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Antimicrobial Agents and Chemotherapy, May 2005, p. 1988-1993, Vol. 49, No. 5
0066-4804/05/$08.00+0 doi:10.1128/AAC.49.5.1988-1993.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Role of the ABC Transporter MRPA (PGPA) in Antimony Resistance in Leishmania infantum Axenic and Intracellular Amastigotes
Karima El Fadili,1
Nadine Messier,1
Philippe Leprohon,1
Gaétan Roy,1
Chantal Guimond,1
Nathalie Trudel,1
Nancy G. Saravia,2
Barbara Papadopoulou,1
Danielle Légaré,1 and
Marc Ouellette1*
Centre de Recherche en Infectiologie du Centre de Recherche du CHUL and Division de Microbiologie, Faculté de Médecine, Université Laval, Québec, Canada,1
Centro Internacional de Entrenamiento e Investigaciones Medicas, Cali, Colombia2
Received 29 October 2004/
Returned for modification 14 December 2004/
Accepted 18 January 2005

ABSTRACT
Antimonial compounds are the mainstay for the treatment of infections
with the protozoan parasite
Leishmania. We present our studies
on
Leishmania infantum amastigote parasites selected for resistance
to potassium antimonyl tartrate [Sb(III)]. Inside macrophages,
the Sb(III)-selected cells are cross-resistant to sodium stibogluconate
(Pentostam), the main drug used against
Leishmania. Putative
alterations in the level of expression of more than 40 genes
were compared between susceptible and resistant axenic amastigotes
using customized DNA microarrays. The expression of three genes
coding for the ABC transporter MRPA (PGPA),
S-adenosylhomocysteine
hydrolase, and folylpolyglutamate synthase was found to be consistently
increased. The levels of cysteine were found to be increased
in the mutant. Transfection of the
MRPA gene was shown to confer
sodium stibogluconate resistance in intracellular parasites.
This MRPA-mediated resistance could be reverted by using the
glutathione biosynthesis-specific inhibitor buthionine sulfoximine.
These results highlight for the first time the role of MRPA
in antimony resistance in the amastigote stage of the parasite
and suggest a strategy for reversing resistance.

INTRODUCTION
Leishmania is a protozoan parasite affecting several million
people throughout the world. The clinical manifestations of
the infection depend on the species, the most life-threatening
being visceral leishmaniasis caused by the
Leishmania donovani complex. Treatment relies exclusively on chemotherapy, and pentavalent
antimonials [Sb(V)] are still the mainstay against all forms
of
Leishmania infections (
14,
18). While Sb(V) is used for treating
patients, it is generally agreed that Sb(V) is reduced to trivalent
antimony [Sb(III)], which constitutes the active form of the
drug against the parasite. The exact site of drug reduction
(inside the macrophages or inside the parasites) is not known,
but activities were recently discovered in
Leishmania that could
be implicated in this reduction process (
7,
26,
29,
36). Resistance
to Sb(V) is so widespread in part of India (
33) that first-line
treatment in this region is either based on miltefosine (
31)
or amphotericin B (
32). Miltefosine is interesting because it
can be taken orally, but single point mutations can lead to
resistance (
24), suggesting that resistance to this drug may
occur rapidly.
Leishmania has a relatively simple life cycle with two main stages, the flagellated promastigote in the insect stage and the intracellular amastigote living inside macrophages. Progress in culture techniques has allowed the growth of Leishmania amastigotes as part of axenic cultures. An increase in the temperature from 25°C to 37°C and a decrease in the pH of the culture medium to mimic the conditions encountered in the phagolysosome are the key parameters to transform promastigotes into amastigotes (reviewed in reference 37). It is nonetheless easier to grow promastigotes, and most of the work pertaining to resistance mechanisms to antimonials was performed in the insect stage of the parasite. One resistance mechanism deduced from in vitro work involves multiple steps where antimony is conjugated to the parasite-specific glutathione-spermidine conjugate trypanothione (11). Trypanothione is thought to bind to metals in susceptible isolates (35) and is increased in Sb(III)-resistant cells (16). Metal-trypanothione conjugates are either sequestered into an intracellular organelle by the ABC transporter MRPA (formerly known as PGPA) (20) or extruded outside the cell by an efflux pump (8). It remains to be seen whether similar resistance mechanisms operate in the amastigote stage of the parasite and also in field isolates. Resistance in field isolates is less well defined, and it is only recently that susceptibility values determined using in vitro assays were found to correlate with the clinical response (21). Resistance in field isolates may involve amplification of genes (30). Resistance mechanisms in amastigotes have only recently been studied, and one resistance mechanism involves reduced accumulation of the drug (4). One possible route of entry of the drug is a parasite aquaglyceroporin (12). Another study has revealed a decrease in the conversion of Sb(V) to Sb(III) (29).
To further define the molecular mechanisms of resistance to antimonials in Leishmania amastigotes, we used customized DNA microarrays to screen for differentially expressed genes in an L. infantum axenic amastigote cell line selected for Sb(III) resistance. Our analysis indicates that the ABC transporter MRPA can confer resistance to antimony in intracellular amastigote parasites.

MATERIALS AND METHODS
Cell lines.
Wild-type clones of
L. infantum (MHOM/MA/67/ITMAP-263) and
Leishmania viannia panamensis strain MHOM/CO/86/1166 have been described
previously (
4,
28). Axenically grown amastigotes of
L. infantum were maintained at 37°C with 5% CO
2 by weekly subpassages
in MAA/20 (medium for axenically grown amastigotes) at pH 5.8
in 25-cm
2 flasks (
27). The promastigote forms of
L. infantum or
L. panamensis were grown in the same medium at pH 7.0 at
25°C. Growth curves of control strains and transfectants
in the presence of drugs were obtained by measuring absorbance
at 600 nm using an automated microplate reader (Organon Teknica
microwell system). An axenic
L. infantum cell line was selected
for Sb(III) resistance (potassium antimonyl tartrate hydrate;
Aldrich Chemical) by step-wise selection starting with a drug
concentration corresponding to the 50% effective concentration
(EC
50) of the strain until we obtained the mutant
L. infantum Sb2000.1, which was resistant to 2,000 µM. Note that the
EC
50 of susceptible axenic amastigotes varies from 2 to 20 µM,
and this may depend on a number of factors. Nonetheless, the
mutants are considerably more resistant than the sensitive isolates.
This mutant was grown in the absence of drugs for 20 passages
to obtain a (partial) revertant line.
DNA microarray procedures.
We have recently described customized DNA microarrays for studying drug resistance in Leishmania (15). These arrays contain several genes implicated in drug resistance, including genes involved in cysteine, trypanothione, and folate metabolism and transport. These arrays were used to study gene expression in L. infantum Sb2000.1. RNA was isolated from mid-log-phase parasites with the TRIzol reagent (Invitrogen). The RNA was treated with DNase I (Ambion) and purified using the RNeasy kit (QIAGEN). RNA was converted to fluorescent cDNA probes by direct incorporation of Cy3/Cy5-linked dUTP (Amersham Pharmacia) mediated by the Superscript II reverse transcriptase (Invitrogen) according to the supplier's recommendations. For each labeling reaction mixture, 15 µg of purified RNA was spiked with two exogenous RNAs (CAB1 at 2 pg/µl and NAC1 at 5 pg/µl from Arabidopsis thaliana; Stratagene) to adjust for variations in the incorporation efficiency of the dyes and for differences in first-strand cDNA synthesis reactions. Aliquots of cDNA containing 20 pmol of incorporated dye were lyophilized and stored at 80°C until use. The hybridization, washes, data, and statistical analyses were done essentially as described previously using the QuantArray software (15). Statistical significance was calculated by Student's t test, using the StatView software. A cutoff of 2 for significant differences was chosen.
DNA constructs and transfections.
MRPA constructs cloned into Leishmania expression vectors were described previously (20, 23). Briefly, the green fluorescent protein (GFP) was cloned in frame with MRPA, and this construct was subcloned into the Leishmania expression vector pSPY-NEO (20). These constructs were electroporated in L. infantum axenic amastigote cells and L. panamensis promastigotes as described elsewhere (28). The vector pSP1.2 LUC
HYG
(34) was also cotransfected in MRPA-transfected cells to facilitate the quantification of intracellular parasites.
Drug efficacy assay in THP-1 differentiated monocytes.
The growth of the luciferase-expressing amastigotes of L. infantum and L. panamensis was evaluated in a human leukemia monocyte cell line (THP-1 cells) as described previously (28). Briefly, THP-1 cells were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum, 2 mM glutamine, 100 IU of penicillin/ml, and 100 µg of streptomycin/ml. THP-1 cells in the log phase of growth were differentiated by incubation for 2 days in medium containing 20 ng of phorbol myristate acetate/ml (Sigma). These cells were washed with prewarmed medium and subsequently infected with stationary-phase L. panamensis promastigotes in 24-microwell plates (Falcon) at a parasite/macrophage ratio of 20:1 or with L. infantum axenic amastigotes at a parasite/macrophage ratio of 2:1. Noninternalized parasites were removed by several washes, and infected macrophages were put in contact with additive-free sodium stibogluconate (Pentostam). After 4 (for L. panamensis) or 5 (for L. infantum) days of drug exposure, wells containing adherent differentiated THP-1 cells were washed and the luciferase activity of the LUC-recombinant parasites was determined essentially as described elsewhere (25). Values were expressed as relative light units.
Confocal microscopy.
L. infantum cells transfected with an MRPA-GFP construct were immobilized with 2% paraformaldehyde (Sigma) and mounted on microscope slides with coverslips. Samples were viewed with an Olympus confocal scanning laser system installed on an Olympus IX-70 inverted microscope with an argon laser. Visualization of the fluorophore was achieved using a 488-nm excitation filter and 510/530-nm emission filter. Samples were scanned for green fluorescence using a 60x objective (numerical aperture, 1.40) and a 5x zoom. Transmitted light images were collected at the same time as fluorescent images. Images were obtained using the Olympus Fluoview 300 software and processed using Adobe Photoshop software.
Thiols analysis.
Thiols were derivatized with monobromobimane and separated by high-performance liquid chromatography as described elsewhere (22).

RESULTS
Characterization of the resistance phenotype in L. infantum Sb2000.1 axenic amastigotes.
To study resistance to antimonials in the amastigote stage of
the parasite, an
L. infantum axenic amastigote line was selected
for Sb(III) resistance (
4). The EC
50 of the wild-type sensitive
line was close to 4 µM, while the Sb2000.1 line had an
EC
50 greater than 4,000 µM (Fig.
1A). The stability of
the resistance phenotype was tested by passing the cells in
the absence of Sb(III). Resistance was found to be stable, and
it was only after 20 passages in the absence of the drug that
part of the resistance present in the mutant was lost (Fig.
1A). This revertant axenic amastigote cell line had an EC
50 of 800 µM, still 200-fold more resistant than the wild-type
cell. These cells were grown for 20 more passages in the absence
of drug, but the remaining resistance was stable (results not
shown). In our cell culture assay, axenic
L. infantum amastigotes
are not intrinsically susceptible to pentavalent antimony [Sb(V)]
(EC
50 of 1,250 µg/ml), but they are susceptible to sodium
stibogluconate when infecting macrophages, with an EC
50 of 75
µg/ml (Fig.
1B). Interestingly, the Sb2000.1 mutant selected
for Sb(III) resistance was cross-resistant to sodium stibogluconate
in our macrophage intracellular assay (Fig.
1B).
Analysis of resistance mechanisms in L. infantum by DNA microarrays.
For analyzing the expression of several drug resistance genes
in parallel, we have made customized DNA microarrays with PCR
fragments containing 44 genes involved in cysteine, glutathione,
trypanothione, folate, pterin, and methionine biosynthesis and
transport (
15). These arrays have already shown their usefulness
for the study of drug resistance in various
Leishmania species
(
15). We hypothesized that these arrays would be useful to study
resistance in the amastigote stage of the parasite. RNAs, derived
from
L. infantum Sb2000.1 and the susceptible parent strain,
were reverse transcribed, labeled, and hybridized to the customized
DNA microarrays. From the selected genes covered by the array,
none was found to be downregulated in the mutant, but three
genes appeared to be consistently upregulated as determined
by DNA microarrays when we applied a cutoff of at least twofold
differential expression. One gene corresponds to the ABC transporter
MRPA (PGPA) (
P < 0.003), a second one to
S-adenosylhomocysteine
hydrolase (SAHH) (
P < 0.01), and the third one to folylpolyglutamate
synthase (FPGS) (
P < 0.0001). These microarray results were
further studied by Northern blot analysis, and all three genes
were indeed found to be expressed at higher levels in the resistant
mutant than in susceptible cells (Fig.
2). Under our experimental
conditions, the RNA corresponding to MRPA could not be detected
in wild-type cells. Increased expression in
Leishmania, at least
in the promastigote stage, is sometimes the result of gene amplification
(
2,
3), but clearly other mechanisms can also lead to an increase
in RNA (
9,
17). The DNAs derived from
L. infantum wild-type
and Sb2000.1 cells were isolated, digested, blotted, and hybridized
to MRPA, SAHH, and FPGS probes. The
MRPA gene was found to be
amplified (Fig.
3A, lane 2). Additional work has shown that
MRPA is part of an extrachromosomal circle (results not shown).
This amplified DNA was lost in cells passaged 20 times in the
absence of the drug (Fig.
3A, lane 3). Concomitant with the
loss of this amplicon, part of the resistance was also lost
in the revertant line (Fig.
1A). Neither the
SAHH gene nor the
FPGS gene was amplified (Fig.
3), however.
Role of the ABC transporter MRPA in antimony resistance in Leishmania amastigote parasites.
In
Leishmania tarentolae promastigotes, MRPA is located intracellularly
and has been proposed to confer resistance by sequestering the
antimonials conjugated to thiols into an intracellular organelle
(
20). We first tested whether transfection of MRPA in
L. infantum axenic amastigotes could lead to Sb(III) resistance in this
stage of the parasite. Growth curve experiments clearly showed
that MRPA can indeed bestow resistance to Sb(III) in axenic
amastigotes (Fig.
4A). We also fused GFP to the MRPA C terminus
to yield MRPA-GFP. The MRPA-GFP fusion was active, as it led
to a twofold increase in resistance to Sb(III) in axenic amastigotes,
a level also observed with transfectants with the unfused MRPA
(Fig.
4A). The increase in resistance parallels that observed
in promastigotes (
20). The location of the MRPA-GFP fusion was
studied by confocal microscopy in axenic amastigotes and was
also found to be located intracellularly in this stage of the
parasite (Fig.
4B).
MRPA is thought to transport the antimonials conjugated to thiols,
including trypanothione, and, consistent with this hypothesis,
trypanothione and other thiols were found to be increased in
a number of resistant mutants of different
Leishmania species
(
16,
19,
22). Thiol levels were measured in the susceptible
and resistant axenic amastigote culture of
L. infantum. While
glutathione and trypanothione levels were similar between the
wild-type and Sb2000.1-resistant cells, the levels of cysteine
were increased by twofold in the mutant compared to the susceptible
cells (Fig.
5).
MRPA confers resistance to Sb(III) in axenic amastigotes (Fig.
4A) and, while Sb(V) is likely to be converted to Sb(III) (
7,
26,
36), Sb(V) is nonetheless the drug used in the treatment
of
Leishmania infections. Sb(V) has very little activity against
our axenic amastigote line (
27), and we therefore decided to
test the role of MRPA in intracellular parasites. Attempts to
study MRPA using
L. infantum have been inconclusive, in part
because of the rather high intrinsic resistance of the susceptible
strain (Fig.
1 and unpublished observations). In contrast,
L. panamensis was

10 times more sensitive to Sb(V) in our assay
(Fig.
6A), and we thus transfected the
MRPA construct in
L. panamensis. These recombinant parasites were used for infecting
the human monocyte cell line THP-1. Most interestingly, the
MRPA transfectants were clearly more resistant to Sb(V) than
were the control transfected lines (Fig.
6A). Buthionine sulfoximine
(BSO), a specific inhibitor of

-glutamylcysteine synthase, the
rate-limiting step in glutathione biosynthesis, was shown to
reduce antimony resistance in vitro (
17) and in vivo (
5). We
tested whether it could reduce MRPA-mediated resistance in intracellular
parasites. The results indicated that while the susceptibility
of control transfectants was not altered (Fig.
6C), the resistance
mediated by MRPA in intramacrophagic parasites was abrogated
in the presence of BSO (Fig.
6B).

DISCUSSION
Resistance to antimony has been induced in axenic amastigotes
(
4,
27,
29), although no genes have so far been linked to resistance.
In one study, a decrease in the rate of reduction of Sb(V) to
Sb(III) was correlated to Sb(V) resistance (
29). A number of
Leishmania proteins have recently been discovered that could
be related to this reductase activity (
7,
36), although the
molecular defects in the resistant line remains to be discovered.
Transport defects were also observed in
L. infantum axenic resistant
mutants (
4), and while one route of entry for Sb(III) in
Leishmania implicates the aquaglyceroporin AQP1 (
12), we have no evidence,
at least at the DNA level, that AQP1 is altered in Sb2000.1
(unpublished observations). DNA microarrays have recently been
used to study drug resistance in microorganisms (
1,
6), including
Leishmania (
15). Using DNA microarrays containing a limited
number of genes, we found three genes whose expression levels
were consistently altered in the Sb2000.1 resistant mutant.
One gene consists of
MRPA, and the role of MRPA was confirmed
by gene transfection in axenic amastigotes (Fig.
4) but even
more importantly in intracellular parasites (Fig.
6A). MRPA
was shown to confer resistance to antimonials in promastigote
cells by sequestration of the metal-thiol conjugates in an intracellular
organelle located close to the flagellar pocket (
20). This model
also appears to apply to amastigotes, since MRPA is an intracellular
protein, consistent with a localization close to the flagellar
pocket (Fig.
4B). Clearly, resistance genes other than
MRPA are present in the drug-selected mutant, since the loss of the
MRPA-containing amplicon in the revertant is associated with
a modest loss in resistance but the revertant cell is still
considerably more resistant than the wild-type susceptible isolate
(Fig.
1A). MRPA, being an intracellular protein, is likely not
responsible for the defect in antimonial accumulation described
in axenic amastigote resistant mutants (
4). At least two transport
systems are therefore involved in resistance: one corresponds
to MRPA, and a second one corresponds either to the aquaglyceroporin
AQP1 (
12) and/or a previously described efflux system (
8) that
still needs to be identified.
Two other genes were found to be overexpressed, SAHH and FPGS. SAHH is involved in the conversion of S-adenosyl homocysteine to homocysteine, a cysteine precursor. Interestingly, we found that cysteine levels were significantly higher in the mutant (Fig. 5). Possibly, an increase in cysteine can be either directly or indirectly (e.g., by serving as a precursor for glutathione in trypanothione biosynthesis) involved in the resistance phenotype by reacting with metals. These metal-thiol conjugates would be substrates for transporters. The SAHH gene was found to be amplified also in an L. tarentolae mutant selected for Sb(III) resistance (15) although, while the SAHH gene was overexpressed in Sb2000.1, the gene was clearly not amplified (Fig. 3C). FPGS is involved in the addition of glutamic acid residues to folic acid, and this gene is linked to methotrexate resistance (10). It is not clear how FPGS would be involved in Sb(III) resistance, but it is expected that a number of changes may occur in a cell upon drug selection (9) and some of these changes may not be directly linked to the resistance phenotype studied. These expression results confirm, however, that there are several mechanisms outside gene amplification that can lead to RNA overexpression despite the fact that this protozoan parasite is devoid of classical RNA polymerase II promoters.
In our study of antimony-resistant L. tarentolae, cysteine, glutathione and, in particular, trypanothione were found to be increased (16, 22). Cotransfection of glutathione biosynthesis genes and MRPA were shown to be synergistic when in the right background (13, 20). In L. infantum, the baseline levels of trypanothione are much higher (50-fold) than in L. tarentolae (5 versus 0.1 nmol/108 cells). An increase in trypanothione levels may therefore not be as essential in L. infantum for achieving resistance to antimonials, although it is worth pointing out that cysteine is increased. Thiols are nonetheless required for MRPA-mediated resistance, since treatment with BSO, a known specific inhibitor of glutathione biosynthesis, reversed MRPA-mediated resistance inside macrophages (Fig. 6B). Treatment with BSO was shown previously to reduce resistance to antimonials not only in vitro (17) but also in vivo (5). It is possible that BSO affects the thiol levels of both the macrophage and the parasite, and the collective effect would be decreased resistance to Sb(V) mediated by MRPA.
A major finding of this study is the ability of MRPA to confer Sb(V) resistance inside macrophages. The increase in resistance is quite impressive (Fig. 6) when taking into account that MRPA has a relatively modest effect in axenic amastigotes (Fig. 4A) or in promastigotes (23). It is possible that resistance is better achieved in the intracellular stage of the parasite or that the exquisite sensitivity of L. panamensis to Sb(V) makes it an ideal model. The resistance to Sb(V) mediated by MRPA (Fig. 6A) is similar to the increase in resistance observed with Sb2000.1 (Fig. 1), despite these cells being much more resistant to Sb(III) than MRPA transfectants. It is thus possible that the intracellular assay may not be quantitative and may only provide qualitative information on whether a strain is sensitive or resistant. Nonetheless, the intracellular assay has shown that it can correlate well with the clinical responses (21). Thus, if MRPA-overexpressing strains are present in the field, our results would suggest that these will be resistant to Sb(V). One possible way to circumvent resistance would be to provide a combination therapy consisting of Sb(V) and BSO, a combination that has been shown useful in animal models on field isolates with unknown genetic background (5).

ACKNOWLEDGMENTS
This work was funded in part by the CIHR group and operating
grants to M.O. and through a Wellcome Trust-Burroughs Wellcome
Fund New Initiative in Infectious Diseases program grant to
M.O. and N.G.S. K.E.F. is a Strategic Training Fellow of the
Strategic Training Program in Microbial Resistance, a partnership
of the CIHR Institute of Infection and Immunity and the Fonds
de Recherche en Santé du Québec. P.L. is the recipient
of a CIHR studentship, and G.C. is the recipient of NSERC and
FRSQ studentships. B.P. is a Burroughs Wellcome Fund New Investigator
in Molecular Parasitology and is an FRSQ senior investigator.
M.O. is a Burroughs Wellcome Fund Scholar in Molecular Parasitology
and holds a Canada Research Chair in Antimicrobial Resistance.

FOOTNOTES
* Corresponding author. Mailing address: Centre de Recherche en Infectiologie, CHUQ, pavillon CHUL, 2705 boul. Laurier, Ste-Foy, Québec, Canada G1V 4G2. Phone: (418) 654-2705. Fax: (418) 654-2715. E-mail:
marc.ouellette{at}crchul.ulaval.ca.


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