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Antimicrobial Agents and Chemotherapy, August 2004, p. 3057-3063, Vol. 48, No. 8
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.8.3057-3063.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Microbiology Group, Department of Biological Sciences, Illinois State University, Normal, Illinois 61790-4120
Received 7 October 2003/ Returned for modification 19 December 2003/ Accepted 1 April 2004
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It is well accepted that cell wall-active antibiotics inhibit bacterial growth by inhibiting peptidoglycan biosynthesis (49). It is becoming clear that upon treatment with cell wall-active antibiotics, S. aureus and other bacteria undergo an extensive program of gene and protein expression. Using a proteomic approach, Singh et al. (43) showed that a set of at least nine proteins was induced upon challenge of a mid-exponential- phase S. aureus culture with oxacillin and other cell wall-active antibiotics. One of the most strongly induced proteins was MsrA1, methionine sulfoxide reductase.
Recently, we used DNA microarray technology to capture a genome-wide picture of changes within the S. aureus transcriptome in response to challenge with cell wall-active antibiotics (48). A large number of genes in various functional categories were upregulated by oxacillin, bacitracin, and D-cycloserine. Several cell wall-related genes were induced by each of the three antibiotics, including pbpB, the gene that encodes the essential penicillin-binding protein 2 (PBP2). murZ was also upregulated; this gene encodes the enzyme UDP-N-acetylglucosamine-1 carboxylvinyl transferase-2, which catalyzes the first step unique to peptidoglycan biosynthesis. The cell appears to respond to cell wall-active antibiotics by attempting to increase the rate of peptidoglycan biosynthesis. The cell also appears to attempt to regulate cell wall-active antibiotic-induced autolysis by increasing the transcription of the regulators of autolysis, fmt and lytR, and decreasing the transcription of atl (48), which encodes the major S. aureus autolysin (32). The cell wall-related genes fmt, tca, and vraR were also shown to be upregulated by cell wall-active antibiotics. Interestingly, they have previously been encountered in the context of methicillin resistance (fmt) (21) and glycopeptide resistance (tca and vraR) (4, 23). vraSR encodes a putative two-component sensor response regulator pair that may be involved in signal transduction and control of gene expression.
Another functional category of upregulated genes was genes involved in posttranslational modification, in protein turnover, and as chaperones. msrA1 belongs to this category. Gene fusion analysis, Northern blotting, and transcriptional profiling have revealed that msrA1 is highly induced by cell wall-active antibiotics (43, 44, 48). Methionine sulfoxide reductases are oxidative defense proteins that reduce methionine sulfoxide residues in proteins to methionine and hence restore protein function (5, 26). S. aureus MsrA1 specifically reduces the S-enantiomer of methionine sulfoxide (27). MsrA is believed to contribute to the virulence of a variety of bacterial pathogens (10, 17, 50). It is not clear why msrA1 is induced in S. aureus specifically by cell wall-active antibiotics. Possibly, treatment with cell wall-active antibiotics results in oxidative stress to proteins. There are multiple genes encoding methionine sulfoxide reductase activity in S. aureus, and their regulation is complex (44, 46). Although an msrA knockout mutant showed increased susceptibility to hydrogen peroxide, an MRSA msrA1 mutant did not show increased oxacillin susceptibility (44).
In the present study we have studied the regulation of the expression of msrA1 in greater detail than before. We report here on the inducibility of msrA1 in a variety of methicillin-susceptible, methicillin-resistant, and mutant strains and on the role of SigB and signal transduction in msrA1 expression. In addition to yielding information specific to msrA1, the results carry implications for the regulation of expression of the cell wall stress stimulon as a whole.
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TABLE 1. Bacterial strains and plasmids used in this study
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Transduction of the msrA1 promoter::lacZ fusion construct into various S. aureus strains.
The fusion construct (PmsrA1::lacZ) was transduced into various S. aureus strains through phage 80 alpha transduction as described by Novick et al. (29). For preparation of phage 80 alpha lysate, RN4220 harboring the fusion construct was grown in TSB for 12 h and then diluted 100-fold in LK medium (tryptone, yeast extract, KCl) containing 10 mM CaCl2. After incubation at 37°C for 1.5 h, 1 ml of phage lysate propagated in RN4220 was added to the culture, which was then kept at 30°C until completely lysed (
10 h). The lysate was then filtered through a 0.45-µm-pore-size Millipore filter and stored at 4°C. Overnight-grown cultures of the desired strains were diluted 100-fold and incubated at 37°C for 1.5 h. Cells were harvested, washed once with 5.0 ml of TSB, and resuspended in 0.95 ml of TSB containing 5 mM CaCl2. Cells were infected with 50 µl of phage lysate prepared on RN450 (NCTC 8325-4) containing PmsrA1::lacZ and incubated at room temperature for 10 min and then at 30°C for 35 min. The cells were harvested, washed once with TSB, and resuspended in 7 ml of TSB at 37°C for 1.5 h. The resulting culture was centrifuged and resuspended in 1 ml of TSB, and transductants were selected on tryptic soy agar containing erythromycin (20 µg ml1).
RNA isolation and Northern blot analysis.
RNA isolation and Northern blot analysis were carried out as described earlier (44). Overnight-grown S. aureus cultures were diluted 100-fold in 2.5 ml of fresh TSB and were grown to an optical density at 600 nm (OD600) of 0.3. At this point, 1.2 µg of oxacillin or 300 µg of D-cycloserine or other antibiotics (selected concentrations) ml1 was added, and the cells, including antibiotic-free control cultures, were allowed to grow for 1.5 h. Cells were harvested by centrifugation, washed once in 20 mM Tris-HCl buffer (pH 7.5) containing 145 mM NaCl, and lysed in Tris-HCl buffer (pH 7.5) containing lysostaphin (50 µg ml1) for 10 min at 37°C. Total RNA was subsequently isolated by using a Qiagen RNeasy minikit (Qiagen). Equal amounts of RNA samples (10 µg) from each condition were run on a 1.2% denaturing agarose gel and then transferred to a nitrocellulose membrane. The radiolabeled msrA1 or other probes were prepared by using the Prime-a-Gene labeling system (Promega) in the presence of [
-32P]dCTP (specific activity, >3,000 Ci mmol1; ICN Pharmaceuticals, Inc., Irvine, Calif.) and used to probe the membrane.
Molecular genetic procedures. Plasmid and chromosomal DNA isolation, DNA manipulations, digestion of DNA with restriction enzymes, DNA ligation, oligolabeling, PCRs, and Northern blotting were performed as described by Novick (30) and Sambrook et al. (40). All enzymes were used as directed by the manufacturer.
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FIG. 1. Northern blot hybridization of the msrA gene with the total RNA isolated from various S. aureus strains treated with oxacillin (A) or D-cycloserine (B) and then probed with the radiolabeled msrA gene. S. aureus strains treated with oxacillin (A) were as follows: RN450 (lanes 1 and 2), SH1000 (lanes 3 and 4), RN7497 (lanes 5 and 6), H (lanes 7 and 8), and COL (lanes 9 and 10). Strains are the same for D-cycloserine treatment (B), except that Wood 46 rather than RN7497 is shown in lanes 5 and 6. The first lane is RNA from untreated cells, and the second is RNA from the antibiotic-treated cells. (C) Northern blot hybridization of msrA with total RNA isolated from S. aureus strains 13136 (lanes 1 to 3), DU4916 (lanes 4 to 6), and BB270 (lanes 6 to 9) and then probed with the radiolabeled msrA gene. Lanes 1, 4, and 7 are RNA from untreated cells; lanes 2, 5, and 8 are RNA from cells treated with oxacillin; and lanes 3, 6, and 9 are RNA from cells treated with D-cycloserine.
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FIG. 2. Effect of cell wall-active antibiotics on the expression of ß-galactosidase in the S. aureus COL PmsrA1::lacZ reporter strain. At 2 h after antibiotic treatment, cells were harvested and the ß-galactosidase activity was determined. Error bars represent the standard deviations of triplicate experiments.
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FIG. 3. Analysis of transcription from PmsrA1::lacZ fusions in S. aureus RN450 ( ) and SH1000 ( ) in response to oxacillin, D-cycloserine, and vancomycin. At 2 h after antibiotic treatment, cells were harvested and the ß-galactosidase activity was determined. Error bars represent the standard deviations of triplicate experiments.
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FIG. 4. Northern blot hybridization of the msrA gene with the total RNA isolated from the S. aureus RN6390 agr and ALC136 sarA mutant strains treated with oxacillin (lanes 2 and 5) and D-cycloserine (lanes 3 and 6) and then probed with radiolabeled msrA1 probe. Lanes 1 and 5 are RNA from untreated cells.
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FIG. 5. Northern blot analysis of S. aureus SH1000 incubated with various antibiotics. RNA (10 µg) separated on a 1.2% denaturing agarose gel was analyzed with the radiolabeled msrA probe. Lane 1, control untreated; lane 2, oxacillin (1.2 µg ml1); lane 3, streptomycin (5 µg ml1); lane 4, tetracycline (2 µg ml1); lane 5, vancomycin (2.5 µg ml1); lane 6, chloramphenicol (2 µg ml1).
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Inhibition of msrA1 transcription by glycerol monolaurate (GML), an agent that interferes with signal transduction. Among various compounds screened for their ability to affect oxacillin-induced msrA1 transcription, one, the surfactant GML, was shown to inhibit the transcription of msrA1 at low concentrations. GML has previously been shown to inhibit the production of various staphylococcal proteins and virulence factors at the transcriptional level (36). GML was added in increasing concentrations to actively growing cultures with oxacillin, and inhibition of msrA1 expression was monitored by Northern blotting (Fig. 6A and B). Concentrations of GML as low as 25 µg ml1 added to an actively growing culture 1 h prior to addition of 1.2 µg of oxacillin ml1 significantly inhibited the transcription of msrA1 (Fig. 6, lane 3). However, if GML was added 1 h later than the oxacillin to the actively growing culture, the transcription of msrA1 was not affected (Fig. 6C), thus indicating that induction of msrA1 had already occurred, and the transcript was therefore unaffected by GML addition. Addition of GML and oxacillin at the same time also inhibited the transcription of msrA1 (Fig. 6B). Similar results were also seen in gene fusion analyses (Fig. 7). When GML was added to an actively growing culture 1 h prior to addition of 1.2 µg of oxacillin ml1, it significantly inhibited the ß-galactosidase activity (Fig. 7B). However, if GML was added 1 h later than the oxacillin (1.2 µg/ml) to the actively growing culture, the ß-galactosidase activity was almost unaffected (Fig. 7A), thus indicating that induction of msrA1 had already occurred, and the transcript was therefore unaffected by GML addition. Inhibition of msrA1 induction by GML indicates that an unidentified signal transduction pathway initiated by exposure to oxacillin was responsible for msrA1 induction.
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FIG. 6. Effect of GML on the cell wall-active antibiotic-induced expression of msrA by Northern blot analysis. RNA (10 µg) separated on a 1.2% denaturing agarose gel was analyzed with the radiolabeled msrA probe. (A) S. aureus SH1000 cultures at an OD600 of 0.3 were treated with various concentrations of GML for 1 h and then with 1.2 µg of oxacillin ml1 for 1 h. (B) Cultures were simultaneously treated with oxacillin (1.2 µg ml1) and GML (50 µg ml1) for 1 h. (C) Cultures at an OD600 of 0.3 were treated with oxacillin (1.2 µg ml1) for 1 h and then various concentrations of GML for 1 h. The GML concentrations were as follows: lane 2, 0 µg ml1; lane 3, 25 µg ml1; lane 4, 50 µg ml1; lane 5, 100 µg ml1; lane 6, 200 µg ml1; lane 7, 300 µg ml1; and lane 8, 400 µg ml1. Lane 1, not treated with oxacillin or GML.
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FIG. 7. Inhibition of the cell wall-active antibiotic-induced expression of PmsrA1::lacZ by GML. After treatment, cells were harvested, and the ß-galactosidase activity was determined. Error bars represent the standard deviations of triplicate experiments. (A) S. aureus SH1000 cultures at an OD600 of 0.3 were treated with oxacillin (1.2 µg ml1) for 1 h and then various concentrations of GML for 1 h. (B) S. aureus SH1000 cultures at an OD600 of 0.3 were treated with various concentrations of GML for 1 h and then with 1.2 µg of oxacillin ml1 for 1 h. GML concentrations were as follows: lane 2, 0 µg ml1; lane 3, 25 µg ml1; lane 4, 50 µg ml1; lane 5, 100 µg ml1; lane 6, 200 µg ml1; lane 7, 300 µg ml1; and lane 8, 400 µg ml1. Lane 1, not treated with oxacillin or GML.
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S. aureus contains three msrA genes (msrA1, msrA2, and msrA3) and msrB. msrA1 and msrA2 have been shown to have methionine reductase activity specific for the S-enantiomer of Met-O, and MsrB is specific for the R-enantiomer of Met-O (27, 46).
msrA1 is a member gene of the cell wall stress stimulon, and findings on the regulation of msrA1 probably also apply more generally to the cell wall stress stimulon. msrA1 was not induced by low concentrations of oxacillin in a homogeneous strain and in two heterogeneous MRSA strains but was induced by vancomycin or D-cycloserine, cell wall-active antibiotics that inhibit different targets in peptidoglycan biosynthesis than oxacillin does (49). Interestingly, somewhat higher concentrations of vancomycin and D-cycloserine were needed to induce msrA1 in strain COL than in methicillin-susceptible strains. The reason for this is not clear. Possibly, peptidoglycan biosynthesis is activated in MRSA, for which there is some evidence (47), as is known to be the situation in some glycopeptide-intermediate S. aureus strains (15), and higher concentrations of antibiotic are needed for inhibition. Lysostaphin and lysozyme, which degrade mature peptidoglycan, did not result in msrA1 induction. Evidence for induction of a likely cell wall stress stimulon by cell wall-active antibiotics has been provided for Bacillus subtilis (6) and Streptomyces coelicolor (19). Alland et al. (1) have reported that the Mycobacterium tuberculosis promoter iniBAC is induced by various agents that inhibit cell wall synthesis. Induction was not simply limited to inhibitors of peptidoglycan biosynthesis but included inhibitors of the biosynthesis of other wall polymers as well. iniBAC was not induced by cell wall-degrading enzymes.
Failure to induce msrA1 in both homogeneous and heterogeneous MRSA strains implies that msrA1 and the cell wall stress stimulon is not being induced by the cell wall-active antibiotic molecules per se but is being induced as a result of the inhibition of the process of peptidoglycan biosynthesis. MRSA strains continue to make peptidoglycan in the presence of ß-lactam antibiotics (47). The nature of the signal caused by inhibition of peptidoglycan biosynthesis and its sensing mechanism is unclear. A subset of the S. aureus cell wall stress stimulon genes are controlled by the two-component system VraSR (24). In gram-negative bacteria there is a clearly defined example of the regulation of chromosomal ß-lactamase by muropeptide peptidoglycan breakdown products (16).
Recently, Rossi et al. (37) reported on msrR, which is believed to belong to the LytR-CpsA-Psr family of cell envelope- related transcriptional attenuators. msrR was discovered in a transposon insertion mutant showing increased susceptibility to ß-lactam antibiotics. This gene was separated from msrA2 by 136 nucleotides, and msrR and msrA2 are transcribed divergently. msrR is clearly a member gene of the cell wall stress stimulon (24, 48). Rossi et al. (37) showed that the transcription of msrR was increased by cell wall-active antibiotics and by lysostaphin. msrR was proposed to be a sensor of cell wall damage and to influence sarA and agr transcription.
SigB mutants express less resistance to ß-lactam and glycopeptide antibiotics than SigB-intact parent strains (42, 45, 51). Oxacillin-induced msrA1 transcription was ca. 30% higher in the SigB+ derivative of strain RN450 (NCTC 8325-4), i.e., SH1000. SigB is an alternative sigma factor that is involved in various aspects of S. aureus physiology and pathogenicity (8, 12). Clearly, SigB has an enhancing effect on the expression of msrA1, and probably the entire cell wall stress stimulon as well, but is not required for induction. msrA1 induction was not markedly diminished in agr and sarA mutants, implying that these global regulator operons do not play a major role in msrA1 expression or in expression of the cell wall stress stimulon.
The oxacillin-induced expression of msrA1 was inhibited by GML. GML is a surfactant that inhibits the synthesis of many S. aureus exoproteins, including toxins, at the level of transcription (36). In Enterococcus faecalis, GML inhibits the induction of the VanS-VanR pathway necessary for vancomycin resistance (38). GML is considered to inhibit transcription at the level of signal transduction. The inhibition of msrA1 induction by GML suggests that a signal transduction pathway is involved between the inhibition of peptidoglycan biosynthesis and the expression of the cell wall stress stimulon.
The two-component system genes vraSR are member genes of the cell wall stress stimulon (24, 48; Chan et al., Abstr. 103rd Gen. Meet. Am. Soc. Microbiol.). Previously, vraSR has been shown to be upregulated in two clinical glycopeptide-intermediate S. aureus strains compared to glycopeptide-susceptible strains (23). Recently, Chan et al. (Abstr. 103rd Gen. Meet. Am. Soc. Microbiol.), Kuroda et al. (24), and Utaida et al. (48) have shown that vraSR is induced by cell wall-active antibiotics. Microarray analysis showed that vancomycin induced the transcription of 139 genes in MRSA strain N315 (24). Forty-six of these genes appeared to be under the control of vraSR because they were not induced by vancomycin in a vraSR-null mutant.
The reason for the induction of msrA1, which is part of a polycistronic message including msrB, and a gene specifying enzyme IIA of the phosphotransferase system (44), by cell wall-active antibiotic is not yet clear. Methionine sulfoxide reductases are believed to play a role in defense against oxidative stress (5) and in the maintenance of cell surface molecules in various pathogens (31, 50). In S. aureus several cell surface proteins, such as protein A, are covalently linked to cell wall peptidoglycan, and such proteins bear a C-terminal cell wall sorting signal containing an LPXTG motif (28). The peptide bond between the threonine and the glycine residues of the LPXTG motif is cleaved, and the carboxyl group of the threonine is amide linked to the amino group of the pentaglycine cross-bridge in the lipid II precursor molecule of peptidoglycan biosynthesis (34). The cell surface protein is then incorporated into the cell wall by transglycosylation and transpeptidation reactions. Inhibition of peptidoglycan biosynthesis by cell wall-active antibiotics is expected to interfere with the incorporation of cell surface proteins into the cell wall. Perhaps unincorporated cell surface proteins accumulate, and this leads to the induction of various genes encoding proteins involved in posttranslational modification, protein turnover, and chaperones such as msrA1, prsA, htrA, and htrO, which are part of the cell wall stress stimulon (48). Induction of msrA1 and msrB may be related to a disturbance in the processing and incorporation of cell surface proteins caused by cell wall-active antibiotics.
This study was supported by grants AI43970 and GM65839 from the National Institutes of Health to B.J.W. and R.K.J.
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