracellular metabolites of radiolabeled NHC. Primary human hepatocytes, clone A, Huh-7, and HepG2 cell lines were incubated with 10 µM [3H]NHC (500 dpm/pmol) for different time points at 37°C. For discussion purposes, the 4-h time point instead of the 8-h time point was chosen when most of the nucleoside triphosphate metabolites reached the maximum concentration in liver cell lines (Table 1). Metabolites corresponding to NHC-TP reached intracellular concentrations of 41.7 ± 11.7, 48.3 ± 14.3, 72.4 ± 30.3, and 7.8 ± 0.5 pmol/106 cells (means ± standard deviations) at 4 h of incubation in clone A cells, Huh-7 cells, HepG2 cells, and primary human hepatocytes, respectively.
CTP and UTP (derived from NHC) achieved concentrations of 12.6 ± 1.3 and 7.2 ± 6.1 pmol/106 cells in clone A cells, 18.7 ± 4.2 and 78.7 ± 15.3 pmol/106 cells in Huh-7 cells, and 10.5 ± 0.8 and 36.2 ± 5.6 pmol/106 cells in HepG2 cells, respectively, at 4 h. In primary human hepatocytes, CTP and UTP reached the maximum concentrations of 6.0 ± 0.9 and 33.7 ± 3.8 pmol/106 cells, respectively, by 4 h.
Determination of intracellular NHC-TP t1/2s. The t1/2 of NHC-TP was measured in Huh-7 cells (Fig. 2) and was at least 3 h, with the concentration reaching to 2.7 ± 0.0 pmol/106 cells at 8 h after removal of the respective parent drug. The t1/2s of the other two radioactive nucleotide triphosphates, CTP and UTP, derived from radiolabeled NHC incubation, were found to be 10.4 ± 3.3 and 13.2 ± 3.5 h, respectively.
![]() View larger version (10K): [in a new window] |
FIG. 2. Decay of [3H]NHC-TP metabolites after incubation of Huh-7 cells for 24 h (10 µM). TP t1/2 values for cytidine, NHC, and uridine were 10.4 + 3.3, 3.0 + 1.3, and 13.2 + 3.5 h, respectively (n = 3). The exponential rates of decline ( ) for NHC-TP, UTP, and CTP were calculated as the slope of the natural logarithm of the respective concentrations versus time by using the terminal linear portion of the curve. The t1/2 of decay was determined to be 0.693/ .
|
|
View this table: [in a new window] |
TABLE 2. Stability study of 10 µM [3H]NHC (1,000 dpm/pmol) in monkey and human whole blood
|
|
|
|---|
Uptake studies of NHC indicated rapid phosphorylation and high NHC-TP, CTP, and UTP levels in clone A, Huh-7, HepG2 cells, and primary human hepatocytes after 4 h of incubation. In clone A cells, NHC-TP was the predominant metabolite up to 8 h. At 8 h, CTP and UTP reached similar levels, and by 24 h, UMP, UTP, and CTP were the predominant metabolites (Table 1). Although the Huh-7 cell line is the parental cell line of clone A cells, the maximum UTP intracellular concentration was attained earlier at 2 h. From 8 to 24 h, the intracellular concentrations of NHC-TP and UTP were similar. In the HepG2 cell line, NHC-TP was the predominant metabolite from 4 to 24 h, but at early times, UTP levels were higher. Primary human hepatocytes incubated with tritiated NHC phosphorylated this nucleoside rapidly, but up to 24 h, one of the predominant metabolites was UTP, reaching levels of 106.8 ± 20.1 pmol/106 cells at 24 h (Table 1).
Recently, Stuyver and colleagues (19) determined that the EC90 of NHC in the replicon system was 5 µM. In our uptake studies, at 1 h, NHC-TP, the active metabolite, was formed in Huh-7 and clone A cells at levels equivalent to 2 to 10 times higher than the EC90s in the replicon system. However, as radiolabeled NHC was incubated for up to 8 h, the level of NHC-TP increased in all the liver cell lines described in this paper, including in primary human hepatocytes. For example, in primary human hepatocytes, NHC-TP achieved levels of 7.8 pmol/106 cells, which is higher than the in vitro EC90 in the replicon system. However, it should be noted that these cells were bought in plates and were near confluence when they were used for these uptake studies. This may explain the relatively lower levels of NHC-TP formed in primary human hepatocytes than in rapidly dividing Huh-7, clone A, and HepG2 cells (Table 1).
The higher intracellular levels of UTP are explained in Fig. 3, which shows how radioactive NHC was transformed to cytidine and uridine by different pathways. Cytidine was also deaminated to uridine, which was then phosphorylated to its MP, DP, and TP forms. In the four liver cell systems, CTP showed the lowest intracellular concentration compared to those of NHC-TP and UTP, probably because cytidine is not only phosphorylated, but also deaminated to uridine.
![]() View larger version (13K): [in a new window] |
FIG. 3. Proposed metabolism for NHC in liver cells.
|
Stability studies of radiolabeled NHC in monkey and human whole blood suggested that this compound might not persist long enough in plasma at a physiological pH and temperature to deliver significant antiviral levels of NHC into HCV-infected liver cells. The predominant and first metabolite found in monkey and human blood was uridine. Although detectable or moderate concentrations of cytidine, a product of NHC reduction, were found, uridine was the most prevalent metabolite. The high percentage of uridine in monkey and human blood up to 24 h and its rapid detection suggest that NHC can be oxidized and reduced by different pathways.
The high levels of uridine and its metabolites can be explained by analyzing the data from the stability study of monkey and human blood and the uptake of NHC in human liver cells. The data suggest that NHC is converted to uridine and also to cytidine, which is then deaminated to uridine. Both pathways contribute to the intracellular concentrations of uridine and its metabolites.
The deamination mechanism of nucleosides in different species has been described previously (3, 10). Those reports are consistent with our results where deamination in monkey blood is higher than in human blood, in which NHC is more stable, with a t1/2 of 17.9 h, compared to 3.9 h in monkey blood.
The finding of high levels of these metabolites in cells exposed to NHC could have implications, since earlier studies suggest that uridine and cytidine may prevent the anti-HCV activity of NHC (19). In addition, production of these metabolites may create feedback inhibition, reducing the absolute levels of NHC-TP.
A proposed metabolic pathway is shown in Fig. 3. Based on kinetic studies, the first metabolite formed after the incubation of NHC in monkey and human blood was uridine, and the second was cytidine. Radiolabeled NHC, cytidine, and uridine in monkey plasma had intracellular t1/2s of 3.9, 0.9, and 4.9 h, respectively. In human plasma, NHC and uridine had t1/2s of 17.9 and 6.9 h, respectively. The short intracellular t1/2 of NHC-TP supports the proposed deamination and oxidation of NHC (Fig. 3), since the incubation of radiolabeled NHC led to the formation of cytidine and uridine MPs, DPs, and TPs. Early studies with NHC in growing cells of Salmonella enterica serovar Typhimurium support the proposed metabolic pathway (14, 15). It was demonstrated that a bacterial enzyme system was capable of transforming NHC to cytidine by direct deamination.
As demonstrated in this paper, incubation of [3H]NHC in various liver cells leads to its phosphorylation and to the cytidine and uridine MPs, DPs, and TPs. The levels of NHC-TP in both the clone A cells used in the replicon system and primary human hepatocytes were in excess of the EC90 for inhibition of HCV at 4 h after cell exposure to radioactive NHC.
Taken together, these results suggest that similar metabolisms may occur in animals and humans. Thus, approaches to prevent the oxidation or reduction of NHC should be a priority for advancing this nucleoside to the clinic. Based on these studies, it is also apparent that N4-hydroxypyrimidine nucleosides could be used as prodrugs for sugar-modified cytosine and uracil nucleoside analogues. Such prodrug approaches are currently being developed in our laboratories for a variety of new antiviral agents.
R.F.S. is the principal founder of and a scientific consultant to Pharmasset Inc., and his particulars have been reviewed by Emory University's Conflict of Interest Committee. His group received no funding from Pharmasset or any other company to perform this work.
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»