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Antimicrobial Agents and Chemotherapy, March 2005, p. 1010-1016, Vol. 49, No. 3
0066-4804/05/$08.00+0 doi:10.1128/AAC.49.3.1010-1016.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
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Jan Balzarini,1 and
Erik De Clercq1
Rega Institute for Medical Research, Katholieke Universiteit Leuven, Leuven, Belgium,1 Division of Virology, Hôpital St.-Pierre, Université Libre de Bruxelles, Brussels, Belgium,2 Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Prague, Czech Republic3
Received 27 July 2004/ Returned for modification 16 September 2004/ Accepted 31 October 2004
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In a comparison of the available in vitro data on the activities of antiviral compounds against human adenoviruses, we were surprised by the inconsistencies in the experimental procedures used. Accurate estimation of antiviral activity obviously depends on factors, such as viral load, host cell line, and the methodology used to measure adenovirus replication. In the present study, we optimized these antiviral assays in human embryonic lung fibroblast cells. We combined indirect parameters for adenovirus replication (examining cytopathic effect and viability of infected cells) with real-time PCR analysis to directly quantify adenovirus progeny in the virus-infected cells. Using these methodologies, we now demonstrate that several nucleoside and nucleotide analogues, some of which were already known to inhibit herpesviruses and/or herpesviruses, display potent and selective antiadenovirus activity in cell culture.
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, Prague, Czech Republic. Acyclovir (Zovirax), ganciclovir (Cymevene), foscarnet (Foscavir), zalcitabine (ddC; Hivid), zidovudine (AZT; Retrovir), lamivudine (3TC; Epivir), and ribavirin (Virazole) were from commercial sources. Penciclovir and S-2242 [2-amino-7-(1,3-dihydroxy-2-propoxymethyl)purine] were from I. Winkler, Hoechst, Inc., Frankfurt am Main, Germany. Brivudin {E-5-(2-bromovinyl)-2'-deoxyuridine; BVDU; Zostex}, alovudine {3'-fluoro-3'-deoxythymidine; FddT}, and 3'-fluoro-2',3'-dideoxyuridine (FddU) were from P. Herdewijn, Leuven, Belgium. A-5021 {(1'S,2'R)-9-[1',2'-bis(hydroxymethyl)-cycloprop-1'-yl]methyl]guanine} was from Ajinomoto, Inc., Kawasaki, Japan. Chemical structures of the investigational compounds are presented in Fig. 1.
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FIG. 1. Chemical structures of the investigational antiviral compounds.
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90% cytopathic effect (CPE) was apparent, Ad2-infected A549 cells were frozen at 80°C. After cell lysis by rapid thawing and centrifugation (10 min at 1,800 x g), the clarified culture supernatant was divided in aliquots and stored at 80°C. The Ad2 stock was titrated in A549 cells and human embryonic lung (HEL) fibroblast cells (American Type Culture Collection no. CCL-137) using a standard plaque assay (25), and the virus titers were found to be 2 x 1010 PFU/ml for A549 cells and 8 x 104 PFU/ml for HEL cells. The human osteosarcoma cell line deficient for cytosolic thymidine kinase (OST TK) and a derived stable transfectant expressing herpes simplex virus type 1 thymidine kinase (OST TK/HSV-1 TK+) have been previously described (8). All cell lines were subcultivated in minimal essential medium supplemented with 200 mM L-glutamine, 0.1% sodium bicarbonate, and 10% heat-inactivated fetal calf serum (fetal calf serum was reduced to a concentration of 2% for the antiviral studies). Cultures were incubated at 37°C in a humidified and CO2-controlled incubator. Antiviral experiments in HEL cells using CPE and MTS assays or real-time PCR. HEL cells were seeded in wells of 96-well plates at 10,000 cells per well and incubated for 4 or 5 days until confluency was reached. Fifty microliters of Ad2, diluted in medium to obtain a virus input of 5 PFU per well, was added to each well. After 2 h at 37°C, virus was aspirated and replaced by serial dilutions of the test compounds (200 µl per well). Mock-treated cultures receiving only the test compounds were included in each plate. After 10 to 12 days of incubation at 37°C, microscopy was performed to score the virus-induced CPE. The cells in the plates were then subjected to the 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium (MTS)-based colorimetric assay for cell viability according to the manufacturer's instructions (Promega, Leiden, The Netherlands). The A490 values, corrected for the cytotoxicity exerted by the test compounds (as determined in mock-infected cultures), were used to calculate the percent cell viability. The 50% effective concentration (EC50) was determined by extrapolation and defined as the compound concentration that produced 50% protection against the virus.
In a separate set of plates, HEL cells were infected and treated with the compounds as described above and used to measure virus replication 10 to 12 days after Ad2 infection. After removal of the culture supernatant, cells and virus particles were lysed by the addition of 70 µl of lysis buffer (10 mM Tris-HCl [pH 7.8], 0.5% sodium dodecyl sulfate [SDS], 5 mM Na2EDTA, 80 µg of proteinase K per ml) and incubated at 50°C for 1 h and then at 65°C for 20 min to inactivate proteinase K. After clarification (23,000 x g, 10 min), cell extracts were stored at 20°C until real-time PCR was performed. Extracts were diluted 100-fold in water. Two microliters of diluted extract was added to each well on optical plates containing 23 µl of SYBR green PCR master mix (Applied Biosystems, Foster City, Calif.), and the forward and reverse primers (300 µM) were added to the wells. The primers, derived from GenBank sequences, were chosen to amplify a 137-bp fragment in the conserved adenovirus hexon DNA sequence, allowing analysis of all known adenovirus types (forward primer, 5'-CGCTGGACATGACTTTTGAG-3'; reverse primer, 5'-GAACGGTGTGCGCAGGTA-3').
Real-time PCR analysis was performed in an ABI Prism 7000 apparatus (Applied Biosystems) and consisted of 10-min activation at 95°C, followed by 40 thermal cycles, with 1 cycle consisting of 15 s at 95°C and 90 s at 60°C. A dissociation profile was taken at the end of each analysis to confirm the specificity of the PCR amplification. In each individual experiment, a standard curve (R2 >0.98 within the range of 103 to 108 copies per reaction mixture) was obtained by amplification of known amounts of a pGEM T-vector in which a 691-bp fragment of adenovirus hexon DNA was inserted using common cloning procedures. These standard curves were used to convert the cycle threshold values for the HEL extracts into the absolute number of adenovirus hexon DNA copies. The EC50was calculated by extrapolation as the compound concentration at which the number of viral DNA copies at 10 to 12 days postinfection (p.i.) was 50% compared to the value obtained for the virus control.
Cytotoxicity assays in HEL cells. The cytotoxicities of the test compounds were determined in proliferating HEL cells, seeded at 4,000 cells per well in each well of 96-well trays, and treated with serial compound dilutions for 3 days. The cells were then counted with a Coulter Counter (1). The CC50 was defined as the compound concentration that produced 50% inhibition of cell proliferation.
Antiviral assays in A549 and OST cells using Western blot analysis. One day prior to infection, cells were seeded in the wells of 12-well plates at a density of 400,000 cells per well for A549 cells and 200,000 cells per well for OST TK and OST TK/HSV-1 TK+. Ad2 was added at a high multiplicity of infection (MOI) (4 PFU/cell) and removed after 2 h of adsorption at 37°C. Medium containing serial dilutions of the test compounds was then added to the wells. After 48 h of incubation, cells were extracted with 100 µl of protein extraction buffer (20 mM Tris-HCl [pH 7.4], 0.137 M NaCl, 2 mM Na2EDTA, 1% Triton X-100, 10% glycerol, 1 mM phenylmethylsulfonyl fluoride, 0.01 mg of leupeptin per ml). Samples were clarified (10 min at 23,000 x g) and analyzed by Bradford assay. Fifteen-microgram protein samples were mixed 4:1 with loading dye containing 0.25 M dithiothreitol, and the mixture was boiled for 3 min and finally loaded on 12% Tris-glycine SDS-polyacrylamide gels. After electrophoresis and electroblotting onto Hybond-P membrane (Amersham Biosciences, Buckinghamshire, United Kingdom), membranes were blocked by 5% fat-free powdered milk in phosphate-buffered saline (PBS) containing 0.1% Tween 20 (PBS-T) for 1 h and washed twice with PBS-T for 5 min each time. After 1-h incubation with 20 ng of primary antibody (mouse monoclonal antibody directed against human adenovirus fiber protein) (Ab-4 4D2; NeoMarkers, Fremont, Calif.) per ml and two washes with PBS-T, secondary antibody (horseradish peroxidase-linked goat anti-mouse immunoglobulin polyclonal antibody [Dako, Glostrup, Denmark]) was added for 45 min. After four final washes with PBS-T, protein bands were visualized by the ECL Plus detection system (Amersham Biosciences) and exposed to X-ray film. A single band representing the 62-kDa adenovirus fiber monomer was observed.
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FIG. 2. Influence of MOI on anti-Ad2 activity in HEL cells. The EC50s (in micromolar) of cidofovir, (S)-HPMPA, and zalcitabine (ddC) at a virus input of 5, 15, or 45 PFU per well were determined by CPE or MTS assay at 7 to 12 days p.i.
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Next, we determined whether the extraction procedure by SDS-based lysis of infected cells was sufficiently reproducible. We first considered using an internal standard, such as ß-actin genomic DNA, to correct for any inconsistencies in the extraction efficiency, but we calculated that extracts from 50,000 HEL cells, after 100-fold dilution, contained a maximum of 30 genomic ß-actin DNA copies per PCR mixture, which is far below the detection limit by the SYBR green method. Therefore, we used a lysis procedure with sufficient extraction reproducibility to allow omission of an internal standard. Using the technique developed by Rasool et al. (22), we performed a triplicate extraction of Ad2-infected cells treated with different concentrations of cidofovir (Table 1). The number of adenovirus DNA copies per cell measured after 100-fold dilution and real-time PCR analysis showed good reproducibility, and an EC50of 1.58 µM for cidofovir was calculated. In the control (untreated) virus-infected cells, the number of adenovirus DNA copies measured 10 to 12 days after infection of HEL cells with 5 PFU per well was consistently 106 to 107 copies per cell.
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TABLE 1. Reproducibility of the real-time PCR method for quantitation of adenovirus DNA in HEL cellsa
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TABLE 2. Activity against Ad2 in HEL cells
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35 µM). No inhibition of adenovirus replication was observed for acyclovir, penciclovir, brivudin, and foscarnet, while the investigational compound A-5021 (14) was effective only at concentrations exceeding 250 µM (Table 2). The most active compound in this series was the N7-substituted acyclic nucleoside analogue S-2242 (EC50of
1 µM), with a selectivity higher than that of cidofovir; the selectivity index, or the ratio of CC50 to EC50, of S-2242 was >400, and the selectivity index of cidofovir was 40 (Table 2). S-2242 has previously been reported to be active against all human herpesviruses and poxviruses. Its broad-spectrum anti-DNA virus activity can be explained by its activation by cellular kinases without the involvement of virus-encoded kinases (such as are present in herpesviruses but not in adenoviruses) (20, 21). The 2',3'-dideoxynucleoside analogues zalcitabine and alovudine displayed potent and selective activity against adenovirus; their EC50s were in the same range as those obtained for cidofovir and (S)-HPMPA (0.7 to 3 µM). The marked activity of zalcitabine and alovudine and inactivity of 5'-fluoro-2',3'-dideoxyuridine, lamivudine, and zidovudine is in full agreement with other reports (19).
Finally, although ribavirin has been used for adenovirus infections in several case studies, this compound was found to be inactive in our in vitro studies, in line with antiviral results reported previously (2).
Antiadenovirus activity of ganciclovir in HSV TK-expressing cells. The relatively low activity observed for ganciclovir in Ad2-infected HEL cells may be related to insufficient activation (phosphorylation) or inadequate inhibition at the level of the adenovirus DNA polymerase. Therefore, we conducted an antiviral study using conditions where ganciclovir is phosphorylated to very high levels, i.e., in human osteosarcoma cells transfected with the herpes simplex virus-encoded thymidine kinase (OST TK/HSV TK+). The corresponding parent OST TK cell line and A549 cells were included as controls, and cidofovir, which is not dependent on HSV TK for its activation, was included as a reference compound. Because of the short life span of the osteosarcoma cells, Ad2 infection was performed at a high MOI (4 PFU per cell) to enable determination of virus replication within 48 h after infection, using a Western blot assay for adenovirus fiber protein.
As shown in Table 3 and Fig. 3, both ganciclovir and cidofovir exerted a clear inhibition of Ad2 replication in all three cell lines. For instance, no adenovirus fiber band was detected with ganciclovir at concentrations of 100 and 0.008 µM in OST TK and OST TK/HSV TK+ cells, respectively. Virus was completely inhibited in both cell lines by cidofovir at a concentration of 200 µM (Fig. 3). The extremely high efficiency of ganciclovir phosphorylation in the OST TK/HSV TK+ cells not only resulted in a 20,000-fold increase in antiviral activity but also in 5,000-fold higher cytotoxicity, thus explaining the relatively small gain in the selectivity index for the OST TK and OST TK/HSV TK+ cells (Table 3). The rather high EC50s are related to the high MOI used in these experiments; the difference in EC50s in the HEL assay (Table 2) and A549 assay (Table 3) were 5- and 10-fold for ganciclovir and cidofovir, respectively. In parallel, we also evaluated acyclovir and brivudin. Even at subtoxic concentrations, these two compounds produced no inhibition of adenovirus replication in A549, OST TK, or OST TK/HSV TK+ cells (Table 3).
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TABLE 3. Antiadenovirus activities of nucleoside analogues depending on herpesvirus thymidine kinase activation
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FIG. 3. Anti-Ad2 activities of cidofovir and ganciclovir in nontransfected or HSV-1 TK-transfected osteosarcoma cells. Western blot analysis of Ad2 fiber at 48 h after infection with 4 PFU per cell. A549 cells were included as a control. The concentrations (in micromolar) of cidofovir (CDV) and ganciclovir (GCV) are shown above the blots. Data shown are from one representative experiment. CC, uninfected cell control; VC, virus control.
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While important progress in herpesvirus therapy and prophylaxis has been made during the past 10 years, adenovirus therapy has received insufficient attention in antiviral therapy or prophylaxis programs. From a survey of published studies, we concluded that the in vitro methodologies used for antiadenovirus testing are largely inconsistent. The three antiviral assays described here, which are based on a classical CPE assay, an MTS-based cell viability staining, and direct quantitation of virus progeny by real-time PCR, yielded very similar and reproducible antiviral EC50s. The real-time PCR assay can replace more-labor-intensive techniques, such as virus yield assays. Since the EC50s of cidofovir for adenovirus (
2 µM) are in the same range as those for HCMV (23), cidofovir doses used for HCMV therapy may also be effective against adenovirus infections. The data reported here were based on experiments using a relatively low MOI with the common Ad2. We recently determined the activities of cidofovir against more than 20 adenovirus strains (either reference strains from the American Type Culture Collection or fresh clinical isolates) belonging to different subgroups (subgroup B, type 3; subgroup C, types 1, 2 and 6; and subgroup D, types 8 and 9). Cidofovir was found to be active against all serotypes studied, with EC50s ranging from 1 to 7 µM (mean, 3.5 µM) (unpublished data). These findings strongly suggest that the clinical efficacy of cidofovir is not dependent on the serotype.
We have demonstrated the marked antiadenovirus activity of the new acyclic nucleoside phosphonate analogue (S)-HPMPO-DAPy, although its activity is somewhat lower than those of cidofovir and its adenine analogue (S)-HPMPA. An intriguing finding is the inhibition of adenovirus DNA synthesis by 2',3'-dideoxynucleoside analogues, as reported for zalcitabine (ddC) more than 20 years ago (27), and further documented by Mentel et al. (19). At this time, alovudine (FddT) is in phase II trials for human immunodeficiency virus (HIV) therapy. Since zalcitabine and alovudine have EC50s for HIV that are 5- to 50-fold lower than the EC50s for adenovirus, it is unlikely that these two compounds would adequately suppress adenovirus replication at the doses commonly used for treatment of HIV infections (7). Higher drug concentrations in plasma may be difficult to achieve safely, given the dose-dependent mitochondrial toxicity of ddC and FddT. However, the biochemical basis for their antiadenovirus effect (related to inhibition of adenovirus DNA polymerase) has not been studied in sufficient detail. The triphosphates of zalcitabine and alovudine are typical chain-terminating inhibitors of HIV reverse transcriptase, but their mode of interaction with the adenovirus DNA polymerase remains to be investigated. The same holds for ganciclovir triphosphate, since our studies in HEL cells and human osteosarcoma cells transfected with HSV TK clearly show that ganciclovir is active against adenovirus. However, this activity is minimized by the lack of a virus-encoded kinase in adenovirus-infected cells. The fairly high EC50 of ganciclovir against adenovirus (35 µM) is in the range of the maximum drug concentrations in plasma obtained after intravenous administration of ganciclovir (6). This may relate to the moderate efficacy of ganciclovir in the prophylaxis of adenovirus infections (4). Another interesting implication from our studies in HSV-1 TK+ osteosarcoma cells concerns the potential usefulness of ganciclovir in the context of gene therapy using adenovirus vectors with limited replication capacity (5). The safety of these vectors could be increased considerably by the incorporation of HSV-1 TK, since accidental recombination of the vector with a latent adenovirus in the patient would result in a replication-competent adenovirus that may be controlled by low doses of ganciclovir (29).
Momentum in the design of nucleoside analogues for antiadenovirus therapy is their ability to discriminate between the adenovirus DNA polymerase and cellular DNA polymerases. This is clearly the case for the N7-substituted purine derivative S-2242, which shows potent and selective activity against adenovirus due to its high phosphorylation efficiency by cellular kinases (20, 21). Akin to the acyclic nucleoside phosphonates and the dideoxynucleoside analogues, S-2242 points to the importance of the adenovirus DNA polymerase as an attractive target for antiadenovirus drug design and development, in addition to other possible targets, such as the adenovirus adsorption process (15).
Finally, although antiadenovirus drugs are most urgently needed for the treatment of severe systemic adenovirus infections, adenovirus keratoconjunctivitis (AKC) represents another clinical manifestation for which no antiviral drugs are available at this time. In animal models for AKC, cidofovir produced strong suppression of adenovirus replication, while ganciclovir was only marginally effective (10, 26). In patients, the inflammatory character of AKC should be taken into account when designing adequate measures to control this disease (11).
In conclusion, this study points to several new and old compounds besides cidofovir, viz., (S)-HPMPA, (S)-HPMPO-DAPy, S-2242, ddC, and FddT, as potential candidates for systemic and/or topical treatment of adenovirus infections, and these compounds should be examined further in both experimentally and clinically oriented studies.
These investigations were supported in part by grants from the Fonds voor Wetenschappelijk Onderzoek (FWO grant G.0267.04) and the Belgian (Flemish Community) Geconcerteerde Onderzoeksacties (GOA grant 2000/12). Liesbeth Lenaerts is a research assistant of the Fonds voor Wetenschappelijk Onderzoek.
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, A., I. Votruba, M. Masojidkova, G. Andrei, R. Snoeck, L. Naesens, E. De Clercq, and J. Balzarini. 2002. 6-[2-(Phosphonomethoxy)alkoxy]pyrimidines with antiviral activity. J. Med. Chem. 45:1918-1929.[CrossRef][Medline]
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