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Antimicrobial Agents and Chemotherapy, May 2005, p. 1837-1843, Vol. 49, No. 5
0066-4804/05/$08.00+0     doi:10.1128/AAC.49.5.1837-1843.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.

Imidazole Antibiotics Inhibit the Nitric Oxide Dioxygenase Function of Microbial Flavohemoglobin

Ryan A. Helmick,1 Arin E. Fletcher,1 Anne M. Gardner,1 Christopher R. Gessner,1 Angela N. Hvitved,2 Michael C. Gustin,2 and Paul R. Gardner1*

Division of Critical Care Medicine, Cincinnati Children's Hospital Medical Center, and Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio 45229,1 Department of Biochemistry and Cell Biology, Rice University, Houston, Texas 772512

Received 24 July 2004/ Returned for modification 25 October 2004/ Accepted 24 January 2005


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ABSTRACT
 
Flavohemoglobins metabolize nitric oxide (NO) to nitrate and protect bacteria and fungi from NO-mediated damage, growth inhibition, and killing by NO-releasing immune cells. Antimicrobial imidazoles were tested for their ability to coordinate flavohemoglobin and inhibit its NO dioxygenase (NOD) function. Miconazole, econazole, clotrimazole, and ketoconazole inhibited the NOD activity of Escherichia coli flavohemoglobin with apparent Ki values of 80, 550, 1,300, and 5,000 nM, respectively. Saccharomyces cerevisiae, Candida albicans, and Alcaligenes eutrophus enzymes exhibited similar sensitivities to imidazoles. Imidazoles coordinated the heme iron atom, impaired ferric heme reduction, produced uncompetitive inhibition with respect to O2 and NO, and inhibited NO metabolism by yeasts and bacteria. Nevertheless, these imidazoles were not sufficiently selective to fully mimic the NO-dependent growth stasis seen with NOD-deficient mutants. The results demonstrate a mechanism for NOD inhibition by imidazoles and suggest a target for imidazole engineering.


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INTRODUCTION
 
Nitric oxide (NO) is released by macrophages and other immune cells to poison and help eliminate infectious microbes, parasites, and tumor cells (12, 27, 41). Diverse life forms protect against NO toxicity by expressing NO-metabolizing enzymes. NO dioxygenases (NODs) (EC 1.14.12.17) convert NO to NO3 (equation 1), while in some organisms NO reductases (NORs) (EC 1.7.99.7) reduce NO to N2O (equation 2) (18, 39, 64). NODs utilize O2 for NO detoxification, whereas NORs scavenge and detoxify NO under anaerobic conditions and supplement NOD under the microaerobic conditions found in infections (16-18, 20).

1

2

Genomic microarrays of Escherichia coli, Bacillus subtilis, and Pseudomonas aeruginosa reveal NOD (hmp) and NOR gene transcription prominently induced by NO in vitro (37, 38). Salmonella enterica expresses NOD (hmp) and NOR (norVW) gene transcripts at high levels in infected macrophages, indicating roles in adaptation to macrophage NO (10). In addition, DNA microarrays of immune-resistant mucoid isolates of P. aeruginosa reveal NOD (fhb) and NOR (norBC) gene transcript levels elevated >50-fold, suggesting roles in the virulence of these P. aeruginosa strains (14). Moreover, NODs have been shown to prevent NO-mediated growth inhibition of bacteria, yeasts, and fungi (4, 7, 15, 20, 25, 26, 31, 36, 46, 55), decrease the susceptibility of Salmonella to killing by macrophages (51), and modestly increase the virulence of Cryptococcus neoformans and Candida albicans in systemic infections of mice (7, 55). NODs, NORs, and other microbial defense enzymes have thus emerged as attractive targets for antibiotic development (40). Agents that selectively target microbial defenses are expected to generate antibiotic-resistant mutants at reduced frequencies given the coordinate production of myriad antimicrobial toxins including NO, H2O2, HOCl, and O2 during the innate immune response and the multiple sites for toxin actions (12, 20).

The well-characterized flavohemoglobins (flavoHbs) and single domain hemoglobins (Hbs) with their associated reductases function as NODs in a variety of human and plant pathogens, including E. coli, S. enterica serovar Typhimurium, C. albicans, C. neoformans, Klebsiella pneumonia, P. aeruginosa, Mycobacterium tuberculosis, and Erwinia chrysanthemi (7, 13, 15, 20, 45, 46, 55), and genes encoding (flavo)Hbs are found in diverse microbes. In contrast, infectious microbes express one of three different types of NORs; however, not all organisms employ NORs for NO detoxification (18, 64).

Inhibitors that target the heme prosthetic group of (flavo)Hbs are attractive candidates for antibiotic development. Imidazoles bearing bulky aromatic substituents offer potential for selective and high-affinity inhibition of NOD function by coordinating the catalytic heme iron and "fitting" within the large hydrophobic distal heme pocket (11, 20, 28, 44). Imidazole coordinates the ferric iron atom of E. coli flavoHb with an equilibrium dissociation constant (Kd) of 333 µM (28), and imidazoles with bulky aromatic N-1 substituents bind and inhibit heme enzymes with similar hydrophobic pockets such as the cytochromes P450 Cyp51 (lanosterol 14{alpha}-demethylase) and Cyp121 (2, 35, 47, 63).

We have investigated the sensitivity of microbial NODs to imidazole derivatives at the enzymatic and cellular levels and propose a mechanism for NOD inhibition based on kinetic and spectroscopic data. Imidazole inhibition of microbial NOD is suggested as a strategy for increasing the antibiotic efficacy of immune system-derived NO.


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MATERIALS AND METHODS
 
Cells and plasmids. Saccharomyces cerevisiae strain BY4742 (MAT{alpha} his3{Delta} leu2{Delta} lys2{Delta} ura3{Delta}) and its isogenic flavoHb-deficient derivative 15887 (yhb1{Delta}::KanMX) were from Research Genetics/Invitrogen. C. albicans strain RM1000 (ura3{Delta}::imm434/ura3{Delta}::imm434 his1{Delta}::hisG/his1{Delta}::hisG) was from Jesus Pla (Universidad Complutense de Madrid, Spain), and its isogenic flavoHb-deficient derivative yhb1{Delta}/yhb1{Delta} (yhb1{Delta}::HIS1/yhb1{Delta}::dp1200) was prepared as previously described (55). Staphylococcus aureus (ATCC 6538) was obtained from the American Type Culture Collection (Manassas, VA). Plasmid pEcHMP was constructed by subcloning the EcoRI-BamHI fragment of plasmid pAlterhmp (16, 25) into pUC19 (61). Plasmid pCaYHB1 was constructed by inserting PCR-cloned DNA coding the full-length C. albicans yhb1 gene into the NdeI-BamHI site of pANX. pANX is a derivative of pUC19 in which the 812-bp PvuII-SmaI promoter region of E. coli hmp has been inserted in the SmaI site of the polylinker of pUC19 in which the NdeI site has been removed. Insertion at the NdeI site of the hmp promoter creates a start methionine. All constructs were sequence verified.

Reagents. Bovine liver catalase (65,000 U/mg) and NADH were obtained from Roche Molecular Biochemicals (Indianapolis, IN). Hemin was obtained from Fluka (Basel, Switzerland). Samples of the Alcaligenes eutrophus (also known as Ralstonia eutropha) and S. cerevisiae flavoHbs were provided by Hao Zhu and Austen Riggs (University of Texas, Austin) (24). Gas cylinders, containing 1,200 ppm NO in ultrapure N2, 99.993% O2, 1.5% O2 in ultrapure N2, 99.998% N2, and 99.999% argon, were obtained from Praxair (Bethlehem, PA). Miconazole (nitrate salt), econazole (nitrate salt), clotrimazole, ketoconazole, itraconazole, and all other reagents were purchased from Sigma-Aldrich Fine Chemicals (St. Louis, MO) unless otherwise indicated.

FlavoHb isolation and characterization. E. coli and C. albicans flavoHbs were expressed and purified from flavoHb-deficient E. coli AG103 cells (16), bearing the high-copy plasmids pEcHMP and pCaYHb1 and grown overnight in a nutrient-rich medium containing 89 mM potassium phosphate (pH 7.4), 24 g/liter Bacto yeast extract (Becton Dickinson, catalog no. 212750), 8 g/liter Bacto tryptone (Becton Dickinson, catalog no. 211705), 5 g/liter glycerol, 10 mM sodium nitrate, 260 U/ml catalase, 0.2 µM hemin, and 150 µg/ml ampicillin. Cultures were grown in 1-liter flasks at a culture-headspace volume ratio of 9:1 and were agitated in a gyrorotary shaker at 100 rpm. Cells were harvested, and flavoHbs were isolated as previously described (19). FlavoHbs were partly deficient in heme and FAD (flavin adenine dinucleotide) and were reconstituted by slowly adding a slight excess of hemin relative to heme-deficient sites (≤0.5 mM) in the presence of 10 mM dithiothreitol, 1 mM EDTA, and 2,000 U/ml catalase in 1.5 ml of 50 mM Tris-Cl buffer, pH 8.0, adding ~1 mg dithionite, and incubating at 37°C for 60 min. Reductants and free hemin were removed by gel filtration on a Superdex 75 column in N2-scrubbed elution buffer containing 50 mM Tris-Cl, pH 8.0, 1 mM EDTA, and 32 U/ml catalase. Reconstituted E. coli and C. albicans flavoHbs contained 69 and 85% heme, respectively. FlavoHbs were reconstituted with FAD by adding stoichiometric amounts of FAD.

Heme and FAD were assayed as previously described (19), and protein was assayed using the Lowry method (32) with bovine serum albumin (fraction V) as the standard using a 280-nm absorbance value of 0.627 for 1 mg/ml (43). FlavoHb purity was estimated to be >95% by sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

NOD activity assays. NOD activity was assayed amperometrically in 100 mM sodium phosphate buffer, pH 7.0, containing 0.3 mM EDTA, 100 µM NADH, and 1 µM FAD at 37°C, and NO and O2 concentrations were varied as previously described (19, 23). Inhibition by imidazoles was measured at 200 µM O2 and 1 µM NO unless otherwise indicated. Specific activities of the E. coli, A. eutrophus, S. cerevisiae, and C. albicans flavoHbs at 200 µM O2 and 1 µM NO were 185, 90, 105, and 17 NO heme–1 s–1, respectively. NO metabolism by cells was measured at 37°C in phosphate-buffered medium containing glucose and inhibitors of protein synthesis (18, 23, 55).

Spectral analysis. FlavoHbs were scanned at 20°C in anaerobic 100 mM sodium phosphate, pH 7.0, buffer containing 0.3 mM EDTA in rubber septum-sealed quartz cuvettes scrubbed with argon to remove O2. Residual O2 was removed by adding 8 U/ml glucose oxidase, 5 mM glucose, and 260 U/ml catalase to buffers. All other experimental details are provided in the figure legends.

Culture growth and NO exposures. E. coli AG103 pEcHMP was grown as described above to an A550 of 2.0, and cells were harvested as previously described (22). S. cerevisiae was grown at 30°C with aeration in yeast peptone dextrose (YPD) medium containing 10 g/liter Bacto yeast extract (Becton Dickinson, catalog no. 212750), 20 g/liter Bacto peptone (Becton Dickinson, catalog no. 211677), and 20 g/liter glucose (55). S. cerevisiae was grown to early log phase (A600 = 0.6), harvested, and assayed for NO metabolism. C. albicans strain RM1000 was grown at 37°C in YPD medium supplemented with 50 mg/liter uridine, 20 mg/liter adenine, 100 mg/liter leucine, and 20 mg/liter tryptophan to ensure maximal growth and NOD activity induction. At an A600 of 0.25, RM1000 cultures were exposed to 960 ppm NO in an atmosphere containing 21% O2 for 60 min (55). S. aureus cultures were grown at 37°C with aeration in phosphate-buffered Luria broth (22) to an A550 of 0.05 and exposed to 960 ppm NO in an atmosphere containing 21% O2 for 120 min. Cultures were quickly chilled on ice to inhibit growth and protein synthesis, harvested, washed, and assayed for NO metabolism (22).

For growth and viability experiments, S. cerevisiae strains were grown at 30°C in YPD medium under an atmosphere containing 21% O2 balanced with N2 (220 µM O2 in solution). S. cerevisiae cultures were initiated from overnight cultures with an initial A600 of 0.06. Dimethyl sulfoxide (DMSO) was added at 0.01% (vol/vol) as the solvent for miconazole. C. albicans strains were grown at 37°C in a modified YPD medium containing 5 mM glucose under an atmosphere containing 1.05% O2 balanced with N2 (10 µM O2 in solution) to better mimic the physiological conditions of tissue infections. Cultures were initiated from overnight cultures with an initial A600 of 0.04. After 30 min of initial growth, cultures were exposed to 160 ppm NO with or without 5 µM econazole. DMSO was added to 0.01% (vol/vol) as the solvent for econazole. Cell density was measured by plating, colony counting, and optical density measurements (21, 55).


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RESULTS
 
Imidazoles inhibit microbial NODs. Antimicrobial imidazoles were tested for their ability to inhibit the NOD activity of purified flavoHbs. As shown for the E. coli NOD activity (Fig. 1), a linear relationship is observed for 1/v versus [imidazole], suggesting a reversible mechanism involving imidazole binding. Miconazole, econazole, clotrimazole, and ketoconazole inhibited E. coli NOD with apparent Ki values of 80, 550, 1,300, and 5,000 nM, respectively. A. eutrophus, S. cerevisiae, and C. albicans NOD activities showed similar inhibition kinetics with the exception of the A. eutrophus enzyme, which showed biphasic inhibition (data not shown). Biphasic inhibition may be due to partial retention of lipids in the hydrophobic distal heme pocket (44) or the existence of multiple conformational states. Apparent Ki values for the bacterial and S. cerevisiae enzymes reveal an order of potency: miconazole > econazole > clotrimazole > ketoconazole (Table 1). For the C. albicans enzyme, econazole was ~3-fold more effective than miconazole.



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FIG. 1. Inhibition of E. coli NOD activity by imidazoles. NOD activity of E. coli flavoHb was assayed at the indicated concentrations of miconazole (line 1), econazole (line 2), clotrimazole (line 3), or ketoconazole (line 4). DMSO (lines 1-3) and methanol (line 4) were present at a final concentration of 0.1% (vol/vol).


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TABLE 1. Inhibition of the NOD activity of flavoHbs by imidazoles

In comparison, the potent lanosterol 14{alpha}-demethylase inhibitor and antifungal agent itraconazole (6, 58), bearing a triazole and bulky substituent more similar in structure to that of ketoconazole than the other imidazoles (structures reviewed in reference 58), showed a weaker inhibition more similar to that of ketoconazole. At 2 µM, itraconazole inhibited C. albicans and E. coli NOD activities by 6% and 27%, respectively.

Inhibition by miconazole was uncompetitive with respect to O2 and NO, as demonstrated by the parallel lines produced for 1/v versus 1/[O2] (Fig. 2A) and 1/v versus 1/[NO] (Fig. 2B) with various concentrations of miconazole. It should be noted that high [NO] inhibited the enzyme by competing with O2 for ferrous heme (19, 24) and that NO inhibition was augmented by miconazole (Fig. 2B).



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FIG. 2. NOD activity of E. coli flavoHb with various miconazole, O2, and NO concentrations. NOD activity was assayed with various concentrations of O2 and 0.75 µM NO (A) or with various concentrations of NO and 200 µM O2 (B) in the presence of 0 µM (•), 0.1 µM ({blacksquare}), 0.25 µM ({circ}), or 0.5 µM ({square}) miconazole. DMSO was present at a final concentration of 0.1% (vol/vol).

Imidazoles bind oxidized and reduced flavoHb. Imidazoles were examined spectroscopically for their ability to coordinate the iron atom in E. coli flavoHb. Miconazole caused a 10-nm red shift of the Soret band (Table 2) and appearance of a strong ß-band absorbance at 537 nm with a weak shoulder at 570 nm (data not shown), indicating imidazole nitrogen coordination to produce a hexacoordinate low-spin heme iron. Miconazole also coordinated ferrous heme iron as revealed by a 6-nm blue shift and enhancement of the Soret band and by the appearance of distinct ß and {alpha} bands at 530 and 560 nm, respectively. Econazole, clotrimazole, and ketoconazole produced similar spectral changes (Table 2), indicating limited interference of N-1 substituents with heme iron coordination. Only minor differences in {alpha}- and ß-band maxima of the ferrous complexes were observed with ketoconazole showing the largest effects.


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TABLE 2. Absorption maxima and extinction coefficients of E. coli flavoHb-imidazole complexes

Miconazole showed rapid, and near stoichiometric, coordination to flavoHb-Fe(III) (Fig. 3A). In contrast, miconazole associated weakly with the NADH-reduced ferrous form as evidenced by relatively slow coordination (data not shown) and substoichiometric formation of the Fe(II)-miconazole complex (Fig. 3B).



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FIG. 3. Titration of oxidized and reduced flavoHb with miconazole. (A) Miconazole was added to E. coli flavoHb-Fe(III) (4.0 µM heme), and coordination was followed by measuring the absorbance differences for the maximum (417 nm) and minimum (382 nm) of difference spectra of the miconazole complex and free enzyme. (B) Miconazole was added to NADH-reduced flavoHb-Fe(II) (4.0 µM heme) under anaerobic conditions. Samples were incubated for 5 min to allow coordination, difference spectra were recorded, and the absorbance difference for the peak (412 nm) and trough (437 nm) were measured.

Imidazole binding impedes NADH-mediated reduction of heme and FAD. NOD function requires reduction of the ferric heme in the globin domain of flavoHb via an electron shuttle from free NADH to bound FAD to the heme (19, 20). Coordination of miconazole to the ferric heme iron inhibited heme and FAD reduction as evidenced by the slower rate of transition from the ferric to ferrous state with miconazole coordination (Fig. 4, compare panel B with panel A). A marked decrease in the rate of red shift and hypochromicity of the Soret band was observed during reduction of the ferric-miconazole complex when compared to that of the ferric enzyme (Fig. 4C, compare lines 1 and 2). The estimated first-order rate constant for ferric heme reduction by NADH (kET) decreased from ~150 s–1 for the miconazole-free reaction (19) to <0.004 s–1 for the miconazole complex. Coordination of miconazole to the heme iron also decreased the rate of FAD reduction as measured by the change in absorbance at 460 nm (Fig. 4D). The lower rate of FAD reduction may be explained by an allosteric effect of imidazole binding in the distal pocket on the NADH-FAD electron transfer reaction and a lower rate constant for hydride transfer (k'H). Similar effects on heme and FAD reduction were observed with econazole, clotrimazole, and ketoconazole (data not shown).



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FIG. 4. NADH reduction of the flavoHb-Fe(III)-miconazole complex. (A) Spectra of E. coli flavoHb (6.0 µM heme) were recorded at 1-min intervals following addition of 1 mM NADH. (B) As for panel A, except miconazole (13 µM) was added prior to the addition of NADH. Arrows indicate the direction of the absorbance change. (C) Time course for NADH-mediated reduction of flavoHb-Fe(III) (line 1) and flavoHb-Fe(III)-miconazole complex (line 2) as measured by the absorbance changes at 433 nm and 427 nm, respectively. (D) Time course for reduction of FAD in flavoHb-FAD/Fe(III) (line 1) and flavoHb-FAD/Fe(III)-miconazole (line 2) measured at 460 nm. DMSO was present at a final concentration of 1.3% (vol/vol).

Imidazoles inhibit NO metabolism in microbes. In S. cerevisiae, C. albicans, and E. coli, >95% of the aerobic NO metabolic activity is catalyzed by the flavoHbs (25, 55). Imidazoles were investigated for their ability to inhibit NO metabolism by intact cells. In S. cerevisiae, miconazole showed 50% inhibition of NO metabolism at 10 µM (Fig. 5A). Inhibition was rapid and progressive (Fig. 5B), suggesting efficient uptake and accumulation within cells. Similar effects of miconazole were observed in C. albicans. Treatment of Candida with 0.5, 1, 2, 5, and 10 µM miconazole inhibited the inducible NOD activity (YHB1) (55) by 33, 51, 55, 68, and 84%, respectively. The greater sensitivity of the C. albicans NOD activity correlated with the lower Ki value determined for the purified enzyme (Table 1).



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FIG. 5. Effect of miconazole on NO metabolism in S. cerevisiae. (A) NO consumption by S. cerevisiae was assayed with various concentrations of miconazole. (B) Time dependence of activity loss in the presence of 0, 2, 5, 10, or 50 µM miconazole as indicated (lines 1-5). DMSO was added as the solvent to a final concentration of 0.1% (vol/vol). Error bars represent standard deviations of the average for three independent trials.

Although the purified E. coli NOD activity was more sensitive to miconazole (Ki = 80 nM) than either the C. albicans or S. cerevisiae enzymes, NO consumption by E. coli was only modestly inhibited by miconazole and other imidazoles. E. coli expressing a level of NOD activity of 116 ± 12 nmol NO/min/108 cells was inhibited by 34 ± 5, 41 ± 3, and 24 ± 3% following incubation with 50 µM miconazole, econazole, and clotrimazole, respectively. The results are consistent with the poor membrane permeability and antibiotic activity of imidazoles toward gram-negative E. coli (3, 48). By comparison, NO metabolism in gram-positive S. aureus was more sensitive to imidazole inhibition. S. aureus expressing a basal NOD activity of 2.6 ± 0.6 (n = 3) nmol NO/min/108 cells and an induced level of activity of 6.5 ± 0.2 nmol NO/min/108 cells (n = 3) following a 120-min exposure to 960 ppm NO was rapidly inhibited by imidazoles. Miconazole, econazole, or clotrimazole (5 µM) inhibited the induced NO metabolic activity by 92% ± 3%, 68% ± 3%, and 41% ± 3%, respectively.

Effects of NO and imidazoles on S. cerevisiae and C. albicans growth. We tested the sensitivity of S. cerevisiae to miconazole with and without exposure to NO during aerobic growth in nutrient-rich YPD medium. As shown in Fig. 6A, 5 µM miconazole caused modest growth inhibition under these conditions (compare lines 1 and 3) while 960 ppm NO (≤2 µM in solution) showed negligible effects on growth (compare lines 1 and 2). However, simultaneous exposure of yeasts to miconazole and NO strongly inhibited growth (line 4). The doubling time increased from 180 min for miconazole treatment alone to ~720 min for miconazole and NO. By comparison, the doubling time increased from 90 to ~300 min following exposure of the NOD-deficient mutant (yhb1{Delta}) to NO (compare lines 5 and 6), revealing the potential contribution of NOD inhibition to growth stasis. Together, the results in Fig. 5 and 6A support an antibiotic mechanism for miconazole involving NOD inhibition. Nevertheless, at these relatively high miconazole concentrations, the increased NO sensitivity of S. cerevisiae could also be due in part to miconazole impairment of membrane synthesis, membrane integrity, and other cell functions (1, 30, 53, 58).



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FIG. 6. Effect of NO and imidazoles on S. cerevisiae and C. albicans growth. (A) Cultures of S. cerevisiae strain BY4742 (lines 1-4) and the isogenic NOD-deficient mutant yhb1{Delta} (lines 5 and 6) were grown under a normoxic atmosphere in the absence (lines 1, 3, and 5) or presence of 960 ppm NO gas (lines 2, 4, and 6). Miconazole (lines 3 and 4) (5 µM) and NO were delivered at the time indicated by the arrow. Approximate generation times (minutes) are given in italics. (B) Cultures of C. albicans strain RM1000 and the isogenic NOD-deficient mutant yhb1{Delta}/yhb1{Delta} ({Delta}YHB1) were grown in modified YPD medium containing 5 mM glucose and 10 µM O2. Cultures were exposed to 160 ppm NO (<0.3 µM in solution) with or without 5 µM econazole. After 20 h, growth was measured by the absorbance at 600 nm. Single asterisks indicate a P of <0.05 relative to the control condition. Double asterisks indicate a P of <0.05 relative to both the control condition and between strains.

Under conditions mimicking microaerobic C. albicans infection, 160 ppm NO gas exposure (<0.3 µM in solution) also showed strong inhibition of the growth of the NOD-deficient C. albicans mutant ({Delta}YHB1) but not the isogenic parental strain RM1000 (Fig. 6B, compare open and solid bars). Unlike the effect of miconazole on the NO sensitivity of S. cerevisiae, econazole (5 µM) did not increase the sensitivity of strain RM1000 to NO. The results suggest that econazole accumulates in C. albicans at levels that are too low to effectively inhibit NOD (Ki = 225 nM) but at concentrations sufficient to inhibit the sensitive lanosterol 14{alpha}-demethylase (58).


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DISCUSSION
 
Mechanism of NOD inhibition. FlavoHb-type NODs possess remarkably large hydrophobic heme pockets capable of sequestering bulky aliphatic lipids (28, 44) and imidazole N-1 substituents. Indeed, the ability of large hydrophobic imidazoles (58) to inhibit NODs correlates remarkably well with the affinity of heme pockets for lipids: A. eutrophus > E. coli > S. cerevisiae (Table 1) (44). Furthermore, the ability of a single chlorine atom of miconazole to confer a 2.5- to 20-fold decrease in the Ki value from that for econazole suggests specific interactions with the large hydrophobic N-1 substituent affecting the geometric orientation and subsequent coordination to heme iron. An exception is the C. albicans NOD, which exhibits an ~3-fold greater sensitivity to econazole than to miconazole (Table 1). The lower sensitivity of the S. cerevisiae NOD to imidazoles in general suggests weaker interactions between the N-1 substituents and the distal hydrophobic pocket. Alternatively, certain flavoHb structures may control entry of N-1-substituted imidazoles into the heme pocket, as suggested by structural studies of the M. tuberculosis 14{alpha}-sterol demethylase (product of CYP51) (47). Our kinetic and spectral results suggest a mechanism for NOD inhibition involving high affinity binding of imidazoles to the flavoHb-Fe(III) intermediate (Fig. 7) (20). Thus, uncompetitive inhibition by imidazoles, with respect to O2 (Fig. 2A), reveals a mechanism of inhibition largely independent of O2 and flavoHb-Fe(II). In contrast, CO competitively inhibits NOD with respect to O2 by forming a high-affinity flavoHb-Fe(II) CO complex (24). The failure of imidazoles to compete with NO (Fig. 2B) also rules out mechanisms involving interference with the NO dioxygenation reaction (Fig. 7, reaction steps 4a and 4b). Furthermore, increased inhibition by NO in the presence of miconazole (Fig. 2B) suggests a secondary mechanism involving increased accessibility of NO for flavoHb-Fe(II) (19). The apparent Ki values for imidazoles (Table 1) presumably reflect composite equilibrium dissociation constants with the affinity of imidazoles for flavoHb-Fe(III) being far greater than for flavoHb-Fe(II) (Fig. 7). Together, the results support a mechanism in which imidazole binding to the flavoHb-Fe(III) intermediate impairs the reduction of heme and FAD (Fig. 7, reaction steps 1, 2a, and 2b), thus limiting subsequent steps in NOD turnover. Figure 7 also predicts greater imidazole inhibition with decreased NADH availability or poor reductase coupling as reflected by a lower kET. It is noteworthy that imidazoles also show preference for ferric heme iron in lanosterol 14{alpha}-demethylase (63), suggesting similar mechanisms for inhibition.



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FIG. 7. Proposed mechanism for imidazole inhibition of NOD. Azoles coordinate the ferric heme iron and impair hydride transfer (k'H) (step 1) and electron transfer (kET) (steps 2a and 2b). Azoles readily dissociate from the reduced ferrous heme iron, allowing O2 binding and formation of Fe(III)-O2 · (steps 3a and 3b). Rapid reaction of · NO with the Fe(III)-O2 · intermediate forms the ferric-peroxynitrite intermediate (4a and 4b), which rapidly isomerizes to produce nitrate and flavoHb-Fe(III) (5a and 5b).

Antibiotic action of imidazoles and NOD inhibition. Imidazoles and triazoles inhibit the heme-dependent lanosterol 14{alpha}-demethylase at low nanomolar concentrations and alter sterol synthesis and membrane biogenesis and stability in yeasts and fungi. Lanosterol 14{alpha}-demethylase inhibition is responsible for the antibiotic activity of these agents towards a variety of pathogenic yeast and fungi (33, 42, 57, 58, 62, 63). Azoles are widely used for treating various mycoses of skin, mucosa, and subcutaneous tissue. Ketoconazole, and more commonly itraconazole, and other potent triazole-based inhibitors of the lanosterol 14{alpha}-demethylase are administered for systemic fungal infections (5, 29, 42, 48, 52, 54, 58). In addition, antifungal imidazoles show antibacterial activity (5, 48, 49, 52, 56, 59), yet the antibiotic mechanisms remain to be fully elucidated.

Our results demonstrate that the NOD function of yeast, fungal, and bacterial flavoHbs can also be inhibited by antifungal imidazoles, albeit at greater than 100-fold higher concentrations than reported for the fungal and yeast lanosterol 14{alpha}-demethylase (33, 57, 58). Imidazoles coordinated heme and inhibited NOD activity of the purified bacterial, yeast, and fungal flavoHbs (Table 1). Imidazoles also inhibited NOD activities in S. cerevisiae (Fig. 5), C. albicans, and S. aureus and to a much lesser extent within E. coli. Moreover, miconazole increased NO-mediated growth inhibition of S. cerevisiae (Fig. 6A). On the other hand, the results do not exclude a mechanism involving NO sensitization due to lanosterol 14{alpha}-demethylase inhibition as previously suggested for clotrimazole sensitization of C. albicans to hydrogen peroxide (50) or the direct inhibition of membrane-bound ATPases and cytochrome oxidase, as well as the synthesis of mitochondrial and peroxisomal enzymes including peroxidase and catalase (8, 9, 30). Indeed, antibiotic synergy between imidazoles and NO-releasing diazeniumdiolates was previously reported for Candida (34) and may also be explained by NOD-independent mechanisms since the agents inhibited NOD weakly. Furthermore, the expression of inducible pumps for imidazole removal (58, 60) coupled with relatively high Ki values (Table 1) may preclude econazole and other imidazoles from effectively inhibiting NOD activity in C. albicans and other organisms.

Nevertheless, the potency of NO as an antibiotic in the absence of NOD (Fig. 6) (20) and the sensitivity of NODs to imidazoles (Table 1) encourage the search for imidazoles that more effectively inhibit NOD function. Knowledge of flavoHb-Fe(III)-imidazole structures and the availability of a rich pharmacopoeia of imidazoles and triazoles for testing should facilitate the identification and design of more efficacious NOD inhibitors. The unique sensitivity of the bacterial NODs to miconazole also motivates investigations of synergy between NO, miconazole, and antibacterial agents such as polymyxin B that can increase the penetration of miconazole through E. coli membranes (3).


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ACKNOWLEDGMENTS
 
We thank John Olson and Melanie Cushion for comments and discussion.

This work was supported in part by a Public Health Service Grant (R01 GM65090) from the Institute of General Medical Sciences to P.R.G. and a National Science Foundation Grant (MCB 0091236) to M.C.G. R.A.H. was supported by an Underrepresented Minority Training Supplement to R01 GM65090. A.N.H. was supported by a Public Health Service Training Grant (T32 GM008280) to the Houston Area Molecular Biophysics Program from the Institute of General Medical Sciences.


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FOOTNOTES
 
* Corresponding author. Mailing address: Division of Critical Care Medicine, MLC7006, Children's Hospital Medical Center, 3333 Burnet Ave., Cincinnati, Ohio 45229. Phone: (513) 636-4885. Fax: (513) 636-4892. E-mail: paul.gardner{at}cchmc.org. Back


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Antimicrobial Agents and Chemotherapy, May 2005, p. 1837-1843, Vol. 49, No. 5
0066-4804/05/$08.00+0     doi:10.1128/AAC.49.5.1837-1843.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.





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