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Antimicrobial Agents and Chemotherapy, June 2004, p. 2043-2048, Vol. 48, No. 6
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.6.2043-2048.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Biochemical Characterization of the Naturally Occurring Oxacillinase OXA-50 of Pseudomonas aeruginosa
Delphine Girlich, Thierry Naas, and Patrice Nordmann*
Service de Bactériologie-Virologie, Université Paris XI, Hôpital de Bicêtre, Assistance Publique/Hôpitaux de Paris, Faculté de Médecine Paris-Sud, 94275 Le Kremlin-Bicêtre, France
Received 1 August 2003/
Returned for modification 9 November 2003/
Accepted 12 February 2004

ABSTRACT
The
blaOXA-50 gene (formerly known as the PA5514 gene) is an
oxacillinase gene identified in silico in the genome of
Pseudomonas aeruginosa PAO1. By using a mutant strain of
P. aeruginosa PAO1
that had an inactivated
blaAmpC cephalosporinase gene, the
blaOXA-50 gene was shown to be expressed constitutively in
P. aeruginosa.
This ß-lactamase gene was cloned onto a multicopy
plasmid and expressed in
P. aeruginosa and
Escherichia coli.
It conferred decreased susceptibility to ampicillin and ticarcillin
and, interestingly, to moxalactam and meropenem in
P. aeruginosa but not in
E. coli. Overexpression and purification enabled
us to determine the molecular mass (25 kDa), the pI value (8.6),
and the hydrolysis spectrum of the OXA-50 ß-lactamase.
It is a narrow-spectrum oxacillinase that uncommonly hydrolyzes
imipenem, although at a low level. Very similar oxacillinase
genes were identified in all
P. aeruginosa isolates from various
geographical origins tested. The weak variability of the nucleotide
sequence of this gene (0 to 2%) corresponded to that found for
the naturally occurring
blaAmpC cephalosporinase gene of
P. aeruginosa. The study indicated that
P. aeruginosa harbors two
naturally encoded ß-lactamase genes, one of which
encodes an inducible cephalosporinase and the other of which
encodes a constitutively expressed oxacillinase.

INTRODUCTION
Pseudomonas aeruginosa is an opportunistic pathogen that mainly
causes severe pneumonia in immunocompromised hosts and may colonize
the lungs of patients with cystic fibrosis (
31). A mutant strain
of
P. aeruginosa PAO1 that had an inactivated cephalosporinase
gene was constructed in a previous study (
20). The resulting
ß-lactam resistance profile was oversusceptibility
to all ß-lactam antibiotics, demonstrating the main
role of cephalosporinase in naturally occurring resistance in
that species. However, in silico analysis of the
P. aeruginosa PAO1 genome (
32) identified a putative ß-lactamase
gene, named PA5514, whose sequence was consistent with those
of several oxacillinase genes. Thus, the purpose of the present
work was to clone and overexpress the gene, characterize its
biochemical properties, and analyze its diversity among
P. aeruginosa isolates.

MATERIALS AND METHODS
Bacterial strains and plasmids.
P. aeruginosa PAO1 was used as the template (
32) for PCR amplification
and cloning experiments (
29).
P. aeruginosa KG2505 (
20), an
AmpC-deficient PAO1 mutant (
ampC::

Sm
mexA::
res
Sm), was used
as the host in the cloning experiments with the multicopy shuttle
vector pBBR1MCS.3 (
13). A series of clinical
P. aeruginosa isolates
was analyzed, i.e.,
P. aeruginosa COL-1 (
23) and
P. aeruginosa ED-1 (
24), which were obtained from the Hospital Bicêtre,
Paris, France;
P. aeruginosa GW-1 (
26), which was from South
Africa;
P. aeruginosa Ka.209 (
27), which was from Spain;
P. aeruginosa strain 1, which was from Thailand (
8); and
P. aeruginosa IND, which was from India (this study).
Escherichia coli reference
strains DH10B and BL21(DE3), as well as the TOPO plasmid (Invitrogen,
Life Technologies, Cergy-Pontoise, France), were used for the
cloning experiments; and pET9a (Stratagene, Amsterdam, The Netherlands)
was used as an expression vector.
Susceptibility testing.
The antimicrobial agents and their sources have been referenced elsewhere (22). Antibiotic-containing disks were used to detect antibiotic susceptibility with Mueller-Hinton agar plates and by a disk diffusion assay (Sanofi Diagnostics Pasteur, Marnes-la-Coquette, France). The results were interpreted according to the guidelines of the French Society for Microbiology (http://www.sfm.asso.fr/nouv/general.php?pa=2). The MICs of selected ß-lactams were determined by an agar dilution technique, as described elsewhere (22). MIC results were interpreted according to the guidelines of the National Committee for Clinical Laboratory Standards (18).
PCR amplification and cloning experiments.
Whole-cell DNAs of P. aeruginosa PAO1 and clinical isolates were extracted as described previously (22, 29) and were used as templates for PCR amplification. PCR products of 869 bp, including the complete sequence of the blaOXA-50 gene (previously named PA5514), were generated with primers S (5'-AATCCGGCGCTCATCCATC-3') and AS (5'-GGTCGGCGACTGAGGCGG-3'), the sequences of which are located at each end of the blaOXA-50 gene of the P. aeruginosa PAO1 genome (32). The diversity of the oxacillinase genes in P. aeruginosa was studied by sequencing the PCR products obtained with whole-cell DNA of unrelated P. aeruginosa strains, as described previously (8).
The PCR amplicon of the entire blaOXA-50 gene of P. aeruginosa PAO1 was then cloned into the pPCRBluntII-TOPO plasmid, as recommended by the manufacturer (Invitrogen, Life Technologies), and expressed in E. coli DH10B. The cloned insert was then removed by restriction with SpeI and XbaI (Amersham Pharmacia Biotech, Orsay, France) and subcloned into the SpeI- and XbaI-digested shuttle vector pBBR1MCS.3 (13), which replicates in P. aeruginosa and E. coli. The recombinant plasmid, named pBB-1, was introduced into P. aeruginosa strains PAO1 and KG2505, as described previously (13).
The following primers were used to clone the blaOXA-50 gene into the expression vector pET9a: primer O50-ATG, which contained the initiation codon of the blaOXA-50 gene; ATG, along with an NdeI restriction site, which is underlined (5'-AAAAACATATGCGCCCTCTCCTCTTCAGT-3'); and primer O50-TGA, which contained the termination codon of the blaOXA-50 gene, TGA, along with a BamHI restriction site, which is underlined (5'-AAAAGGATCCATCAGGGCAGTATCCCGAGAGC-3'). Whole-cell DNA of P. aeruginosa PAO1 was used as the template. After PCR amplification, a 788-bp NdeI-BamHI-restricted fragment was ligated into the NdeI-BamHI-restricted pET9a expression vector and electroporated into E. coli BL21(DE3). E. coli BL21(DE3) containing recombinant plasmid pET-1 was selected on kanamycin-containing agar plates (30 µg/ml).
DNA sequencing and protein analysis.
Both strands of the PCR products corresponding to the blaOXA-50 genes of unrelated P. aeruginosa isolates and all the insert region of the recombinant plasmids were sequenced with an automated sequencer (ABI 3100; Applied Biosystems, Les Ulis, France). The nucleotide and protein sequences were analyzed with software available over the Internet at the National Center for Biotechnology Information website (http://www.ncbi.nlm.nih.gov).
IEF analysis.
ß-Lactamases were submitted to isoelectric focusing (IEF), as described previously (22), with culture extracts of strains P. aeruginosa PAO1, P. aeruginosa KG2505, and E. coli BL21(DE3) with and without recombinant plasmids (i.e., pBB-1 for the P. aeruginosa strains or pET-1 for the E. coli strain) and with the purified ß-lactamase OXA-50.
ß-Lactamase purification, relative molecular mass determination, and N-terminal sequencing.
Induction of an exponentially growing culture of E. coli BL21(DE3)(pET-1) with 0.4 mM isopropyl ß-D-thiogalactopyranoside (IPTG) was performed at 37°C for 5 h in Trypticase soy (TS) broth. Four liters of this culture was pelleted and resuspended in 30 ml of 20 mM Tris H2SO4 buffer (pH 9.0). The protein extracts obtained were purified as described previously (24). Briefly, the extracts were subjected to several purification steps, including ion-exchange chromatography on a Q-Sepharose column equilibrated with a 20 mM Tris-H2SO4 buffer (pH 9.0), followed by chromatography on an S-Sepharose column equilibrated with 25 mM malonate buffer (pH 5.6). Elution of the ß-lactamase was performed with a linear K2SO4 gradient (0 to 500 mM). Peaks of ß-lactamase activities were dialyzed overnight against 50 mM phosphate buffer (pH 7.0). The protein content was measured by the Bio-Rad DC protein assay, and the specific activities of the crude extract and the purified ß-lactamase from E. coli BL21(DE3)(pET-1) were compared. The protein purification rate and the relative molecular mass of OXA-50 ß-lactamase were estimated by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) analysis (22). The proteins were then transferred onto a polyvinylidene difluoride (PVDF) membrane (Problott; Applied Biosystems) by passive absorption, as described by Messer et al. (16), with some modifications. After the destaining step, the bands of interest were excised and dried in a Speed-Vac dryer for 30 min, and then the gel pieces were reswollen in 136 µl, which corresponded to the initial volume of the excised band (2% SDS in 0.2 M Tris-HCl [pH 8.5]), for 60 min. After the gel pieces were swollen, a fivefold volume of high-pressure liquid chromatography-grade water was added, and then a piece of prewetted (methanol) PVDF membrane (4 by 4 mm; Problott; Applied Biosystems) was added to the solution. The protein was transferred to the membrane by gentle shaking for 2 days at room temperature (23°C). Subsequently, the membrane was washed five times with 1 ml of 10% methanol with vortexing. N-terminal Edman sequencing was performed on an Applied Biosystems Procise 494HT sequencer with the reagents and by the methods recommended by the manufacturer.
Kinetic studies.
Purified ß-lactamase was used for kinetic measurements at 30°C in 100 mM Tris-H2SO4-300 mM K2SO4 (pH 7.0) (21, 24). The kcat and Km values were determined by analyzing ß-lactam hydrolysis under initial-rate conditions with a UV spectrophotometer, as described previously (24). The 50% inhibitory concentrations (IC50s) of clavulanic acid, tazobactam, sulbactam, and NaCl were determined (24). Various concentrations of these inhibitors were preincubated with purified enzyme for 3 min at 30°C to determine the concentrations that decreased the rate of hydrolysis of 100 µmol of nitrocefin by 50%. The effect of carbon dioxide on the modulation of the enzymatic properties of OXA-50 was investigated by adding NaHCO3 to the reaction buffer at a final concentration of 10 mM. Specific activities and kcat and Km values were determined for most substrates in the presence and in the absence of bicarbonate (9, 15, 21). The specific activities of the protein extracts and purified ß-lactamase from culture of E. coli BL21(DE3)(pET-1) were determined with 100 µM nitrocefin as the substrate. One unit of activity was defined as the amount of enzyme that hydrolyzes 1 µmol of nitrocefin per min (24). The inducibility of the ß-lactamase content from the P. aeruginosa KG2505 culture was tested in TS broth at 37°C by the induction protocol described previously (19) with cefoxitin and imipenem as ß-lactam inducers at various concentrations (0.1, 0.5, and 1 µg/ml).
Nucleotide sequence accession numbers.
The nucleotide sequences of the OXA-50 variants reported in this paper have been submitted to the EMBL/GenBank nucleotide sequence database and assigned accession numbers AY306130 to AY306135.

RESULTS AND DISCUSSION
Antibiotic susceptibility and ß-lactamase activity.
P. aeruginosa KG2505 (
ampC::

Sm
mexA::
res
Sm [
20]), an AmpC-deficient
derivative of wild-type strain
P. aeruginosa PAO1, was hypersusceptible
to all ß-lactams compared to the susceptibilities
of any of the wild-type
P. aeruginosa strains (Table
1), underlining
an important role of the cephalosporinase in the natural resistance
of
P. aeruginosa to ß-lactams. The multicopy plasmid
pBB-1, which contains the
blaOXA-50 gene from
P. aeruginosa PAO1, provided a slight additional level of resistance to amoxicillin,
ticarcillin, and, interestingly, meropenem in
P. aeruginosa KG2505. Specific ß-lactamase activities of 0.2 and
20 mU/mg of protein were determined for
P. aeruginosa KG2505
and
P. aeruginosa KG2505(pBB-1), respectively, with 100 µM
nitrocefin as the substrate. This result suggests that the
blaOXA-50 gene is expressed in
P. aeruginosa KG2505 and that it induces
only minor phenotypic changes when expressed from a multicopy
plasmid in
P. aeruginosa KG2505. The introduction of plasmid
pBB-1 into parental strain
P. aeruginosa PAO1, which had wild-type
levels of AmpC and MexA-OprM expression, provided additional
ß-lactam resistance, i.e., resistance to moxalactam
and meropenem (Table
1).
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TABLE 1. MICs of ß-lactams for P. aeruginosa PAO1 and its isogenic mutant, P. aeruginosa KG2505 (AmpC, MexA, OmpF), with and without recombinant plasmid pBB-1
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Plasmid pBB-1 was electroporated into
E. coli DH10B. Antibiotic
susceptibility testing revealed that
E. coli DH10B(pBB-1) was
susceptible to all the ß-lactams tested, even though
ß-lactamase production could be demonstrated by nitrocefin
hydrolysis (data not shown). The
blaOXA-50 gene of
P. aeruginosa PAO1 was subsequently cloned into expression vector pET9a and
expressed in
E. coli BL21(DE3). Similarly to
E. coli DH10B (pBB-1),
E. coli BL21(DE3)(pET-1) was fully susceptible to all the ß-lactams
tested whether the bacterium was grown in the presence or in
the absence of IPTG (data not shown). Culture extracts of
E. coli BL21(DE3)(pET-1) contained strong ß-lactamase
activity, as assessed by nitrocefin hydrolysis activity (see
Table
4).
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TABLE 4. Purification steps of ß-lactamase OXA-50 produced by E. coli BL21(DE3) harboring recombinant plasmid pET-1
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IEF analysis of
P. aeruginosa strain KG2505 culture extracts
revealed a single ß-lactamase band with a pI value
of 8.6 focusing at the same pI value as the chromosomally encoded
cephalosporinase of parental strain
P. aeruginosa PAO1 (data
not shown). The identical pI values of the cephalosporinase
and oxacillinase of
P. aeruginosa might explain why this oxacillinase
was unidentified for decades. IEF of IPTG-induced culture extracts
of
E. coli BL21(DE3) harboring recombinant plasmid pET-1 had
ß-lactamase activity with a pI value of 8.6, which
corresponds to that of the cloned oxacillinase OXA-50; the chromosome-encoded
cephalosporinase AmpC from
E. coli had a pI value of 9.2.
Induction studies with cefoxitin or imipenem as the ß-lactam inducers at various concentrations failed to demonstrate any induction of ß-lactamase expression in P. aeruginosa KG2505 (data not shown).
Detailed structural analysis of the blaOXA-50 gene and its surrounding DNA sequences.
The G+C content of the blaOXA-50 gene open reading frame was 65%, which lies within the expected range of the G+C contents of P. aeruginosa genes, suggesting that the blaOXA-50 gene is naturally occurring in that species. The deduced amino acid sequence of the ß-lactamase OXA-50 contained a motif found in serine ß-lactamases (11), with a serine-threonine-tyrosine-lysine (S-T-Y-K) motif replacing the most commonly found serine-threonine-phenylalanine-lysine (S-T-F-K) motif at positions 70 to 73 (class D ß-lactamase [DBL] numbering) (4) (Fig. 1). The five structural elements characteristic of class D ß-lactamases were found: S-X-V at DBL positions 119 to 120, W-X-X-X-X-L-X-I-X at DBL positions 164 to 172, Q-X-X-X-L at DBL positions 176 to 190, K-T-G at DBL positions 216 to 219, and Y-G-N at DBL positions 144 to 146 (4). The amino acid sequence of OXA-50 was compared with those of known oxacillinases (Fig. 1; Table 2). A K-T-G motif (DBL positions 216 to 219) was found in OXA-50, as in the carbapenem-hydrolyzing ß-lactamases OXA-23 and OXA-27, whereas it was replaced by a K-S-G motif in the second group of carbapenem-hydrolyzing oxacillinases, made up of OXA-24, OXA-25, OXA-26, and OXA-40. The fifth structural element of oxacillinases, Y-G-N, was not replaced by an F-G-N motif in OXA-50, as in the most of the carbapenem-hydrolyzing oxacillinases (10). As illustrated in Fig. 1, the oxacillinase genes exhibit many different structural features, and little is known about the relevance of these differences for explaining the variabilities of the hydrolysis spectra (7). Indeed, OXA-50 is the only oxacillinase containing an S-T-Y-K motif that replaces the classical S-T-F-K motif of oxacillinases. Further investigations may demonstrate whether this structural feature plays a role in the biochemistry of OXA-50. OXA-50 was weakly related to other oxacillinases; the highest identity was with the carbapenem-hydrolyzing ß-lactamases OXA-23 (44%) (6) and OXA-27 (43%) (1) from Acinetobacter baumannii, OXA-SHE (41%) from Shewanella algae, and ß-lactamase all2480 (40%) (12) from a Nostoc cyanobacterial sp. A phylogenetic tree constructed with the known oxacillinases and based on amino acid sequence identity (2) showed that OXA-50 (formerly PA5514) could not be included in any of the five defined groups (30). However, OXA-50 might share a common ancestor with the group of enzymes that includes OXA-10 and OXA-5, referred to as "group I" by Sanschagrin et al. (30).
The nucleotide sequences of the flanking regions of the
blaOXA-50 gene did not show any inverted or repeated sequences indicating
the presence of a transposable element. In addition, the
blaOXA-50 gene was not inserted into a classical integron, as indicated
by the absence of 59-base elements linked to the ß-lactamase
gene. No open reading frame that shared significant sequence
identity with known ß-lactamase regulator genes was
found immediately upstream of the
blaOXA-50 gene.
A blaOXA-50-like gene was identified in all the P. aeruginosa isolates tested (Table 3). Comparison of the nucleotide sequences of these genes from unrelated P. aeruginosa isolates in different geographical locations showed 2 to 7 nucleotide changes compared to the nucleotide sequence of the blaOXA-50 gene (32). Most of these nucleotide changes remained silent, and only a few led to amino acid changes (Table 3). The deduced amino acid sequences of these oxacillinases showed 98 to 100% identity (Table 3). The low nucleotide substitution rate of the blaOXA-50-like genes corresponded to that found for ampC-like ß-lactamase genes in that species (99.6% identity) (5, 14, 31).
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TABLE 3. Comparison of amino acid sequences of the chromosome-encoded oxacillinases of several P. aeruginosa isolates
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Biochemical properties of OXA-50.
After purification, the specific activity of the ß-lactamase
OXA-50 against nitrocefin was 75.5 U/mg of protein, and its
purification factor was 47-fold (Table
4). On SDS-PAGE, the
purified protein appeared as single band of ca. 25 kDa and was
estimated to be >95% pure (Fig.
2). N-terminal amino acid
sequencing of the mature protein revealed that the cleavage
site for the leader peptide is between amino acid positions
18 and 19 (A-SEWND). OXA-50 had a narrow-spectrum hydrolysis
profile that included ampicillin, benzylpenicillin, cephaloridine,
cephalothin, nitrocefin, piperacillin, and, surprisingly, imipenem
(Table
5). OXA-50 did not significantly hydrolyze moxalactam
or meropenem, although parental strain
P. aeruginosa PAO1 harboring
the multicopy plasmid pBB-1 had decreased susceptibilities to
moxalactam and meropenem (Table
1).
Hydrolysis of oxacillin or cloxacillin by OXA-50 was not detected,
as is the case for ß-lactamase OXA-24 (
3). The
kcat/
Km values were low for all ß-lactams except benzylpenicillin
and nitrocefin; this was mostly due to the low affinity (high
Km) of this enzyme for these substrates. The best affinity was
obtained for imipenem (
Km, 19 µM). The level of imipenem
hydrolysis was very low. Compared to carbapenem-hydrolyzing
oxacillinases, the catalytic activity (
kcat) for imipenem was
twofold lower for OXA-50 than for OXA-40 and the affinity of
OXA-50 for imipenem was similar to those of OXA-27 (
1) and OXA-24
(
3). Surprisingly, hydrolysis of meropenem was very weak, although
the MICs were significantly increased for
P. aeruginosa PAO1(pBB1)
and
P. aeruginosa KG2505(pBB1) (Table
1). Hydrolysis of meropenem
was detected at a very low level, as is the case for OXA-25,
OXA-26, and OXA-27; and the weak affinity of OXA-50 for this
substrate did not allow determination of a
kcat value. OXA-50
was found to have similar weak affinities for other substrates,
such as ampicillin, ticarcillin, piperacillin, cephaloridine,
cefsulodin, moxalactam, and oxacillin (Table
5). Biphasic kinetics
were seen for ampicillin, cefsulodin, and piperacillin. For
these substrates,
kcat and
Km were determined for the steady-state
part of the kinetics (the second part of the curve). As described
for OXA-10 (
9,
15,
21), CO
2 may strongly influence the kinetics
of oxacillinases. In the case of OXA-50, NaHCO
3 transformed
the hydrolysis to a linear curve only for cefsulodin, whereas
biphasic turnover kinetics were still observed for ampicillin
and piperacillin. Kinetic parameters were also determined for
cefsulodin in the presence of 10 mM NaHCO
3. Since the
Km value
was still very high for these substrates, the
kcat/
Km value
could not be determined more precisely. The specific activities
of all ß-lactams with and without sodium bicarbonate
were compared. Addition of NaHCO
3 did not significantly modify
the catalytic efficiency of OXA-50 except for catalytic efficiencies
for imipenem and meropenem, for which the specific activities
were increased by 4.5- and 2.5-fold, respectively (data not
shown). As for cefsulodin,
kcat and
Km values for imipenem were
both increased after bicarbonate addition, resulting in a
kcat/
Km value that remained almost unchanged (data not shown).
Studies of activity inhibition, as measured by determination of IC50s, showed that OXA-50 is weakly inhibited by clavulanic acid (500 µM), tazobactam (350 µM), and sulbactam (>2 mM), as is found for most of the oxacillinases (17). OXA-50 was inhibited by NaCl (IC50, 50 mM), as is observed for most oxacillinases (17).
This study indicates that P. aeruginosa harbors two chromosomally and naturally encoded ß-lactamase genes; the first one encodes an inducible cephalosporinase (class C) (14), whereas the second one encodes a constitutively expressed oxacillinase (class D). Both ß-lactamase genes display minor strain-to-strain variations (5, 31), suggesting their possible use in combination for PCR-based P. aeruginosa identification. The oxacillinase may not contribute significantly to the overall ß-lactam susceptibility pattern of P. aeruginosa except for that to moxalactam. Furthermore, as opposed to most oxacillinase genes, the blaOXA-50-like genes were not part of class 1 integrons, and unlike the chromosomally located and naturally occurring oxacillinase genes from Aeromonas spp. (17, 28) and Ralstonia pickettii (19), blaOXA-50 gene expression was expressed constitutively. Finally, this work underlines the fact that an important reservoir of oxacillinase genes is likely gram-negative environmental species such as R. pickettii (19), Aeromonas spp. (28), Shewanella spp. (25), and now P. aeruginosa.

ACKNOWLEDGMENTS
We thank N. Gotoh for providing
P. aeruginosa strain KG2505.
We are indebted to Laurent Poirel, who was at the origin of
this study.
This work was funded by a grant (UPRES-EA3539) from the Ministère de l'Education Nationale et de la Recherche, Université Paris XI, Paris, France, and by the European Community (6th PCRD, LSHM-CT-2003-503-335).

FOOTNOTES
* Corresponding author. Mailing address: Service de Bactériologie-Virologie, Hôpital de Bicêtre, 78 rue du Général Leclerc, 94275 Le Kremlin-Bicêtre cedex, France. Phone: 33-1-45-21-36-32. Fax: 33-1-45-21-63-40. E-mail:
nordmann.patrice{at}bct.ap-hop-paris.fr.


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Antimicrobial Agents and Chemotherapy, June 2004, p. 2043-2048, Vol. 48, No. 6
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.6.2043-2048.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
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