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Antimicrobial Agents and Chemotherapy, September 2004, p. 3390-3395, Vol. 48, No. 9
0066-4804/04/$08.00+0 DOI: 10.1128/AAC.48.9.3390-3395.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Periodontology, Section Oral Microbiology, Academic Centre for Dentistry, Amsterdam,1 Biotechnology Group, Unilever Research Vlaardingen, Vlaardingen, The Netherlands2
Received 31 October 2003/ Returned for modification 22 January 2004/ Accepted 19 May 2004
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-lactone, concomitantly producing hydrogen peroxide. Subsequently, in the presence of hydrogen peroxide, LPO delivers the antimicrobial agents by oxidation of iodide or thiocyanate. The bactericidal effect of this system has been shown in various in vitro studies that have tested oral bacteria. It has been shown that gram-positive bacteria, such as S. mutans and Streptococcus rattus, are more resistant than gram-negative bacteria, such as Actinobacillus actinomycetemcomitans, Fusobacterium nucleatum, and Porphyromonas gingivalis. Moreover, the antimicrobial effect of the peroxidase system is dependent on the amount of hydrogen peroxide and an oxidizable substrate, such as a halide (I or Cl) or a pseudohalide (SCN) (17, 18). Furthermore, many in vivo studies in which commercial products have been tested have not confirmed the antimicrobial activity of the peroxide system either in saliva (22) or in plaque (29), nor have they confirmed the activities of the system against plaque development and gingivitis (1, 10, 31). Therefore, it seems necessary to target the antimicrobials to the pathogenic bacteria not only to avoid the killing of noncariogenic bacteria but also to increase the local antimicrobial concentration. One of the potential solutions for targeting of the antimicrobials is construction of a fusion protein composed of an antimicrobial compound coupled to an antibody. Since the GOx gene from Aspergillus niger has been successfully cloned in the yeast Saccharomyces cerevisiae and the active protein has been expressed and secreted into the growth medium, the enzyme is a good candidate for the antimicrobial moiety of the hybrid molecule (11). In the proposed system, we have chosen the antigen-binding fragments of heavy-chain immunoglobulin G as the specifically binding fragments. Unlike the conventional immunoglobulins, these antibodies, which have been found only in the family Camelidae, are devoid of the light chains. The N-terminal variable domain of the heavy-chain antibodies, referred to as VHH (13), has an overall sequence and structure homologous to the variable domain (VH) of the heavy chain of a classical human antibody (5). Although the VHH domain comprises only one single-immunoglobulin domain with three antigen-binding loops, the specificity and affinity of heavy-chain antibodies are comparable to or higher than those of conventional antibodies (2, 12, 35). Furthermore, the variable-region fragments can easily be produced in large quantities by fermentation by S. cerevisiae (12).
In the present study we examined combinations of the specific antibodies and enzyme-induced killing. The gene of the single-chain antibodies of a llama immunized with S. mutans was coupled to the GOx gene of A. niger and cloned into the yeast S. cerevisiae. After expression and secretion of the fusion protein into the medium, the binding specificity of the protein was investigated, as was the ability of the protein to kill S. mutans.
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Strain JM109 was grown in 2x TY (16 g of Bacto tryptone, 10 g of yeast extract, and 5 g of NaCl per liter [pH 7]) medium supplemented with 1% glucose and 100 µg of ampicillin per ml. Oral bacteria were cultivated anaerobically in Todd-Hewitt broth at 37°C without agitation. For expression of recombinant proteins, S. cerevisiae was grown in selective minimal medium, which comprised 0.7% yeast nitrogen base without amino acids (291940; Becton Dickinson) and 2% glucose supplemented with 0.02 mg of histidine per ml, for 48 h at 30°C. Subsequently, the cultures were washed in phosphate-buffered saline (PBS) and diluted 10 times in YPGal medium, which comprised 1% yeast extract, 2% Bacto Peptone, and 5% galactose. After 48 h of growth, the cells were pelleted and the culture supernatants were split, placed into 1-ml vials, and stored at 20°C and used for the subsequent experiments.
Library construction and screening. Antibody fragments were obtained essentially as described previously (12, 35). Briefly, a young adult male llama (Lama glama) was immunized with a mixture of disrupted and intact S. mutans HG982 cells. After isolation of RNA from lymphocytes and purification of the RNA, the first cDNA was synthesized. DNA fragments encoding VHH fragments and part of the long and short hinge regions were amplified by PCR with specific primers (35). Subsequently, DNA fragments with lengths of between 300 and 450 bp were purified and ligated into the E. coli phagemid vector pUR4536 or the episomal S. cerevisiae expression vector pUR4548. pUR4536 is derived from pHEN (16) and contains the lacIq gene and unique restriction sites to allow cloning of the llama VHH genes. pUR4548 is derived from pSY1 (14). The BstEII site in the leu2 gene was removed from this plasmid by PCR, and the cloning sites between the SUC2 signal sequence and the terminator were replaced in order to facilitate the cloning of the VHH gene fragments. In order to facilitate the detection of protein expression, the nucleotide sequence encoding the myc tag (EQKLISEEDLN) was introduced before the terminator by a subsequent PCR.
On transformation, individual E. coli JM109 colonies were transferred to 96-well microtiter plates containing 150 µl of 2x TY medium supplemented with 1% glucose and 100 mg of ampicillin per liter. After growth at 37°C overnight, the plates were duplicated in 2x TY medium supplemented with 100 mg of ampicillin per liter and 0.1 mM isopropyl-ß-D-thiogalactopyranoside. After another overnight incubation, the cells were pelleted and the supernatant was used in an enzyme-linked immunosorbent assay (ELISA).
Individual S. cerevisiae colonies were transferred to test tubes containing selective minimal medium and were grown for 48 h at 30°C. Subsequently, the cultures were diluted 10 times in YPGal medium. After 24 and 48 h of growth, the cells were pelleted and the culture supernatant was analyzed by an ELISA. Supernatants from two clones (clones S36 and S120) were reactive against S. mutans HG982.
Construction of recombinant GOx specific for S. mutans. Episomal S. cerevisiae expression vectors were derived from pUR2741 (9). For the production of GOx, the GOx gene from A. niger (11) was modified. A BspHI site was introduced at the 5' end of the gene; this allowed a fusion between the GOx gene and the GAL7 promoter. At the 3' end, a MluI site was introduced just before the stop codon and a HindIII site was introduced just downstream of the stop codon. The modified GOx gene was cloned into the pSY1 derivative, resulting in pUR4504. For the production of GOx-VHH fusion proteins, the VHH genes preceded by a linker sequence (which encodes a GSSGGSS linker peptide) were introduced into pUR4504, downstream of the GOx gene. In this way pUR4572 (S36) and pUR4579 (S120) were obtained. The plasmids maps are presented in Fig. 1. Expression of GOx or the GOx-VHH fusion protein was performed essentially as described above.
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FIG. 1. Schematic representation of GOx-S36 (A) and GOx-S120 (B) expression vectors. Abbreviations: GAL7, promoter of the -D-galactose-phosphate uridyl transferase; GOx, glucose oxidase gene; S-120 and S-36, genes encoding variable domains of llama heavy-chain antibodies; 2U, 2 µm yeast replication sequence; LEU2, LEU2 gene selection marker; ORI MB1, bacterial origin of replication; AMP, ß-lactamase gene.
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Determination of c-myc tagged proteins. The presence and the amount of VHH and GOx-S120 in yeast supernatants were determined by detection of the c-myc tag. The assay was a modification of the method of de Soet et al. (7). Briefly, a culture of S. mutans HG982 was prepared by inoculating Todd-Hewitt (TH) broth. After 16 h of anaerobic growth at 37°C without agitation, the culture was washed once in PBS and was resuspended to an optical density at 600 nm (OD600) of 0.7 in coating buffer containing 18 mM Na2CO3 and 32 mM NaHCO3. The bacterial suspension was added to each well of a microtiter plate (F 655001; Greiner) and incubated at 4°C for 16 h. After blocking of the wells with 4% skim milk (L31; Oxoid) for 30 min at room temperature, the plate was incubated with a serial dilution of yeast culture supernatants containing S120 or GOx-S120 in 2% skim milk for 2 h at room temperature. Monoclonal antibodies against c-myc (3800-1; Clontech) were added after a washing step and were incubated for 2 h at room temperature. Subsequently, the monoclonal antibodies were detected with secondary antibodies conjugated to horseradish peroxidase. The substrate solution contained 125 mM phosphate-citrate buffer (pH 4.8), 0.25 mM TMB, and 0.06% H2O2. The reaction was stopped after 20 min by adding 50 µl of 1 M H2SO4. The absorbances of the TMB reaction products were determined at 450 nm.
Binding specificity. The specificities of the recombinant antibodies coupled to GOx were determined by a method similar to the one used for determination of c-myc-tagged proteins, but instead of using anti c-myc antibodies, the activity of GOx was measured as described above for the GOx assay.
Bactericidal test. Bacterial cultures were grown anaerobically in 10 ml of TH broth at 37°C overnight. After the bacteria were washed with PBS, they were resuspended in PBS until the OD600 reached 1. One-half milliliter of the bacterial suspension was mixed with 5 µl of 10% Tween 80 and 0.5 ml of a dilution of the yeast culture supernatant in PBS. The mixtures of bacteria and growth media were incubated for 1 h at room temperature with continuous shaking. After the cells were harvested, the pellet was washed once with PBS and resuspended in 0.5 ml of PBS and then 0.5 ml of a killing mixture, which was made up of 10% glucose, 2 mM KI, and 200 µg of LPO (batch 4300123; DMV International) per ml in PBS, was added. After 20 min of incubation at room temperature, the samples were serially diluted in PBS and plated onto blood agar. The plates were incubated anaerobically at 37°C for 2 days, and the colonies were counted. Survival was calculated as a percentage of the growth of each strain treated with PBS instead of the yeast supernatant.
In order to determine the influence of the S120 and GOx moieties on bacterial survival in comparison to the antimicrobial activity of fusion protein GOx-S120, bactericidal tests were performed with the different dilutions of yeast growth media but with equimolar concentrations of S120 and active GOx. The yeast growth supernatant dilutions were chosen on the basis of determination of the GOx activity and the presence of the c-myc tag.
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FIG. 2. Binding of GOx, GOx-S36, and GOx-S120 to S. mutans HG982 determined by the detection of GOx activities after incubation of bacterium-coated microtiter plates with serial dilutions of yeast growth medium containing GOx, GOx-S36, or GOx-S120.
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FIG. 3. Binding of GOx, GOx-S36, and GOx-S120 to various oral bacterial species determined by the detection of GOx activities after incubation of yeast growth medium diluted 64 times in bacterium coated microtiter plates. The bars for S. sobrinus, S. sanguinis, and S. mutans represent the averages for two S. sobrinus strains, two S. sanguinis strains, and five S. mutans strains. The other bars represent the results for one strain of each species.
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FIG. 4. Survival of S. mutans HG982 (black bars), S. gordonii HG222 (grey bars), and S. sanguinis HG1472 (white bars) after 1 h of incubation with yeast growth medium containing GOx-S120, followed by incubation with a killing mixture containing 10% glucose, 2 mM KI, and 200 µg of LPO per ml.
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FIG. 5. Survival of S. gordonii HG222 (A), S. sanguinis HG1472 (B), and S. mutans HG982 (C) after incubation with yeast supernatants containing equimolar concentrations of GOx-S120 (white bars), GOx (grey bars), and S120 (black bars), followed by incubation with the killing mixture.
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In the present study a hybrid molecule consisting of GOx and the variable domain of a llama heavy-chain antibody (VHH) was constructed. Although significant progress has been made with the production of monoclonal and recombinant immunoglobulins against S. mutans (21, 26, 27), the creation of the active fusion proteins consisting of these antibodies and an antimicrobial agent is uncertain. The antibodies are based on conventional immunoglobulins; thus, the recognition of antigen requires proper folding of variable domains of light and heavy chains (12). To avoid potential difficulties, we applied the recently developed single-chain antibody technology. In the early 1990s, the novel class of immunoglobulin G antibodies was discovered in the family Camelidae (camels and llamas) (13). Because these antibodies lack light chains, their binding domains consist only of the variable domains of the heavy chains. An additional advantage is the possibility of the production of active VHH in E. coli (2) and S. cerevisiae (12). Not only can both of these organisms be easily modified genetically, but S. cerevisiae is also generally regarded as safe. Moreover, the combined findings from immunization of the llama (L. glama) with S. mutans and the determination of two heavy-chain fractions (the long hinge and the short hinge) with activities against S. mutans (35) facilitated the acquisition of DNA fragments encoding VHH, which were subsequently cloned into E. coli and S. cerevisiae. Screening of libraries enabled the detection of two clones expressing VHH against S. mutans. The subsequent joining of VHH genes to the GOx gene of A. niger (11) resulted in the formation of two hybrid molecules, GOx-S120 and GOx-S36, which were expressed by baker's yeast and secreted into the growth medium. Usually, the C terminus of single-chain Fv fragments is connected to large foreign protein domains, since joining to the N terminus resulted in the loss of binding activity (28, 32). However, using a flexible linker, we were able to isolate active fusion proteins in which the C terminus of GOx was coupled to the N terminus of VHH. Moreover, the binding specificity assay showed that both moieties maintained their biological activities.
As we were particularly interested in the delivery of GOx to S. mutans, we tested the specificities of the fusion proteins. Most of the oral bacteria examined did not interact with any of the recombinant molecules. Only S. mutans and C. concisus were bound by GOx-S120, as well as by GOx-S36. The recognition of the S. mutans antigens by VHH was not surprising, since the llamas were immunized with these bacteria. However, the binding of C. concisus by hybrid molecules was probably due to an interaction of the GOx moiety, since GOx alone was able to bind to these bacteria. A similar phenomenon of nonspecific binding of an enzyme to bacteria was previously reported (24) for galactose oxidase and S. sanguinis. Additionally, GOx-S36 recognized S. gordonii. Since the antigens for S120 and S36 are still not known, it is difficult to assess which bacterial epitopes are responsible for this cross-reaction. However, it has been shown that cross-reactions between S. mutans and S. gordonii occur with monoclonal antibodies (23, 38), rabbit anti-SR antibodies, and sera from patients with rheumatoid arthritis (30). Therefore, we suspect that the resemblance of the antigens on the surfaces of both bacteria can be responsible for the cross-reaction in the case of GOx-S36. Since the S120 moiety was not responsible for the binding to the bacteria tested, GOx-S120 is considered more specific than GOx-S36.
Bactericidal test data showed that the killing effect of GOx-S120 is dependent on the binding of the hybrid molecule to the bacteria. S. sanguinis was not affected by GOx-LPO-I, since this species was not able to bind GOx-S120 at all. The amount of GOx-S120 required to coat S. gordonii and to finally kill the bacteria was much higher than the amount required for S. mutans. This suggests that the affinity of GOx-S120 to S. mutans is higher than that to S. gordonii. Because some antibodies have antimicrobial activities (3) and GOx alone might also contribute to bacterial death, we tested VHH and GOx separately with the MBC of GOx-S120. Neither of the molecules affected the growth of S. mutans, S. sanguinis, or S. gordonii.
So far, only a few target systems against oral bacteria have been investigated. Hill et al. (15) proposed one of them, in which GOx was encapsulated with horseradish peroxidase in liposomes. In order to target S. gordonii biofilms, Hill et al. (15) chose the optimum polyhydroxy lipid level. Although the reactive liposomes had antimicrobial effects on monoculture biofilms, it is difficult to assess whether more complex and diverse biofilms are targets for the liposomes. As another delivery system, the fusion protein composed of galactose oxidase (GAO) joined with the glucan binding domain (GBD) was suggested (24). As in our system, the bacteria were more susceptible to the hybrid molecule than to the antimicrobial agent alone. Nevertheless, all the bacteria tested were affected by GAO-GBD, and S. mutans seemed to be more resistant than S. gordonii and S. sanguinis. The application of the VHH fragment instead of the less specific GBD made it possible to kill the target bacteria by increasing the local concentration of antimicrobials: consequently, this may protect other microorganisms in the oral cavity against the activities of broad-spectrum antimicrobial agents. Of course, although we should not ignore the nonspecific binding of the hybrid molecules, the application of relatively low concentrations of the fusion protein may solve the problem.
It can be concluded that the active fusion protein composed of an antimicrobial moiety, such as GOx, and a target moiety, such as anti-S. mutans VHH antibody fragments, can be expressed and secreted into the medium by S. cerevisiae. Furthermore, the hybrid molecule specifically binds to the target bacteria and leads to a local increase in antimicrobial activity. In addition, such a construct needs to be tested with mixed biofilm cultures and in an animal model system to assess its effectiveness under more complex conditions.
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