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Antimicrobial Agents and Chemotherapy, July 2004, p. 2558-2569, Vol. 48, No. 7
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.7.2558-2569.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Nestlé Research Center, Nestec Ltd., Vers-chez-les-Blanc, CH-1000 Lausanne 26, Switzerland,1 The Evergreen State College, Olympia, Washington 98505,2 ICDDR,B: Centre for Health and Population Research, Dhaka 1000 Mohakhali, Dhaka 1212, Bangladesh3
Received 21 July 2003/ Returned for modification 4 November 2003/ Accepted 26 February 2004
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An ideal candidate for phage therapy of E. coli infections is the coliphage T4 family. T4 is arguably the best-characterized biological system (25). This phage family is a natural component of the mammalian gut and can be easily isolated from the environment (stool and sewage) (1, 20, 21, 29). The richest sources of T4-like phages are apparently stools of diarrhea patients (20, 21). T4-like phages can be grown to high titer on laboratory E. coli strains. Early during the infection cycle T4 degrades the host DNA to the nucleotide level, preventing any integration of phage DNA into the bacterial chromosome (lysogeny) (34). T4 and a number of related phages have been completely sequenced (http://phage.bioc.tulane.edu/) (33), and no phage-associated bacterial virulence factors have been detected in these phages.
Despite these assets of the T4 phage system, the potential of bacteriophage therapy in human infections has not yet been carefully documented in scientific publications. Part of the academic community is therefore still "phage skeptic." They point to the experience that the tremendous in vitro lytic activities of coliphages was rarely, if ever, demonstrated in carefully documented in vivo situations. In fact, not much is known about the factors governing the phage-bacterium interaction in the context of the complex microbial environment of the mammalian gut. To help fill this gap, we report here on the gastrointestinal passage of a set of orally applied T4-like phages in mice. In addition, we studied their in vivo bacteriolytic activities on the resident gut E. coli flora and towards E. coli strains introduced into the gut.
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10g) was
resuspended in TS (NaCl [8.5 g/liter], tryptone [1
g/liter]) to a final volume of 30 ml and centrifuged for 15 min at
14,500 x g in 50-ml Falcon tubes. One
milliliter of each stool preparation was filtered through a Millex AP20
prefilter followed by a 0.45-µm-pore-size Minisart filter.
Subsequently, the samples were stored at 4°C. Phage JSD.1 was
isolated from environmental water in Dhaka, Bangladesh, and phage JSL.6
was isolated from a sewage station in Vidy (Lausanne), Switzerland.
Fifty milliliters of water samples was centrifuged at 10,000 rpm for 15
min and filtered through a 0.45-µm-pore-size Minisart
filter. The presence of phages was screened on the laboratory strain K803 (a K-12 derivative lacking prophage lambda, described in reference 5). The strain lacks restriction-modification systems and prophage lambda. K-12 is one of the major strains that have been widely used for phage studies as well as for recombinant DNA work. It is susceptible, for example, to nearly all of the over 100 T4-like phages in the Evergreen collection, most of which were isolated on E. coli B or on some pathogenic strain. The K803 strain was propagated in Hershey broth (prepared according to the recipe in reference 26) at 37°C with agitation (240 rpm). After overnight growth, the strains were streaked on a Hershey agar petri dish. Each time needed, a new culture was grown from a single colony. The stock cultures were kept as stab cultures at 4°C.
Spot testing was done on Hershey plates (15 g/liter agar) overlaid with 3.5 ml of Hershey top agar (7.5 g/liter). Ten microliters of filtered samples was put as eight spots in clockwise distribution around the plate after the top agar with plating bacteria solidified. For phage plaque assays, top agar (7.5 g/liter) was inoculated with 200 µl of a fresh overnight culture and 100 µl of positive sample and incubated overnight at 37°C
One well-separated phage plaque was chosen for amplification from each positive stool sample, picked with a sterile toothpick, and inoculated into 5 ml of Hershey broth together with 1% of an overnight culture of the E. coli strain K803. Incubation was performed with agitation at 240 rpm at 37°C. When lysis occurred, 3 drops of chloroform was added. The lysate was left overnight at room temperature followed by centrifugation at 14,500 x g for 10 min. The supernatant was transferred into a screw-cap glass tube. Three drops of fresh chloroform was added, and the phage stock was stored at 4°C. The phage lysate was at least diluted 1,000-fold into mineral water for the mouse feeding experiments.
Lysis in tube. The lysis test was done as follows. Five milliliters of Hershey broth (23) was inoculated with 1% of a freshly grown culture (109 CFU/ml) and 1% phage lysate (108 PFU/ml). Incubation at 37°C was continued under aerobic conditions in a shaking incubator (240 rpm) for 3 to 5 h until the uninfected control cells reached the stationary growth phase. The optical density (OD) in the phage-inoculated cell was compared to that of mock-infected control cells. For anaerobic conditions, tubes were held in an anaerobic jar at 37°C for 5 to 10 h. The media were not prereduced; there was thus significant oxygen present during the early hours of the experiment.
Broth culture of phages. E. coli was inoculated 1:100 in 200 ml of Hershey medium and incubated at 37°C in a shaking incubator (240 rpm). When an OD at 600 nm of 0.1 was reached, stock phages were inoculated with 107 PFU/ml. Each 15 min, samples were taken and OD readings of infected and uninfected cells were done at 600 nm. Samples were then centrifuged (10,000 x g, 5 min, 20°C), and chloroform-treated phage was titrated in the supernatant.
Pathogenic E. coli strains. The tested collection of pathogenic E. coli strains included 12 enteropathogenic E. coli (EPEC) strains, representing the major serotypes isolated worldwide from pediatric diarrhea patients (41). This set of strains covered 10 different somatic O antigens and 10 different capsular K antigens (Table 1). In addition, the collection contained 12 major ETEC serotypes isolated from either pediatric gastroenteritis patients or adults suffering from traveler's diarrhea (Table 1). The ETEC strains represented 11 further O antigens, 10 distinct H antigens, and various combinations of heat-stable (ST) and heat-labile (LT) toxin producers (Table 1). These 22 pathogenic E. coli strains were obtained from B. Rowe (Central Public Health Laboratory, London, United Kingdom). Twelve further distinct ETEC and six EPEC strains were obtained from the microbiology laboratory of the International Center for Diarrheal Disease Research. They represent predominant E. coli isolates from their hospitalized pediatric diarrhea patients. The pathogenic E. coli strains from Dhaka were typed by DNA probes for the presence of ST and LT enterotoxin, ST, colonization factor antigen (CFA), E. coli surface antigens (CS), and the attaching-effacing genes (A/E) (Table 1) according to published methods (5, 17, 24).
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TABLE 1. Susceptibilities
of E. coli strains to infection with T4-like phages
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Electron microscopy. A drop of the phage suspension was applied to a Formvar carbon-coated copper grid for 5 min; the suspension was removed with a pipette and immediately replaced by a mixture of solutions A and B (solution A, 2% ammonium molybdate at pH 7.0 or 2% PTA; solution B, 11% bacitracin in distilled water) or a solution of 3% uranyl acetate. After 1 min the liquid was removed with a filter paper. The grids were examined in a Philips CM12 transmission electron microscope at 80 kV (magnification, x176,000 or x224,000). The dimensions of the phage were calibrated with T4 phage particles (25).
DNA purification. Purified phages were treated with proteinase K at a final concentration of 1 mg/ml for 2 h at 37°C, and 3 M sodium acetate (pH 4.3) was added. DNA was extracted twice by phenol-chloroform and precipitated with 2 volumes of ethanol. After centrifugation, pellets were washed with 70% ethanol and resuspended in 50 µl of Tris-EDTA. DNA was digested with restriction enzymes according to the instructions provided by the manufacturer.
Experimental animals. Eight-week-old C3H male mice (Charles River, St. Germain sur l'Arbre, France) were held under standard animal house conditions and fed irradiated 03-40 chow from Usine dAlimentation Rationelle (Villemoissin-Orge, France). The drinking water, which did or did not contain phage at the specified titer, consisted of Vittel mineral water. We initially used this water since it contained bicarbonate at 258 mg/liter, reasoning that bicarbonate would buffer the stomach acidity and allow more efficient stomach passage of the phage. However, in later experiments we observed that mineral waters containing less bicarbonate (65 mg/liter) allowed an equally efficient gut passage of the phage (data not shown). The mineral water was changed every two days. Feces were sampled once a day directly from the hand-held animal into a sterile tube by gently pressing the abdomen of the animals to avoid contamination of the stool with bedding material or dripping from the water bottles. For each experimental series, five mice were used. Each mouse was held in a Makrolon type 3 cage with a filtered lid (Indulab, Gams, Switzerland), preventing cross-contamination between the cages. Stool samples were resuspended in 1 ml of phosphate-buffered saline. Tenfold dilutions of the resuspended feces were plated on Drigalski agar (Bio-Rad). This is a medium recommended for coproculture (Diagnostics Pasteur). The medium is not specific for E. coli but allows the differentiation of lactose-fermenting colonies (E. coli, Klebsiella, Enterobacter) yielding yellow colonies from lactose-nonfermenters (Salmonella, Shigella, Proteus, Providencia, Hafnia, Serratia, Levinea, Edwardsiella, Alcaligenes, Pseudomonas) yielding blue-green colonies (Diagnostics Pasteur). Practically all colonies from mouse fecal pellets were lactose positive. Since Klebsiella and Enterobacter species do not belong to the normal mouse fecal flora (52), the yellow colony count is practically an E. coli count. This diagnosis was confirmed by phage susceptibility: practically all colonies were lysed by one of the T4-like E. coli phages from our collection (see Results). We confirmed that the T4-like phages did not lyse a distinct genus of Enterobacteriaceae, for example, the food pathogen Enterobacter sakazaki (P. Breeuwer, unpublished results). The various T4-like phages were added to the drinking water in dilutions as specified in the text. In the experiments four mice received mineral water with phage while one negative mouse control in each experiment received only mineral water. Phages were titrated by the plaque assay in filtered fecal samples on the E. coli indicator cell K803. At the end of the experiment, the mice were sacrificed and standard gross anatomical and histopathological examinations were conducted. Different parts of the gut were rinsed with physiological salt before cells and phages were counted by colony and plaque assay.
Mouse experiments with ampicillin-resistant cells. E. coli K803 was grown in Hershey broth to an OD (600 nm) of 0.7. Cells were centrifuged for 20 min at 4,500 rpm. The pellet was carefully resuspended in cold H2O (4°C). The cells were then washed twice with cold 10% glycerol. Finally the pellet was resuspended in 1 ml of cold glycerol and kept at 80°C as competent cells.
One hundred microliters of cells was electroporated with
0.5 ng of pUC18 using the following settings: 25 µF, 2.5 kV,
and 200
. The cells were incubated for 1 h in SOC
(2% tryptone, 0.5% yeast extract, 10 mM NaCl, 2.5 mM KCl,
10 mM MgCL2, 20 mM Mg SO4, 20 mM glucose) medium
at 37°C and plated on Hershey agar containing 20 µg of
ampicillin.
The experiments with the Ampr cells were conducted with a total of 21 animals, i.e., three groups of seven mice per experiment. In each experiment, three mice received the Ampr cells without phage, three received Ampr cells and phage in the drinking water, while one mouse received phage orally but no Ampr cells. Six-week-old C3H male mice were taken for the experiment. The three experiments differed with respect to addition of oral ampicillin (experiment 1, no ampicillin; experiment 2, ampicillin was given together with Ampr cells; experiment 3, ampicillin was given first, followed by Ampr cells). Their drinking water consisted of Vittel supplemented with the four-phage cocktail (106 PFU/ml) and ampicillin (20 mg/ml) as specified in the text. The animals were force fed with ampicillin-resistant K803 (5 x 107 CFU) supplemented with 6 mg of ampicillin as specified in the text. Feces were sampled twice a day for the first 4 days and once a day for the rest of the study. Tenfold dilutions of resuspended feces were plated on Drigalski agar containing 20 µg per ml of ampicillin.
Axenic mice. A total of six 8-week-old C3H axenic male mice from our own animal house breeding colony were allotted to three experiments. Each group consisted of two animals held under sterile conditions in a Makrolon type 2 cage maintained in the same cage without a filtered lid within a positive pressure isolator of the animal house. In experiment 1 mice were force-fed with E. coli K803 (0.5 ml at a concentration of 108 CFU/ml) using intubation. Daily fecal samples were investigated for E. coli cell counts on Drigalski plates. One week after colonization, sterile-filtered phage JS94.1 was given continuously at a concentration of 105 PFU/ml in the drinking water followed by daily fecal cell and phage counts. In the next week a second force-feeding was performed with E. coli ECOR5 followed two weeks later by force-feeding with ECOR56. In experiment 2 mice received cells and phage at the same time, while in experiment 3 the mice received first the phage and then the bacteria.
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FIG. 1. Four
T4-like phages used in the mouse experiments. (A)
Transmission electron microscopy picture of CsCl density
gradient-purified bacteriophage JS4 (a), JSD.1 (b), JSL.6 (c), and
JS94.1 (d). Negative staining was performed with uranyl acetate (c),
ammonium molybdate (a and d), or phosphotungstic acid (c). The size bar
corresponds to 100 nm. (B) Restriction analysis of phages
(for lanes a to d, see corresponding subpanel in panel A; lane e, phage
T4) with enzyme DraI. Lane M, DNA size marker (1-kb lambda DNA ladder;
Invitrogen).
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FIG. 2. Lysis
of E. coli K803 strain by the four T4-like phages in broth
culture. (A) OD development of an uninfected control culture
(K-12) and parallel cultures infected with phages JS94.1, JS4, JSD.1,
and JSL.6. (B) Progeny phage release from the four
phage-infected cultures depicted in panel A. Phage infectivity was
measured by plaque
assay.
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In the next step, we explored the in vitro lytic activities of the four phages on the endogenous E. coli gut flora from a group of ten conventional adult mice. Over a 10-day observation period, feces were recovered every day for each mouse and lactose-positive yellow colonies were counted on Drigalski agar plates. The fecal cell counts showed an average of 106 CFU/g (data not shown), which is in agreement with similar results obtained by Poulsen et al. (39). Five random colonies were selected per day for each mouse, and the total of 500 colonies was tested against the four phages in the spot test to reduce the workload. Between 85 and 100% of the tested colonies were lysed by phages JS4 and JSD.1. JSL.6 lysed about 80% of the colonies. More variation was observed with phage JS94.1, which lysed less than 40% of the isolated murine E. coli gut strains in six animals. When the results were combined, practically all cells were lysed by one of the E. coli phages, confirming the attribution of the vast majority of the yellow colonies from the feces of conventional mice to E. coli. One fecal sample of each mouse was tested over 5 days for the presence of phage on the K803 indicator cell in the plaque assay. No phage plaques were detected.
Effect of oral phage on fecal E. coli count in mice. Next we wanted to determine the threshold for an in vivo lytic effect of orally applied phages on the intestinal E. coli population in laboratory mice. To this end the four phages were added as a cocktail to the drinking water of 10 mice in increasing doses separated by 3 days of phage-free drinking water. Substantial variation was seen for the lactose-positive cell count on the Drigalski plates in all animals, even before phages were added to the drinking water. This variation was also seen during the periods of phage feeding to the animals. Using a two-way analysis of variance with phage dose as a fixed factor and animals as a random factor, we derived the following means and standard errors of the means for fecal colony counts on Drigalski plates: for water only, 106.2 ± 0.04; for 103 phage/ml, 105.9 ± 0.10; for 105 phage/ml, 106.1 ± 0.06; for 107 phage/ml, 105.7 ± 0.06. The effect of the phage dose on the cell count was highly significant (P value < 0.0001) but was in absolute terms very small and thus biologically not significant.
In view of the in vitro phage susceptibility of the most prevalent lactose-positive fecal colonies on Drigalski agar, the lack of a bacteriolytic effect of the oral phage on the fecal cell count was surprising. We considered several hypotheses to explain this observation. First, under the selective pressure of the phages the prevalent phage-susceptible strains might have been replaced by phage-insensitive strains. Second, without protection (antacid or microencapsulation) phages might not survive the gastric passage and thus not be available in the intestine. Third, phages might be present in the gut, but for physiological reasons the endogenous intestinal E. coli cell population resists phage infection.
The first hypothesis was addressed by the isolation of 100 additional lactose-positive colonies from the feces of two animals during the phage treatment period. The colonies showed a comparable phage susceptibility pattern before and during the phage treatment period, leading to the rejection of the hypothesis of an intestinal outgrowth of phage-resistant E. coli or other Enterobacteriaceae under the selective pressure of the oral phages.
Gastrointestinal passage of orally applied phages. The following experiments demonstrated that unprotected T4-like phages could survive the gastric passage in conventional adult laboratory mice. These experiments refute the second hypothesis.
To begin, we determined the lowest phage concentration leading to stable fecal phage excretion. To this end four animals received in the drinking water successively the four individual phages added at 10-fold dilution steps. Fecal phage titers decreased with the titer of the phage in the drinking water in an approximate dose-response pattern (Fig. 3). With the lowest phage concentration of 103 PFU/ml in the drinking water, only low fecal phage titers over short time periods were observed, while exposure to 104 PFU/ml resulted in fecal phage detection nearly over the entire exposure period (Fig. 3).
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FIG. 3. Gastrointestinal
passage of the orally added phages in conventional mice. Fecal phage
titer after oral addition of the specified phage strain at
106 (circles), 105 (diamonds), 104
(squares), and 103 (bars) PFU/ml, fed to four mice at the
times indicated by the shaded bars at the bottom of the figure. The
triangles give the phage titers for the control mice. The periods of
phage-free drinking water are indicated by white
boxes.
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Next we asked whether the stool phage isolates could not infect their host cells due to the anaerobic atmosphere of the gut environment. This was not the case: during in vitro growth in an anaerobic jar, 11 of 32 T4-like stool phage isolates and one of the four test phages (JSL.6) lysed its target cells under both anaerobic and aerobic conditions.
Finally, we asked whether phages could be given repetitively without interference by an intestinal immune response. Phage JS94.1 was given three times to two mice. Each intervention was followed by a 2-week rest period. In each case infectious phage was detected in the stools samples with titers approximately proportional to concentration of the phage in the drinking water (data not shown).
Phage treatment of axenic mice. To test the in vivo lytic activities of the isolated stool phages, we inoculated two axenic mice with a single E. coli strain, namely, the indicator cell K803, resulting in a cell concentration of 108 CFU/g of feces (Fig. 4A). One week later, the K803-colonized mice were exposed to phage JS94.1 at 105 PFU/ml in the drinking water. Within a day, the fecal phage titer in the JS94.1-exposed mice rose from undetectable titers to beyond 1010 PFU/ml (Fig. 4A). The 100,000-fold titer increase with respect to the phage concentration in the drinking water documented an active replication of phage JS94.1 in the guts of the experimental animals. Concomitantly, the fecal E. coli cell count dropped from 108 to 104 CFU/ml or even lower, documenting a substantial in vivo bacteriolytic activity of the orally applied phage (Fig. 4A). Despite this serious drop in host cell density, the very high fecal phage titers decreased only slowly over the next four days. Interestingly, over the same time period the fecal cell count increased from undetectable levels to about 105 CFU/ml, which is still 1,000-fold lower than the original fecal cell count. At days 9 and 11, several dozen colonies were picked. All were sensitive to phage JS94.1 suggesting that some of the cells are now in gut sites protected from phage.
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FIG. 4. Effect
of oral phage on the inoculated E. coli strain in axenic mice.
(A) Fecal E. coli counts (solid line in log CFU per
milliliter) and fecal phage counts (dashed line in log PFU per
milliliter) in two axenic mice exposed to the specified E.
coli strains, phage JS94.1, or water at the specified time points;
the start day is indicated with an arrow below the abscissa. A black
line with squares or a gray line with triangles identifies values from
an individual mouse. (B) 106 PFU/ml was given from
day 1 in the drinking water to axenic mice lacking intestinal bacteria.
The mice were force-fed with 104 CFU of K803 at day 8.
Logarithmic fecal cell (solid line) and phage counts (dashed line) per
gram of stool were plotted over 10 days. A black line with squares or a
gray line with triangles identifies values from an individual
mouse.
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In the next experiment, two axenic mice were force-fed with 104 K803 cells and received at the same time the four-phage cocktail at 106 PFU/ml in the drinking water (data not shown). One mouse showed an initial high fecal cell count (109 CFU/g of feces), followed by a precipitous drop to 104/g and lower. Another mouse showed a fecal cell count decrease from 106 to 104 CFU/g (data not shown). Both mice showed a fecal titer 1,000-fold higher than the drinking water phage titer over the first days of the experiment, suggestive of active in vivo phage replication.
Finally, two axenic mice were first exposed to the four-phage cocktail at 106 PFU/ml in the drinking water before receiving cells. Notably, in the absence of intestinal bacteria, 106 PFU of phages were also detected per g of stool (Fig. 4B), demonstrating that the fecal phages are not the result of intestinal replication of phages after a reduction of phage titers in the stomach, but the consequence of a passive transit through the entire gastrointestinal tract including the stomach. One week later the mice were force-fed with 104 K803 cells. Introduction of E. coli into the gut resulted in a transient 1,000- to 10,000-fold fecal phage titer increase (Fig. 4B). During the initial phase of intestinal phage replication, a low and variable fecal cell number was observed. This phase was followed by a steady increase of bacteria to 109 CFU/g stool over the next days (Fig. 4B), and bacteria remained at this level until 2 weeks later (data not shown), while the phage titers dropped to low levels.
Follow-up of Ampr E. coli cells in conventional mice. The preceding experiments suggested that orally applied phages lysed only E. coli cells that were recently introduced into the intestine. To differentiate newly introduced from resident E. coli strains, 108 CFU of K803 cells transformed with plasmid pUC18 containing an ampicillin resistance marker were force-fed to three conventional mice. Transient peaks of fecal Ampr E. coli cells were detected half a day after the force-feeding, but they were lost from the intestine half a day later (data not shown). No spontaneous fecal phage excretion was seen in these mice or the corresponding control mice of the experiments reported below. Three further mice received in addition 106 PFU of phage per ml in the drinking water. As in the preceding experiment, fecal Ampr E. coli cells were only transiently observed directly after the force-feeding (data not shown). Phage was detected only during the phage feeding period with a 1-day time lag for appearance and 2 days for disappearance.
To overcome the colonization resistance of the resident intestinal flora against the introduction of new cells, the Ampr-labeled cells were given together with ampicillin during the force-feeding. During the first week ampicillin was also added to the drinking water (20 µg/ml). Under these conditions, 103 to 105 CFU of the Ampr E. coli cells were detected per g of stool and for at least 5 days maintained after omission of ampicillin from the drinking water (Fig. 5A). When similarly treated mice received phage in addition in the drinking water, Ampr E. coli cells were detected after day 2 only in two fecal samples with low counts, suggesting elimination of Ampr E. coli from the gut (Fig. 5B) by oral phage.
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FIG. 5. Effect
of oral phage on the introduction of ampicillin-resistant E.
coli in mice. (A) Fecal cell counts in three mice
force-fed with 5 x 107 CFU of ampicillin-resistant
E. coli and ampicillin (A/E) at the time points marked with an
arrow below the time axis. The ordinate shows the logarithm of CFU per
gram of stool. Each vertical bar represents the fecal cell count for
one animal at the specified time point. (B) The same
experiment as depicted in panel A except that in addition to ampicillin
the mice also received the phage cocktail at 106 PFU/ml in
the drinking water. The rightmost black data points refer to a control
mouse not receiving ampicillin-resistant E.
coli.
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FIG. 6. Effect
of oral phage on the introduction of ampicillin-resistant E.
coli in mice pretreated with ampicillin in the drinking water.
(A) Seven mice received ampicillin by force-feeding at day 1
and in the drinking water throughout the experiment. At the time points
indicated with arrows marked with A/E, six mice were force-fed with
ampicillin and ampicillin-resistant E. coli (a control mouse
received only buffer instead of E. coli). Both groups of mice
received ampicillin in the drinking water, but some mice were in
addition exposed to 106 PFU/ml of the phage cocktail in the
drinking water (B). Both panels show the fecal counts of
ampicillin-resistant cells. The rightmost black data points in panel B
refer to a control mouse not receiving ampicillin-resistant E.
coli.
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For the
experiments reported here we selected two stool- and two environmental
water-derived T4-like phage isolates with a broad host range for
diarrhea-associated E. coli serotypes. The chosen T4-like
phages survived the gastrointestinal transit in adult mice. More
specifically, the fecal phage count corresponded roughly to the orally
applied phage titer. This quantitative correlation should on its own
not be overinterpreted since it could represent a combination of
inactivation of some phage in the stomach and the reproduction of some
phage in the endogenous intestinal E. coli population.
However, no major inactivation of T4-like phages occurred in the
stomachs of adult mice since in axenic mice (lacking any intestinal
microbial flora and thus the possibility to amplify phage), a similar
oral-fecal phage titer correlation was found. Unprotected T4-like phage
thus has the capacity to transit the entire gastrointestinal tract
without appreciable infectivity loss. When compared to the timing of a
pulse of phage in the drinking water, the appearance and disappearance
of the phage in the feces took approximately 1 to 2 days. If coprophagy
(the eating of feces, which in contrast to rabbits, was only
occasionally observed in mice from our animal house) or water dripping
from the bottles into the cage and not the orally applied phage were
the source for maintenance of fecal phage titers in mice, one would
have expected longer fecal phage disappearance times due to phage
recycling. Notably, fecal pellets were not collected from the bedding
of the cages excluding passive phage contamination. The murine stomach
differs substantially from the human stomach by allowing the thriving
of an endogenous Lactobacillus flora in the esophagus-proximal
part, showing a mean pH value of 3.8
(52). However, in the
pylorus-proximal part of the murine stomach the mean pH value was only
2.2 (52). This acidity
killed 95% of acid-sensitive bacteria like Vibrio
cholerae and half of the fragile E. coli mutant
1666, but had little bactericidal effect on E. coli
K-12 (19).
In the case of E. coli diarrhea, a peculiar problem for phage therapy is presented by the fact that nonpathogenic E. coli strains are a normal constituent of the gut flora of humans and many animals (52). The in vivo experiments demonstrated that collateral damage on nonpathogenic gut E. coli strains is an unlikely complication of oral application of T4-like phages. In conventional mice we observed no detrimental effect of the phage transit on the physiological E. coli flora. The total count of lactose-positive fecal colonies on the Drigalski plates decreased only slightly during phage treatment. No change from phage-sensitive to phage-resistant E. coli was seen, as if the cells had not experienced a phage infection pressure. In addition, in conventional mice we did not observe evidence for intestinal phage replication. Two basic hypotheses might explain this result. First, the intestinal E. coli cells might be in an altered physiological state (stationary state, starvation, anaerobic growth) that does not permit phage infection. Alternatively, physical factors might prevent the infection of the resident intestinal E. coli flora (reduced phage diffusion in the thickened gut content, difficulty for the phage in finding its target cell in the presence of a large excess of nontarget bacterial cells, and seclusion of the resident E. coli in a nonaccessible niche). Anaerobic growth prevented the in vitro growth of some, but by far not all, T4-like phages. However, residual oxygen was not rigorously excluded in these experiments. Nevertheless, in vivo growth of phages was demonstrated in axenic mice excluding anaerobiosis as a major limiting factor for phage replication.
Data from the literature help to understand the lack of activities of the orally applied T4-like phages on the resident E. coli flora. Fluorescent oligonucleotide probes targeting rRNA were used to localize E. coli cells in the large intestines of mice by the in situ hybridization technique. E. coli cells were seen embedded in the mucosal material overlying the epithelial cells of the large intestine, and no direct attachment to the epithelium was observed (39). Extension of these studies revealed that E. coli consisted in the murine intestine of two populations, one in the mucus which has an apparent generation time of 40 to 80 min and one in the luminal contents which is static (40). Interestingly, a defined E. coli strain when introduced into the murine intestine differentiated into two distinct populations, one that has the characteristics of the laboratory-grown strain and one that appears as a coccoid cell. The authors observed natural selection for the coccus-type cell in the intestine and for the rod-shaped E. coli cell in laboratory medium growth (27).
On the basis of our observations and the literature data, the most conclusive interpretation is the following. Orally applied T4-like phages pass the stomach and intestine as efficiently as E. coli K-12. Transit times of less than a day without amplification or death were reported for radiolabeled K-12 (19) and confirmed by us with Ampr-labeled K-12. The phage meets the viable but nongrowing E. coli in the gut lumen which we counted in the feces. The metabolic state (of starvation?) in this intestinal E. coli population does not permit phage replication. On laboratory media the cells resume growth and become fully susceptible to phage infection. We suspect that the E. coli cells growing as microcolonies in the mucin layer (52) are physically protected against phage infection. However, this cell population might only show up to a limited extent in the fecal flora. It will be interesting to scrape the mucin layer from the large intestines of sacrificed mice and test their E. coli population for T4 phage susceptibility in media supplemented with cecal mucus (35).
Our experiments provide, however, clear evidence that E. coli recently introduced into the murine intestine is susceptible to phage infection. This was demonstrated in both conventional and axenic mice. In conventional mice, the colonization resistance of the resident intestinal flora had to be upset by the feeding of an antibiotic. This treatment permitted an at least temporary foothold to the externally added ampicillin-resistant K-12 E. coli cell even after the cessation of ampicillin feeding. Orally added phage prevented the fecal appearance of ampicillin-resistant K-12 E. coli cells over the observation period, suggesting the in vivo lysis of the added E. coli cells. In axenic mice inoculated with K-12 cells, the orally added phage had a lytic effect on the cells when given before, concomitant with, and after feeding of the cells. However, after a transient lytic phase, E. coli cells were again observed in the fecal samples. It is not clear what factor prevented the phage from permanently clearing the intestine of E. coli. Without the competition of other intestinal bacteria, K-12 might achieve in axenic mice an association with the mucus layer and thus escape phage infection. However, in axenic mice the outgrowth of the cells did not reach the original cell titers. Only when phage-resistant cells were fed in a second wave were the initial high fecal E. coli titers achieved, suggesting that the first E. coli strain remained under phage control.
The success of the phage therapy approach against E. coli diarrhea hinges on the in vivo phage susceptibility of the infecting pathogenic E. coli strains. As pathogenic E. coli targets the small intestine and does not colonize the intestine beyond the acute phase of diarrhea, it is unlikely that EPEC or ETEC strains occupy the phage-resistant niche of the resident E. coli strains in the large intestine. The effectiveness of phages in treating experimental E. coli diarrhea in mice, calves, piglets, and lambs (45, 46) suggests strongly that pathogenic E. coli is susceptible to orally applied phage.
We thank Andreas Rytz for statistical advice.
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