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Antimicrobial Agents and Chemotherapy, February 2004, p. 453-459, Vol. 48, No. 2
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.2.453-459.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Division of Infectious Diseases, San Francisco General Hospital, University of California, San Francisco, California
Received 31 May 2003/ Returned for modification 25 July 2003/ Accepted 8 October 2003
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K237 within the non-penicillin-binding domain and V
E470 near the SDN464 conserved penicillin-binding motif in the penicillin-binding domain in COL52, were important for high-level resistance. The highest level of resistance was observed when all four mutations were present. The emergence of PBP 2a-mediated resistance to beta-lactams that bind to PBP 2a with a high affinity is likely to require multiple mutations in mecA; chromosomal mutations appear to have a minor role. |
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Several cephalosporin and carbapenem derivatives that bind to PBP 2a with 100-fold or higher affinities than those of other beta-lactams and which are active in vitro and in vivo against methicillin-resistant staphylococci have been synthesized (2, 6, 7, 13, 20). These compounds have in common a relatively extended side chain attached to the
ring of the beta-lactam compound core (3, 16). This structural feature permits the molecule to be positioned within the groove in such a way that the acylation reaction proceeds at a rate more rapid than that in its lower-affinity relatives. Two of these compounds, BAL 9141 and RWJ 54428, have been tested in phase I trials with humans (7, 17). It is quite likely that within the next few years a PBP 2a-binding beta-lactam will become available for clinical use. Given the proficiency demonstrated by methicillin-resistant strains of staphylococci in acquiring resistance to literally any and every antimicrobial and because of cross-resistance among beta-lactam antibiotics in particular, there is concern that resistance will rapidly develop once these investigational agents become available. A famous property of methicillin-resistant staphylococci is their ability to develop high-level resistance upon exposure to beta-lactams to which they are apparently susceptible in vitro (4). Ryffel et al. (18) have reported that the high-level resistance expressed by the minority population of methicillin-resistant staphylococci was due to a chromosomal mutation(s) (chr*) located outside of mecA, the gene encoding PBP 2a. To assess this potential for the emergence of resistance, experiments were conducted to investigate the mechanism of resistance in COL52, a mutant of homogeneous methicillin-resistant Staphylococcus aureus (MRSA) strain COL obtained by repeated passage in the presence of L-695,256, an investigational carbapenem with a high affinity of binding to PBP 2a (2).
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1.0 µg/ml), and in agar plating assays COL52 grows in the presence of L-695,256 at concentrations up to 40 µg/ml. COL52 PBP 2a is not detectable by fluorography with [3H]penicillin at concentrations up to 50 µg/ml (concentrations of 10 to 15 µg/ml can be used to label PBP 2a in COL) (5). |
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TABLE 1. Strains and plasmid vectorsa
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mecA-negative S. aureus variants were constructed from mecA-encoding strains by introducing temperature-sensitive plasmid pSR2 into them. pSR2 contains ccrA and ccrB genes encoding recombinases that precisely excise SCCmec from the chromosome (14). The "ex" suffix designates an S. aureus variant from which mecA has been excised (e.g., COLnex is the mutant of COLn from which SCCmec has been excised). RN4220 is a naturally mecA-negative methicillin-susceptible S. aureus (MSSA) strain that is a restriction-deficient derivative of NCTC8325-4 (15, 17).
All S. aureus strains and transformants were cultivated in Trypticase soy broth or Trypticase soy agar (Difco Laboratories, Detroit, Mich.) with aeration, unless indicated otherwise. Tetracycline (Sigma Chemical Co., St. Louis, Mo.) was used at a concentration of 10 µg/ml. Nafcillin (Sigma) was used for population analysis.
Plasmids and DNA manipulations.
For the transformation experiments, mecA of strain COLn or COL52 was cloned into the BamHI site of S. aureus plasmid pAW8 or pAW10; pAW8 and pAW10 are Enterococcus faecalis-Escherichia coli shuttle vectors with selectable markers for tetracycline resistance (23). The primers used in this study are shown in Table 2, and the locations of the sequences of the six primers used for plasmid constructions are indicated in Fig. 1. The mecA product, including its promoter and the first 223 nucleotides of mecR1 on pYK20COLn or pYK21COL52, was obtained by PCR amplification of COLn or COL52 mecA with primers K34 and K38 and 1 U of Clontaq polymerase (Clontech, Palo Alto, Calif.). Plasmids pYK26, pYK27, pYK28, and pYK29 were constructed by establishment of site-directed point mutations by PCR (24). For the first round of PCR, we amplified two PCR fragments with two sets of primers for each plasmid: primers K34 and K237rc for COL52 DNA, primers K237 and K38 for COLn(pYK26) DNA, primers K34 and E470rc for COL52 DNA, primers E470 and K38 for COLn(pYK27) DNA, primers K34 and E470rc for COLn DNA, primers E470 and K38 for COL52(pYK28) DNA, primers K34 and K237rc for COLn DNA, and primers K237 and K38 for COL52(pYK29) DNA. A second round of PCR was performed with primers K34 and K38 and by use of the two fragments amplified from each plasmid as templates. Each amplified fragment was digested with the BamHI restriction enzyme and then cloned into pAW10. All plasmids were isolated from E. coli DH5
by standard procedures, and the amplified DNA was sequenced (sequencing was performed by the University of California, San Francisco, Biomolecular Resources Center DNA sequencing facility) to confirm the absence of any unwanted mutations. The strains were transformed with plasmids by electroporation (14). After a 48-h incubation the transformants were tested for mecA by PCR amplification with the K34-K38 primer pair.
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TABLE 2. Synthetic oligonucleotides primers in mecA genea
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FIG. 1. Structural map of PBP 2a in strains COLn and COL52 and positions of the substituted amino acid sequences on the six plasmids. The arrows in the map of PBP 2a indicate the direction of mecA transcription. The striped, white, and gray regions indicate the transmembrane anchor, the nPBD, and the transpeptidase domain, respectively. The locations of three penicillin-binding motifs in the penicillin-binding (transpeptidase) domain are indicated by black lines. The amino acid mutations in PBP 2a of strain COL52 are indicated by dotted lines. The positions of the primers for PCR amplification are indicated by arrowheads. The table at the bottom shows the mutations, indicated by a plus sign, present in the plasmid constructs used to express wild-type or mutant PBP 2a.
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Detection of PBP 2a. The strains were assayed for PBP 2a production by Western blotting. S. aureus membrane proteins were prepared from late-exponential-stage cultures. An overnight culture (100 µl each) was inoculated into 50 ml of fresh Trypticase soy broth and allowed to grow to an optical density at 578 nm of 1.0. The cells were harvested and washed with buffer (50 mM Tris, 150 mM NaCl, 5 mM MgCl2 [pH 7.5]) and then resuspended in the same buffer. Lysostaphin, DNase, and RNase were added to final concentrations of 100, 20, and 10 µg/ml, respectively; and then the mixture was incubated at 37°C for 30 min. The lysed cells were centrifuged at 4,400 x g for 10 min, and the supernatant was ultracentrifuged at 110,000 x g for 40 min. The resultant pellet was washed twice and resuspended in 50 mM phosphate buffer (pH 7.0). Membrane proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred as described previously (24). PBP 2a was detected with a mouse anti-PBP 2a monoclonal antibody (a gift of Denka Seiken Co., Ltd., Niigata, Japan) as the primary antibody (diluted 1:100,000) and alkaline phosphatase-conjugated anti-mouse immunoglobulin (Promega, Madison, Wis.). We detected bound antibodies by color development, as directed by the manufacturer.
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K at residue 237 within the nPBD, V
E at residue 470 near the SDN464 conserved penicillin-binding motif in the penicillin-binding domain (PBD), and S
N at residue 643 in the PBD near the carboxy terminus (Fig. 1).
Phenotypic expression of COL52 mecA on the plasmid in MRSAex or MSSA transformants.
Three plasmids, pYK20COLn(carrying wild-type mecA), pYK21COL52 (carrying COL52 mecA), and pAW8 (vector), were separately introduced into several MRSAex strains (i.e., methicillin-susceptible variants of methicillin-resistant strains from which SCCmec was excised) or MSSA strain RN4220. The selective pressure of beta-lactam antibiotics that might influence the phenotype was avoided by selecting for the plasmid, but not mecA, with tetracycline only. The effect of the host chromosome on the methicillin resistance phenotype was assessed by population analysis (Fig. 2). All MRSAex(pAW8) and RN4220(pAW8) transformants were susceptible to nafcillin at concentrations
0.8 µg/ml. COLn(pAW8) and COL52(pAW8) transformants showed homogeneous resistance, with the numbers of CFU of the former strain increasing up to a nafcillin concentration of 800 µg/ml and the numbers of CFU of the latter strain increasing up to a nafcillin concentration of >1,600 µg/ml. The BB270(pAW8) and N315(pAW8) transformants expressed class 3 heterogeneous resistance (i.e., 1 CFU in 102 to 104 with 100 µg of nafcillin per ml) and class 2 heterogeneous resistance (1 CFU in 105 to 106 with 100 µg of nafcillin per ml), respectively (22). The COL8a(pAW8) transformants were fully susceptible, consistent with the point mutation present in chromosomal mecA. When the MRSAex, COLnex, COL52ex, and BB270ex transformants were transformed with wild-type mecA on plasmid pYK20COLn, each expressed resistance in a pattern that was identical to that of each parent MRSA(pAW8) transformant. N315ex(pYK20COLn) transformants were slightly less heterogeneous than the parent, as evidenced by a shift to the right in the population analysis curve, probably due to the strong mecI repressor activity in N315(pAW8), which is absent from the unregulated mecA of pYK20COLn. COL8aex(pYK20COLn) transformants expressed heterogeneous resistance, indicating that, in addition to the point mutation within mecA, an additional mutation or mutations altering the normally homogeneous phenotype were also present in COL8a. Introduction of pYK21COL52 into the genetic backgrounds of strains COLnex, COL52ex, and BB270ex, all of which express a relatively high level of resistance when wild-type mecA is present, exhibited an even higher level of resistance, which was homogeneous, with virtually 100% of the CFU able to grow in the presence of nafcillin at a concentration of 100 µg/ml. The numbers of CFU increased in the presence of 1,600 µg of nafcillin per ml, the highest concentration tested. The strains with the RN4220, COL8aex, and N315ex backgrounds, which express heterogeneous resistance with wild-type mecA, retained their heterogeneous resistance patterns when they were transformed with pYK21COL52, although each had a resistant subpopulation that grew in the presence of up to 800 to 1,600 µg of nafcillin per ml.
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FIG. 2. Population analysis showing heterogeneous or homogeneous resistance phenotypes for five MRSA strains and one MSSA strain, RN4220, transformed with pYK20COLn (open triangles) expressing wild-type PBP 2a or with pYK21COL52 (open squares) expressing mutant PBP 2a. COLn and COL52 naturally express homogeneous methicillin resistance; BB270 and N315 express heterogeneous resistance; COL8a, a spontaneous mutant of COL that does not express PBP 2a, and RN4220 are methicillin susceptible. The phenotypes of the recipient parent and the mutant of the parent from which mecA was excised and that was transformed with plasmid vector pAW8 are indicated by solid and open circles, respectively. The y axis indicates the number of cells (in log10 CFU per milliliter) growing on nafcillin-containing agar; the concentration of nafcillin is shown on the x axis.
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transformants with a single mutation were unsuccessful for reasons that are unclear, limiting the experiments to examination of these four constructs. Each plasmid was introduced into strain COLnex or COL52ex, and the phenotype was assayed by population analysis with nafcillin (Fig. 3). COL52ex transformants (Fig. 3a) with either plasmid pYK26 or plasmid pYK28, each of which encoded two mutations, both of which were located in either the nPBD or the PBD of the molecule, respectively, showed a homogeneous pattern of resistance similar to that of strain COL52ex transformed with wild-type mecA on pYK20COLn. When pYK28, which encodes both mutations in the PBD, was introduced into COLnex, it had the same effect on the phenotype as wild-type mecA (Fig. 3b). The slightly different phenotypes of nafcillin resistance between the COLnex and COL52ex transformants can be attributed to the differences in the genetic backgrounds of the chromosomes between strains COLn and COL52 with pYK26, which encodes the two mutations in the nPBD, resulted in a fourfold increase in the nafcillin concentration in which the COLnex recipient could grow.
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FIG. 3. Population analysis of COL52 and COL52ex transformants (a) or COLn and COLnex transformants (b), as follows: parent recipient containing pAW8 (closed circles), recipient from which mecA was excised containing pYK20COLn (open squares), recipient from which mecA was excised containing pYK21COL52 (open circles), recipient from which mecA was excised containing pYK26 (multiplication signs), recipient from which mecA was excised containing pYK27 (open triangles), recipient from which mecA was excised containing pYK28 (open diamonds), and recipient from which mecA was excised containing pYK29 (plus signs).
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The amounts of PBP 2a detectable on immunoblots varied considerably among the transformants and bore no relationship to the resistance phenotype. COL52ex transformed with pYK20COLn, which encodes wild-type mecA, or pYK26, in which both mutations were located in the nPDB, produced amounts of PBP 2a that were similar to the amount produced by the COLn(pAW8) control strain (Fig. 4). Compared to COLn(pAW8), slightly less PBP 2a was detectable in both the COL52(pAW8) and the COL52ex(pYK21COL52) transformants. The amounts of PBP 2a in the COL52ex(pYK27), COL52ex(pYK28), and COL52ex(pYK29) transformants were significantly reduced relative to those in all other transformants.
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FIG. 4. Western blot analysis for expression of mecA in transformants with plasmid vector pAW8 or a plasmid encoding wild-type mecA (pYK20COLn) or mutant mecA (pYK21COL52, pYK26, pYK27, pYK28, pYK29).
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The contribution of background chromosomal mutations in COL (vis-à-vis those located within mecA) as a consequence of antibiotic passage to the overall level of resistance was minimal. Wild-type mecA in COLn, whether present as a single chromosomal copy or encoded on a low-copy-number plasmid vector, yielded identical population analysis curves with a steep falloff of growth over the narrow concentration range of 400 to 800 µg of nafcillin per ml. Wild-type mecA introduced into the COL52 mutant shifted the curve to twofold-higher concentrations. On the other hand, introduction of mutant mecA obtained from COL52 into either the COL or the COL52 background shifted the growth curve to 5- to 10-fold-higher concentrations in both. These data indicate that mutations in mecA, rather than chromosomal mutations at other loci, mediate the very high levels of resistance that were observed. This result is entirely consistent with PBP2a being the primary target determining susceptibility and resistance to beta-lactams in MRSA strains.
Mutations associated with this high level of resistance were investigated by constructing mecA genes in which mutations were present in either the PBD or the nPBD, or both. Unfortunately, the failure to construct mutants with single mutations limited the experiments to these constructs, but the results were informative. Although the PBD is directly involved in drug binding, surprisingly, the two mutations within it had virtually no effect on the resistance phenotype in either the COLn or COL52 background compared to that in wild-type PBP 2a background. The two mutations in the nPBD (one of which was located in the dispensable membrane anchor and which is unlikely to play much of a role in determining binding [16]) had no effect on the phenotype of the COL52 recipient compared to that of the strain with wild-type PBP 2a but resulted in a doubling of the nafcillin concentration in the presence of which COLn could grow. In the presence of three or four mutations within both the PBD and the nPBD, the very high levels of resistance that were observed with the COL52 mutant were reproduced. These results suggest that two amino acids substitutions, E
K237 and V
E470, in COL52 are principally important for the high level of resistance, as both of these substitutions were present in the transformants with pYK27 and pYK29, which expressed high-level resistance. When the mutations were not present together (as in pYK26 and pYK28), the transformants were less resistant. Interestingly, the nPBD contributed to the phenotype, although this region of the molecule is structurally distinct from that which is thought to physically interact with beta-lactams.
The reason for the differences in the amounts of immunoreactive PBP 2a for the various plasmid transformants is not clear. The amounts of membrane protein loaded for each preparation were similar. When we analyzed membrane proteins by Coomassie blue staining, the PBP 2a proteins of COLn, COL52ex(pYK20COLn), and COL52ex (pYK26) could be visualized; but those of the COL52, COL52ex(pYK27), COL52ex(pYK28), and COL52ex(pYK29) transformants couldnot (data not shown). Possible explanations for this are transcriptional or translational down-regulation, loss of protein from the membrane because of structural instability or turnover, or differences in immunoreactivity with the anti-PBP 2a monoclonal antibody. Differences in immunoreactivity seem unlikely, because similar results were obtained with polyclonal anti-PBP 2a antiserum (data not shown) (8) and the amount of PBP 2a detectable in the transformant with pYK29 was less than that detectable in the transformant with pYK21COL52, which differed only by a mutation in the transmembrane anchor region, which is not the epitope recognized by the monoclonal antibody. Unless there is some feedback loop involving the PBP 2a product, transcriptional down-regulation seems unlikely because the same promoter is present in all constructs. Translational and posttranslational events are possibilities. Interestingly, all four transformants with the least amount of detectable PBP 2a had one or two mutations in the PBD (in Fig. 4, compare pYK26 with mutations only in the nPBD to pYK21COL52, pY27, pYK28, and pYK29, all of which had mutations in the PBD), and these may contribute, for example, to instability of the molecule or increased protease susceptibility.
In summary, the results of the passage experiments described here indicate that multiple mutations both in mecA and at other chromosomal loci contribute to the emergence of very-high-level resistance to beta-lactam antibiotics in MRSA. This level of resistance is probably enough to confer cross-resistance even to beta-lactam antibiotics which bind to PBP 2a with a relatively high affinity, based on the increases in the MICs of penicillin and L-695,256 that were observed. The contribution of chromosomal loci appears to be relatively minor because very-high-level resistance was produced in strains with a variety of genetic backgrounds. Because the experimental approach did not use a serial analysis of stepwise mutants but used an after-the-fact reconstruction of a mutant with high-level resistance, the data cannot exclude the possibility that chromosomal loci do play roles at intermediate steps. The results are somewhat comforting in terms of the development of resistance, in that repeated serial passages were required to produce a highly resistant mutant and three to four PBP 2a mutations were needed to reproduce high-level resistance in transformants, suggesting that resistance is unlikely to emerge in a single step. On the other hand, these experiments in no way exclude the possibility of the emergence of a completely novel resistance mechanism (for example, the presence of a beta-lactamase capable of inactivating compounds stable in the presence of penicillinases) or the acquisition of a novel target able to circumvent beta-lactam inactivation, as was the case with the ancestral methicillin-resistant strain and its acquisition of mecA. Given the facility with which staphylococci have acquired resistance to any and every antibiotic in clinical use, the emergence of novel resistance mechanisms must always be a concern.
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