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Antimicrobial Agents and Chemotherapy, May 2004, p. 1640-1646, Vol. 48, No. 5
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.5.1640-1646.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Novel 4'-Substituted Stavudine Analog with Improved Anti-Human Immunodeficiency Virus Activity and Decreased Cytotoxicity
Ginger E. Dutschman,1 Susan P. Grill,1 Elizabeth A. Gullen,1 Kazuhiro Haraguchi,2 Shingo Takeda,2 Hiromichi Tanaka,2 Masanori Baba,3 and Yung-Chi Cheng1*
Department of Pharmacology, School of Medicine, Yale University, New Haven, Connecticut 06520,1
School of Pharmaceutical Sciences, Showa University, Tokyo 142-8555,2
Center for Chronic Viral Diseases, Division of Antiviral Chemotherapy, Faculty of Medicine, Kagoshima University, Kagoshima 890-8520, Japan3
Received 28 October 2003/
Returned for modification 18 December 2003/
Accepted 3 February 2004

ABSTRACT
The antiviral drug 2',3'-didehydro-3'-deoxythymidine (D4T; also
know as stavudine and Zerit), which is used against human immunodeficiency
virus (HIV), causes delayed toxicity (peripheral neuropathy)
in long-term use. After examining a series of 2',3'-didehydro-3'-deoxy-4'-substituted
thymidine (4'-substituted D4T) analogs, 4'-ethynyl D4T was found
to have a fivefold-better antiviral effect and to cause less
cellular and mitochondrial toxicity than D4T. The antiviral
activity of this compound can be reversed by dThd but not by
dCyd. The compound acted synergistically with ß-
L-2',3'-deoxy-3'-thiacytidine
(also known as lamivudine) and ß-
L-2',3'-dideoxy-2',3'-didehydro-5-fluorocytidine
(also known as elvucitabine) and additively with 2',3'-dideoxyinosine
(also known as didanosine and Videx) and 3'-azido-3'-deoxythymidine
(also known as Retovir and zidovudine) against HIV. 4'-Ethynyl
D4T is phosphorylated by purified human thymidine kinase 1 (TK-1)
from CEM cells with a faster relative
Vmax and a lower
Km value
than D4T. The efficiency of TK-1 in the phosphorylation of 4'-ethynyl
D4T is fourfold better than that of D4T. While D4T is broken
down by the catabolic enzyme thymidine phosphorylase, the level
of breakdown of 4'-ethynyl D4T was below detection. Since 4'-ethynyl
D4T has increased anti-HIV activity and decreased toxicity and
interacts favorably with other currently used anti-HIV drugs,
it should be considered for further development as an anti-HIV
drug.

INTRODUCTION
Human immunodeficiency virus (HIV [AIDS]) has become the leading
infectious cause of death worldwide, surpassing malaria and
tuberculosis. Data from the World Health Organization AIDS Epidemic
Update for December 2002 list 3.1 million deaths and 42 million
people currently living with AIDS. The need for new therapeutic
agents with better efficacy is evident. Dideoxynucleosides are
an important group of antiviral compounds (
18,
29,
30). A member
of this group, 3'-azido-3'-deoxythymidine (AZT; also known as
Retovir and zidovudine) was the first drug approved for the
treatment of HIV. Its dose-limiting adverse effect is myelosuppression
(
16,
39,
42), which may be worsened by the concurrent administration
of other drugs that cause bone marrow suppression or that are
hepatically metabolized. 2',3'-Didehydro-3'-deoxythymidine (D4T;
also known as stavudine and Zerit) was then approved because
of better bioavailability and lower acute toxicity levels (
1).
The use of D4T is limited by a long-term delayed toxicity, peripheral
sensory neuropathy (
5), which is related to mitochondrial damage
(
4,
6,
7,
15,
20,
25,
33,
36,
37). 2',3'-Dideoxyinosine (ddI;
also known as didanosine and Videx) and 2',3'-dideoxycytidine
(ddC; also known as zalcitabine) are dideoxynucleoside anti-HIV
compounds that also have peripheral neuropathy as their leading
adverse effect. In the search to find anti-HIV nucleoside analogs
that had less neuropathy, many classes of compounds were synthesized
and assessed for their antiviral activity and cytotoxicity (including
their impact on mitochondrial DNA [mtDNA]). Dideoxynucleosides
in the unnatural
L conformation represented by ß-
L-2',3'-dideoxy-3'-thiacytidine
(3TC; also known as lamivudine), its 5-fluoro analog (FTC; also
known as emtricitabine), and ß-
L-2',3'-dideoxy-2',3'-didehydro-5-fluorocytidine
(LFd4C; also known as elvucitabine) have been shown by Bridges
et al., Doong et al., Dutschman et al., and Lin et al. (
3,
13,
14,
26-
28) and others (
10,
11,
17,
41) to have good antiviral
activity and low mitochondrial toxicity levels. However, even
with compounds relatively nontoxic to mitochondria there is
a lack of a durable response. This condition can be caused by
either the rapid emergence of resistant virus or host changes
that cause differences in drug metabolism (
12,
22,
38).
One approach taken to combat this problem is that of developing compounds with less toxicity and a lack of cross-resistance to other antiviral drugs. When used in combinations, these compounds may decrease the dosage of existing drugs needed to achieve the same antiviral effect with less toxicity. Furthermore, these compounds can even delay the onset of resistance; such a delay might result from the decreased viral load during treatment. In the search for a new antiviral compounds, others have looked at 4'-substituted dThd analogs (32, 35), while we synthesized a series of 2',3'-didehydro-3'-deoxy-4'-substituted thymidine (4'-substituted D4T) analogs. Screening revealed the 4'-ethynyl D4T to be the most active compound among those tested (19). In the studies described within, we determined the structure activity relationship of this class of compounds and characterized 4'-ethynyl D4T in more detail with respect to its mode of action against HIV and its interaction with key cellular enzymes that mediate its activity.

MATERIALS AND METHODS
Chemicals.
The 4'-D4T analogs (Fig.
1) were synthesized in the laboratory
of Hiromichi Tanaka, School of Pharmaceutical Sciences, Showa
University, Tokyo, Japan. dThd, D4T, and 3'-azido-3'-deoxythymidine
(AZT) were purchased from Sigma-Aldrich Corp., St. Louis, Mo.
ddI was purchased from ICN Biochemicals Inc., Aurora, Ohio.
3TC was received from Triangle Pharmaceuticals, Durham, N.C.
LFd4C was received from Vion Inc., New Haven, Conn. All other
chemicals used were of reagent grade or higher.
Cell lines and virus.
Both the H9 cell line (used for toxicity studies and virus propagation)
and the MT-2 cell line (used for the antiviral activity studies)
were received from the AIDS Research and Reference Reagent Program
of the National Institutes of Health and were contributed by
Robert Gallo and Douglas Richman, respectively. The HIV-1 strain
IIIB was received from John Mellors.
Determination of antiviral activity.
Compounds were tested in MT-2 cells infected with HIV-1 strain IIIB essentially as described previously (34). Briefly, serial dilutions of drugs were placed in triplicate wells of a 96-well tissue culture plate and then MT-2 cells grown in RPMI 1640 medium supplemented with 10% dialyzed fetal bovine serum and 100 µg of kanamycin/ml were added at 104 cells/100 µl (± 0.1 multiplicity of infection) of HIV-1 IIIB. Five days later, MTT dye was added to the wells and the color of the tetrazolium dye (measured at 595 nm) was used to quantitate the cellular viability (23). Calculations of the percentage of protection and isobologram combination studies have been described previously (14). Briefly, using the same antiviral assay method the 50% effective concentrations (EC50) of compounds alone and in combination with a second compound were plotted using Cartesian coordinates. This graphic display of drug effect is configured in the form of an isobologram. If the paired points fall on the line connecting the axial points the compounds are additive, but if the point is shifted to the left the combination is considered to be synergistic (2, 9, 21, 40).
Cellular toxicity of nucleoside analogs.
These dThd analogs have been evaluated in several cell lines (H9, CEM, MT-2, and HepG2). The basic procedures are similar. The cells are seeded a low concentration, and then serial dilutions of test compound are added. The CEM, MT-2, and H9 cell lines we used are grown in RPMI 1640 supplemented with 10% dialyzed fetal bovine serum and 10 µg of kanamycin/ml. After 48 to 96 h of incubation at 37°C in a 5% CO2 humidified incubator, the assay is ended. The drug-treated samples are compared to the untreated controls. This is accomplished with suspension cell lines by counting cell numbers with a hemocytometer or by using a Coulter counter. The HepG2 cells (representing a human hepatoma cell line) were grown in Dulbecco's modified Eagle's medium supplemented with 10% dialyzed fetal bovine serum and 10 µg of kanamycin/ml. The effect on HepG2 (a monolayer cell line) was quantified by staining with 1.0% methylene blue dye dissolved in 50% ethanol after the growth medium was decanted. The cell layer was then solubilized in a 5% sarkosyl solution and the resulting color was measured at 595 nm on a model Vmax plate-reading spectrophotometer (Molecular Devices, Menlo Park, Calif.). The color of the untreated controls was compared to that of the drug-treated samples.
mtDNA.
The effect of nucleoside analogs on mtDNA content was assessed as described previously (3). Briefly, CEM cells maintained in RPMI 1640 supplemented with 10% dialyzed fetal bovine serum were plated at 2 x 105/ml into a 24-well tissue culture plate. Cells (treated with drugs used at various concentrations either as single agents or in combination) were grown for 4 days. Cells were then harvested and treated with proteinase K and DNase-free RNase. Extracts were applied to nylon membranes and hybridized with an mtDNA probe. After the membrane was stripped, the load was normalized by rehybridizing the membrane with an Alu probe. Blots were quantitated with a Molecular Dynamics personal densitometer synergy index (SI) and ImageQuant analysis software.
Monophosphorylation of analogs by TK.
All the analogs were tested for their ability to be phosphorylated by thymidine kinase 1 (TK-1) from CEM cells. This enzyme was purified by an affinity column technique developed in this laboratory (8). Thymidine analogs (250 µM) were incubated in a mixture that contained 150 mM Tris HCl (pH 7.5), 2.4 mM ATP, 2.4 mM MgCl2, 0.6 mg of creatine phosphate, 5.8 U of creatine phosphokinase, 0.19 mg of albumin, and 0.07 U of TK-1 in a total volume of 200 µl. At the end of the incubation time the reaction was stopped by the addition of 3 parts of cold high-pressure liquid chromatography (HPLC) grade methanol. After being incubated on ice for at least 10 min, the methanol-insoluble material was precipitated by centrifugation and the methanol-soluble supernatants were placed into clean microcentrifuge tubes. These samples were brought to dryness in a Speedvac centrifuge. The samples were dissolved in water and separated on a Shimatzu HPLC model SCL 10Avp apparatus using a gradient of water to 300 mM potassium phosphate and a Whatman 10/25 particle SAX column. Km and relative Vmax studies were done in a similar fashion, using the same mixture and different amounts of substrate and enzyme.
Acid stability studies.
Nucleoside samples were mixed with 1 N HCl and incubated at 37°C for 2.5 h. The samples were then examined by HPLC using a Beckman ODS column employing a gradient of water to 80% methanol.
TP assays.
Nucleoside analogs (100 µM) were incubated in 75 mM potassium phosphate buffer (pH 7.3) at 37°C through the use of a partially purified preparation of human liver extract (31) as a source of the thymidine phosphorylase (TP). After incubation, the reaction was stopped by the addition of trichloroacetic acid to a final concentration of 15%. The samples were then incubated on ice. After the acid-insoluble components were removed by centrifugation, the supernatant was neutralized by two extractions with one-half volume of trioctylamine-freon (45:55). The aqueous supernatants were examined by HPLC using the Beckman ODS column method as described in the previous paragraph.
TK assays.
The TK assays were performed as described previously (24). Briefly, the assay used [14C]dThd (100 µM, 6.7 mCi/mmol) in a mixture that contained 2.4 mM ATP-Mg, 156 mM Tris-HCl (pH 7.5), 0.23 mg of creatine phosphate, 7 µg of creatine phosphokinase, 67 µg of bovine serum albumin, and 1.9 mM dithiothreitol in a 75-µl volume. The reaction mixtures were incubated for various amounts of time and were then terminated by spotting 50-µl aliquots onto DE-81 anion exchange disks (Whatman Inc., Clifton, N.J.) that were immersed immediately in 95% ethanol. After two additional washes in ethanol, the disks were dried and placed in scintillation vials that contained 5 ml of SafeScint scintillation cocktail (American Bioanalytical, Natick, Mass.). The amount of radioactivity (which represents the amount of dTMP formed) was quantitated in an LS5000TD scintillation counter (Beckman Instruments Inc., Palo Alto, Calif.).

RESULTS
Antiviral effect of 4'-substituted D4T analogs.
Experiments were performed in the MT-2/IIIB anti-HIV-1 system
by adding compounds with a substitution of a methyl, vinyl,
ethynyl, methylethynyl, chloroethynyl, allyl, or cyano group
at the 4' position of D4T (Fig.
1). The results indicated that
the 4'-ethynyl analog was more effective against HIV and less
toxic than the parental compound D4T. Whereas 4'-cyano D4T and
4'-methylethynyl D4T were less active than D4T against HIV (Fig.
2), the 4'-methyl-, 4'-vinyl-, 4'-chloroethynyl-, and 4'-allyl-substituted
D4T analogs did not achieve an EC
50 at a concentration of 100
µM. A summary of the EC
50 against HIV of these compounds
together with D4T is shown in Table
1.
To determine whether 4'-ethynyl D4T acts as a dThd analog against
HIV, the effect of the addition of dThd or dCyd on the antiviral
activity of 4'-ethynyl D4T was examined. To prevent the possibility
of deamination of dCyd to dUrd in cells, a cytidine deaminase
inhibitor, tetrahydro uridine, was also added (at a nontoxic
level). It was observed that dThd decreased the antiviral effect
of 4'-ethynyl D4T in a concentration-dependent manner. However,
dCyd had no significant effect on the activity of 4'-ethynyl
D4T against HIV (Fig.
3).
To assess the interaction of 4'-ethynyl D4T with other antiviral
nucleoside analogs, the antiviral isobolograms of 4'-ethynyl
D4T in combination with 3TC, LFd4C, ddI, and AZT were generated.
4'-Ethynyl D4T was shown to have synergistic interactions with
3TC and LFd4C against HIV (Fig.
4), and the SI was determined
by measuring the relative distance from the line indicating
an additive drug effect. However, the antiviral effect of 4'-ethynyl
D4T in combination with ddI and AZT was only additive (data
not shown).
Cellular toxicity.
The effect of the 4'-substituted D4T analogs on cell growth
and mtDNA content was determined with CEM cells (Table
2). None
of those analogs (with the exception of 4'-chloroethynyl D4T)
could retard 4-day cell growth with a 50% infective dose (ID
50)
of less than 100 µM. Results of 72-h toxicity studies
of HepG2 cells also showed that the ID
50 values for D4T, 4'-vinyl
D4T, and 4'-ethynyl D4T were more than 100 µM. 4'-Ethynyl
D4T decreased intracellular mtDNA with an ID
50 of 100 µM,
which is a concentration 10 times higher than that required
with D4T. In view of the synergistic interaction of 4'-ethynyl
D4T with 3TC and LFd4C against HIV, the effect of the interaction
of those compounds on cell growth was also assessed. With H9
cells observed during a 48-h assay, no significant increase
in toxic interactions was seen (Table
3).
View this table:
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TABLE 3. Toxicity in H-9 cells of 4'-ethynyl D4T alone and in combination with other anti-HIV compounds as percentages of the results obtained with untreated controlsa
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Interaction of 4'-substituted D4T analogs with TK-1.
The potential of these compounds to be phosphorylated by purified
human TK-1 was assessed (Table
4). AZT was converted to the
monophosphate form half as fast as dThd, while the rates for
4'-methyl D4T and 4'-vinyl D4T were similar to the rate for
D4T (approximately 2% of the rate seen with dThd). The conversion
rate of 4'-ethynyl D4T was superior to that of D4T (with a confidence
level of 0.06). There was no significant difference in the phosphorylation
rates of 4'-ethynyl D4T and 4'-chloroethynyl D4T (with a confidence
level of 0.91 [two-tailed test]). The
Km of 4'-ethynyl D4T was
assessed to be 52 µM, which is lower than the 133 µM
assessed for D4T but higher than the
Km seen with dThd. To be
sure that none of these dThd analogs act as a potent inhibitor
of TK-1 (even if they are not substrates), dThd, AZT, D4T, and
the 4'-substituted analogs of D4T were added to a TK assay at
a concentration 10-fold higher than that of the [
14C]dThd and
then the amount of conversion to [
14C]dTMP was compared to the
results seen with reaction mixtures with no additions (Table
5). Compounds (such as AZT) that are phosphorylated well by
TK-1 can affect the amount of phosphorylated dThd. The addition
(even in a 10-fold excess) of D4T or its analogs that are poorly
phosphorylated has less effect than that of AZT on [
14C]dThd
phosphorylation by TK-1.
Interaction with TP and acid stability of 4'-ethynyl D4T.
A partially purified preparation of TP from human liver was
utilized for these studies. dThd broke down very quickly, while
D4T broke down at least 10 times more slowly. The breakdown
of 4'-ethynyl D4T was below the detection level during the whole
incubation period studied (Fig.
5). The stability of D4T and
4'-ethynyl D4T at pH 1 and 37°C was examined for 2.5 h.
No breakdown of either compound was detected.

DISCUSSION
D4T is an effective anti-HIV
D-dideoxy-thymidine analog. Its
limiting clinical toxicity in long-term treatment is peripheral
neuropathy, which is associated with its action of decreasing
the mtDNA content of peripheral neurons (
5,
6,
36,
37). The
biochemical determinants of the action of D4T are different
from those of 3TC, ddI, or ddC. An analog of D4T which has more
potent anti-HIV activity and less impact on nuclear or mtDNA
synthesis could have a better therapeutic effect than D4T and
could substitute for D4T in anti-HIV combination therapy. Thus,
the synthesis of D4T analogs with better pharmacological properties
is a direction which has been taken in anti-HIV drug discovery.
Among all the 4'-substituted D4T analogs synthesized by us and
others, 4'-ethynyl D4T is the compound most active against HIV
in culture. Maag et al. described a 4'-azido D4T that was inactive
against HIV at nontoxic levels (
32), and O-Yang et al. described
three 4'-substituted D4T analogs that were nontoxic and had
no anti-HIV activity (
35).
D4T is catabolized (rather quickly) into beta-aminoisobutyric acid and thymine by the hepatocytes of the liver (J. P. Sommadossi, Z. Zhou, M. J. Hitchcock, H. M. McClure, M. el Kouni, and E. Cretton, abstract from the Proceedings of the Annual Meeting of the American Association for Cancer Research, Cancer Res. 33:A3253, 1992). The enzyme responsible for this breakdown is TP, which in the presence of phosphate breaks dThd into thymine and 2-deoxy-D-ribose-1-phosphate. By the incubation of 4'-ethynyl D4T and D4T with a partially purified preparation of human liver TP, it was shown that 4'-ethynyl D4T was much more resistant to TP than D4T. This indicates that 4'-ethynyl has an additional advantage over D4T from a pharmacokinetic point of view. Furthermore, 4'-ethynyl D4T is also as stable as D4T in an acidic condition that mimics the stomach (data not shown). This suggests that 4'-ethynyl D4T (like D4T) could be an orally active agent. Detailed pharmacokinetic studies will be performed in the future. Since 4'-ethynyl D4T is more potent than D4T, it is conceivable that 4'-ethynyl D4T could present fewer viral drug resistance issues. When 4'-ethynyl D4T is employed at the same dosage as D4T for the patient, the viral load is much less, thereby decreasing the probable occurrence of resistant strains. It may also be possible to give 4'-ethynyl D4T at higher dosage than D4T, since 4'-ethynyl D4T is less inhibitory to cell growth and causes less of a decrease in the levels of mtDNA than D4T. However, the determination of the amount of 4'-ethynyl D4T that can be safely used will require further investigation.
Monotherapy allows the development of resistant strains of virus to occur more readily than combination therapy. It is therefore necessary for an antiviral compound to work in conjunction with other approved antiviral drugs which have different biochemical determinants of drug resistance. If the compounds are synergistic (or at least additive) with respect to their antiviral activity, but not with respect to their cytotoxic effect on the host cells, improved therapy can be achieved. Indeed, combination therapy for HIV has made tremendous progress in the management of AIDS and D4T is often used as one of the drugs in combination protocols. To assess the potential use of 4'-ethynyl D4T in combination therapy, we examined the interaction of this compound with four antiviral nucleoside analogs. 4'-Ethynyl D4T is synergistic with 3TC and LFd4C (Fig. 3) and additive with AZT and ddI (data not shown) with respect to anti-HIV activity but not with respect to cytotoxicity (Table 3). This suggests that 4'-ethynyl D4T could be a useful compound for combination therapy and could be useful against viruses resistant to currently used nucleosides by increasing the effectiveness of those nucleosides through a synergistic response. The activity of 4'-ethynyl D4T against viruses resistant to other nucleoside analogs is currently being investigated.
The underlying mechanism that makes 4'-ethynyl D4T more active against HIV than the other 4'-substituted D4T analogs studied is not clear. Deoxynucleoside analogs typically are converted into 5'-triphosphate metabolites that are substrates for viral DNA polymerases. Triphosphate metabolites of known anti-HIV dideoxynucleosides interact preferentially with viral reverse transcriptase and act as chain terminators when they are incorporated into a DNA strand. The formation of the monophosphate metabolite is the first step in the process of the formation of a triphosphate metabolite. The 4'-substituted D4T compounds are (like D4T) dThd analogs, so we used purified TK-1 to test whether it could phosphorylate these analogs to their respective monophosphate forms. The results showed that 4'-ethynyl D4T was phosphorylated twice as fast as D4T (although at a much slower rate than that seen with dThd or AZT). It is interesting that the 4'-methyl D4T and 4'-vinyl D4T analogs were phosphorylated at the same rate as D4T, but neither had significant anti-HIV activity. Thus, it can be concluded that the lack of activity against HIV of some of these 4'-substituted D4T analogs is not due to their inability to be phosphorylated by TK-1. The phosphorylation of 4'-ethynyl D4T by TK-1 is an essential step but is not sufficient to generate antiviral activity. Since its antiviral effect could be neutralized by dThd but not by dCyd, 4'-ethynyl D4T (like D4T) acts as a dThd analog; however, the antiviral mechanism of action of 4'-ethynyl D4T could still be quite different from that of D4T. Our unpublished results indicate that D4T could be more efficiently phosphorylated (using a CEM cellular extract supplemented with partially purified TK-1 and recombinant human dTMP kinase) to the triphosphate metabolite than 4'-ethynyl D4T. This raises the issue of whether the 4'-ethynyl D4TMP is the active metabolite instead of 4'-ethynyl D4TTP and requires further investigation.
In conclusion, 4'-ethynyl D4T is more potent against HIV and less toxic than D4T in cell culture. It could also have pharmacokinetic advantages over D4T, since it is not a substrate of TP. The potential of 4'-ethynyl D4T as a new anti-HIV drug is suggested by these studies and warrants further investigation.

ACKNOWLEDGMENTS
This work was supported by Public Heath Service grant AI-38204
from the National Institutes of Health to Y.-C.C. It was also
supported in part by grants from Japan Health Sciences Foundation
(SA14718 to M.B.), Japan Society for the Promotion of Science
(KAKENHI 15590100 to K.H. and 15590020 to H.T.), and the Research
Foundation for Pharmaceutical Sciences (to K.H.). Y.-C. C. is
a Fellow of the National Foundation for Cancer Research.

FOOTNOTES
* Corresponding author. Mailing address: Department of Pharmacology, School of Medicine, Yale University, 333 Cedar St., New Haven, CT 06520. Phone: (203) 785-7118. Fax: (203) 785-7129. E-mail:
YCCheng{at}Yale.edu.


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Antimicrobial Agents and Chemotherapy, May 2004, p. 1640-1646, Vol. 48, No. 5
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.5.1640-1646.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
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