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Antimicrobial Agents and Chemotherapy, August 2005, p. 3256-3263, Vol. 49, No. 8
0066-4804/05/$08.00+0 doi:10.1128/AAC.49.8.3256-3263.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Biosynexus Incorporated, Gaithersburg, Maryland 20877
Received 14 December 2004/ Returned for modification 23 February 2005/ Accepted 22 May 2005
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11 mm using a 50-µg lysostaphin disk, while the three reference lysostaphin-resistant S. aureus variants had no zones of inhibition. In MBC assays, concentrations of lysostaphin ranging from 0.16 µg/ml to 2.5 µg/ml were found to cause a 3 log or greater drop from the initial CFU of S. aureus within 30 min for all strains tested. |
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As lysostaphin continues to be studied as a possible therapy for S. aureus, there is a need for a reliable method for determining lysostaphin susceptibility that can be used clinically to differentiate lysostaphin-susceptible strains of S. aureus from lysostaphin-resistant variants, should they ever emerge. Lysostaphin is a highly active enzyme that rapidly lyses S. aureus and acts differently from many conventional antibiotics, thus, traditional methods of determining antibiotic susceptibility may not be the most appropriate. In 1964, Schindler and Schuhardt employed a turbidity assay for quantitative analysis of lysostaphin (34).
In this study, we compared this turbidity assay with three more conventional methods for determining the susceptibility of various strains of S. aureus to lysostaphin, including MIC, minimum bactericidal concentration (MBC), and disk diffusion assays. These strains included methicillin-sensitive S. aureus (MSSA), methicillin-resistant S. aureus (MRSA), vancomycin intermediately susceptible S. aureus (VISA), mupirocin-resistant S. aureus, and several defined genetic mutants of S. aureus. We also included three in vitro-isolated lysostaphin-resistant S. aureus variants as negative controls in the various assays. We determined that the most simple and reproducible method for determination of lysostaphin susceptibility was the disk diffusion assay.
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TABLE 1. Lysostaphin susceptibility testing of various S. aureus strains
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TABLE 2. Lysostaphin susceptibility testing of various S. aureus strains and their defined genetic mutants
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Materials and chemicals. Recombinant homogenous lysostaphin was produced by Biosynexus Incorporated. Other materials and chemicals used were from various commercial sources as noted.
Turbidity assay. The procedure used was similar to the one employed by Schindler and Schuhardt (34) with modifications. S. aureus cells in an 18-h trypticase soy broth culture were pelleted and washed once with phosphate-buffered saline (PBS; BioWhittaker, Walkersville, MD). The cells were then resuspended in a volume of PBS such that the starting absorbance of the resuspended bacteria, as determined using a SmartSpec 3000 (Bio-Rad, Hercules, CA) at 650 nM, gave an absorbance reading of 1.55 ± 0.04. The turbidity assay was performed by adding 4 µg/ml or 5 µg/ml of lysostaphin to the S. aureus suspension and then determining the optical density at 650 nm (OD650) at 30-s intervals (30 min total duration). The time to reach half starting absorbance (TOD50) of the bacterial suspension was determined for each strain. A reference strain of S. aureus (ATCC 49521) was run in each assay and served to provide comparability between assays. Each S. aureus strain was assayed at least three times, and the mean ratio (sample TOD50/reference TOD50) and standard deviation were calculated for each strain.
MIC assay.
MIC assays were determined by the broth dilution method in a modification of standards of the NCCLS (23). The concentrations of lysostaphin used ranged from 0.25 µg/ml to 0.00025 µg/ml. Twofold dilutions of lysostaphin were performed in cation-adjusted Mueller Hinton broth (BD) supplemented with 2% NaCl (EM Science, Gibbstown, NJ) and 0.1% bovine serum albumin (BSA; Sigma, St. Louis, MO). Wells of a 96-well polystyrene plate (Corning Incorporated, Corning, NY) were inoculated with
5 x 105 CFU/ml S. aureus per well diluted from an overnight culture of the bacteria grown in TSB. A positive control for growth containing no lysostaphin was included in each assay. MIC determinations were performed in the presence of 0.1% BSA to inhibit nonspecific lysostaphin adherence to the polystyrene plate as previously reported (6). Microtiter plates were incubated at 37°C with shaking (200 rpm) for 24 h. The endpoint for this assay was complete inhibition of growth (MIC-0) at 24 h as determined by measuring the absorbance at 650 nM using a microplate reader. Following determination of the absorbance at 650 nM, excess lysostaphin was added to some plate wells with growth. A concentrated solution of lysostaphin (10 mg/ml) in PBS was added to select wells to equal a final concentration of 200 µg/ml. The microplate was then further incubated for 3 h at room temperature with slow rotation, and the absorbance at 650 nM was again determined. Each S. aureus strain was assayed at least twice.
Minimum bactericidal concentration (MBC) assay.
MBCs for lysostaphin were determined by a modification of the NCCLS standards (22). Briefly, twofold dilutions of lysostaphin ranging from 10 µg/ml to 0.16 µg/ml were made in PBS plus 0.1% BSA. S. aureus from an overnight TSB culture was diluted to a final inoculum of
106 CFU/ml in each lysostaphin dilution tube. A tube containing PBS plus 0.1% BSA but no lysostaphin was included as a control. The dilution tubes were incubated for 30 min at room temperature with vigorous shaking. At the end of 30 min incubation, an equal volume of 10 mg/ml Proteinase K (Sigma) in PBS was added to each tube to neutralize the remaining lysostaphin (19). A volume of each sample (100 µl) was plated on a blood agar plate (Remel, Lenexa, KS) to enumerate the surviving S. aureus. The minimum bactericidal concentration was defined as the dose of lysostaphin which led to a 3 log or greater drop from the starting bacterial concentration (99.9% killing of the initial inoculum). Each S. aureus strain was assayed at least twice.
Disk diffusion assay. Sterile 6-mm filter paper disks (Whatman No.1; Whatman International Ltd.) were each impregnated with between 0.005 to 50 µg of lysostaphin in PBS. Disks were allowed to dry at room temperature overnight and then stored at 20°C in a sealed container until used. To perform a pilot study, S. aureus strain ATCC 49521 from an overnight TSB culture was spread evenly on a cation-adjusted Mueller Hinton agar (BD) supplemented with 2% NaCl (CAMHA+) using a sterile swab, and then various disks containing between 0.005 and 50 µg of lysostaphin were placed on the agar surface. The CAMHA+ plate was incubated for 20 h at 37°C. Following the incubation, the diameter of zones of inhibition around the various lysostaphin disks were measured. To perform the disk diffusion assay for comparison of the various S. aureus strains, each S. aureus strain from an overnight TSB culture was spread evenly on CAMHA+ or brain heart infusion (BHI) agar (BD), and then a 20-µg (Hardy Diagnostics, Santa Maria, CA) or 50-µg (prepared for this study) lysostaphin disk was placed on the agar. The plates were incubated for 20 h at 37°C. Following the incubation, the diameter of zones of inhibition around the lysostaphin disks were measured. Each S. aureus strain was assayed at least three times, and the mean zone of inhibition and standard deviation were calculated for each strain.
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FIG. 1. An example of data from a turbidity assay for several S. aureus strains, including ATCC 49521 (reference strain), MBT5040 LysoR (in vitro isolated lysostaphin-resistant variant), SA3865 (MupR), MBT5040 (MRSA), XS (MSSA), and HIP5827 (VISA), as indicated on the figure. The time to 50% of the starting OD (shown as "OD50 average" on the figure) was determined for each strain as indicated on the figure by the vertical lines.
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After 24 h of incubation in the presence of lysostaphin, some wells were observed to have bacterial growth above the apparent MIC level for some of the S. aureus strains (Fig. 2A). The bacteria in these wells were found to be S. aureus by microbiologic methods (data not shown) and were further tested for lysostaphin susceptibility by adding an additional 200 µg/ml lysostaphin in a small volume of PBS to all wells with visible growth. Wells with growth that were not originally exposed to lysostaphin (control wells) or wells below the actual lysostaphin MIC had a dramatic drop in absorbance over 3 h of incubation following the addition of excess lysostaphin as the lysostaphin lysed the S. aureus in the wells (Fig. 2B). "Resistance-outgrowth" was defined as wells that displayed no drop in absorbance following the 3-h incubation with excess lysostaphin (Fig. 2B). This "resistance-outgrowth" phenomenon did not occur for every strain of S. aureus and did not even occur in every assay with any particular strain of S. aureus.
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FIG. 2. An example of a MIC assay plate for S. aureus ATCC 49521 and the phenomenon termed "resistant outgrowth." (A) MIC plate after 24 h of incubation, the MIC for this strain was 0.016 µg/ml (labeled as "16" on the figure). The concentrations of lysostaphin used ranged from 0.25 µg/ml to 0.00025 µg/ml. (B) The same MIC plate following several hours of incubation with excess lysostaphin. Wells with growth at 0.008 µg/ml (labeled as "8" on the figure) and above were tested for lysostaphin resistance outgrowth by adding an extra 200 µg/ml lysostaphin to these wells and then incubating the plate at room temperature for several additional hours. All of the wells initially at 0.008 µg/ml lysostaphin were clear after incubation with excess lysostaphin, which indicated that this was growth of normal S. aureus at that concentration of lysostaphin. The wells above 0.008 µg/ml indicated with arrows remained cloudy and were due to outgrowth of lysostaphin-resistant S. aureus.
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Lysostaphin susceptibility determined by disk diffusion assay. A pilot study was conducted with S. aureus ATCC 49521 and various concentration lysostaphin disks (0.005 to 50 µg/disk) to determine the optimum amount of lysostaphin per disk. The ideal disk concentration is one that provides zones of inhibition with diameters between 15 and 25 mm for most susceptible strains, with only small or no zone of inhibition diameters with resistant strains (21). The following zones of inhibition were determined for ATCC 49521 after 20 h incubation: 0.005- to 0.50-µg disks resulted in no zone of inhibition, while a 5-µg disk gave a 10-mm zone of inhibition, and a 50-µg lysostaphin disk gave an 18-mm zone of inhibition. Thus, 50-µg lysostaphin disks were chosen to be used in subsequent studies.
The three reference lysostaphin-resistant S. aureus variants did not have any zone of inhibition around 50-µg lysostaphin disks, while all the other strains tested had zones of inhibition after 20 h of incubation at 37°C with 50-µg lysostaphin disks which ranged from 11 to 20 mm (Tables 1 and 2). Commercially available 20-µg lysostaphin disks were also tested on several S. aureus strains. These 20-µg disks showed proportionally smaller zones of inhibition for lysostaphin-sensitive strains, as expected (ranging from 9 to 14 mm following 20 h of incubation in 37°C). For some of the disk assays conducted with 20-µg lysostaphin disks, however, it was difficult to distinguish lysostaphin-susceptible strains from lysostaphin-resistant variants due to the very small zones of inhibition.
Occasionally, very small colonies were present within the lysostaphin zones of inhibition for some S. aureus strains (data not shown) on CAMHA+. These small colonies were further tested for lysostaphin resistance on trypticase soy agar containing 10 µg/ml lysostaphin and found to be susceptible to lysostaphin, as no growth was seen (data not shown). It was suspected that these small colonies may be small-colony variants (29), and when BHI agar was substituted for CAMHA+, no small colonies were observed in the zones of inhibition around 50-µg lysostaphin disks (data not shown). As a follow up, stable small-colony variants were obtained and tested for susceptibility to lysostaphin by various assays. The two stable small-colony variants tested were susceptible to lysostaphin by all methods used (Table 1).
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FIG. 3. A graphic comparison of the MIC (log 2) values of lysostaphin (in micrograms/milliliter) with the zones of inhibition (in millimeters) around 50-µg lysostaphin disks for 31 strains of S. aureus.
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An example of in vitro selection of lysostaphin-resistant variants was seen in the phenomenon of "resistance outgrowth" during MIC testing of some strains of S. aureus. Spontaneous DNA mutations that affect femA during overnight growth of the starter inoculum cultures could lead to a minute subpopulation of lysostaphin-resistant variants present in the starter culture and thus in some wells of the MIC assay. The conversion rate to lysostaphin resistance has been reported as being between 4 x 101 and 7.6 x 107 for seven MRSA strains (5), while in our hands, conversion rates of various strains of S. aureus to lysostaphin resistance ranged from 3 x 106 to <3 x 109 (unpublished data). Lysostaphin-resistant variants of S. aureus strains are less fit and slower growing than their wild-type counterparts (38) and would normally be rapidly outgrown by the healthier wild-type bacteria. During the lysostaphin MIC assay, however, the wild-type S. aureus in the initial inoculum would be quickly killed if sufficient concentrations of lysostaphin are present in a certain well, thus allowing the outgrowth of any lysostaphin-resistant variant (if present) in the well. This phenomenon was not seen with every strain of S. aureus or even reproducibly with every assay of a particular strain. Resistance outgrowth in MIC testing does not necessarily reflect in vivo events inasmuch as lysostaphin-resistant variants are more frequently isolated in vitro (5) than in vivo (6, 19, 26). Furthermore, while the MIC assay is commonly used for the determination of antibiotic susceptibility, it may not be the most appropriate assay for a rapidly acting lytic enzyme like lysostaphin, since the MIC assay measures the growth inhibition activity of an antimicrobial agent while lysostaphin would likely kill the initial inoculum.
The disk diffusion assay was the most simple and reproducible assay to differentiate lysostaphin-susceptible from lysostaphin-resistant strains of S. aureus. All strains tested, except for the three reference lysostaphin-resistant variants, had zones of inhibition of
11 mm, and this is in agreement with a study by von Eiff et al. (42). Despite lysostaphin being very staphylocidal, 50 µg of lysostaphin per disk was required to produce a usable zone of inhibition for assay purposes. Furthermore, the zones of inhibition for increasing concentrations of lysostaphin on disks did not appear proportional as might have been expected. Lysostaphin is a highly charged 27-kDa protein (3), while most conventional antibiotics are fairly small (<500 Da) molecules; it is likely that lysostaphin does not easily diffuse through agar compared to smaller antibiotics, thus, higher concentrations of lysostaphin are required for effective testing using disks on agar. The lack of proportionality of the zones of inhibition noted with lower concentrations of lysostaphin are likely due to the nature of the lysostaphin molecule. This theory was supported by the observation that prolonged incubation (more than 20 h) of agar plates with 50-µg lysostaphin disks led to growing zones of secondary lysis which continued to expand over time as the lysostaphin continued to diffuse through the agar and lyse S. aureus; this observation was also made by von Eiff et al. (42).
During disk diffusion testing with lysostaphin on CAMHA+, very small colonies were observed growing within the zone of inhibition around the 50-µg lysostaphin disk for some strains of S. aureus. These colonies were suspected to be small-colony variants (29), a conclusion which was supported by the finding that these small colonies did not appear around lysostaphin disks when the assay was conducted on BHI agar. The auxotrophic small-colony phenotype can be reversed by supplying certain nutrients available in a rich medium like brain heart infusion (BHI) agar (29). As a follow-up, two stable small-colony variants were obtained and found to be susceptible to lysostaphin by all four assays (Table 1).
This study also included a number of defined genetic mutants of S. aureus from various sources (Table 2). Many of these strains had mutations that affected the outer surface of the bacteria (e.g., ATCC 35556
tagO, which does not make wall teichoic acid [43], or SKM 14, in which both sortases A and B have been disabled, leading to reduced trafficking of proteins to the bacterial surface [44]), while other mutants were disrupted for various regulatory systems (e.g., SH1001 [17] and SH2 1002 [17]). All mutants tested remained susceptible to lysostaphin by all four test methods, suggesting that many mutations that might occur naturally in S. aureus would not render the resulting mutants resistant to lysostaphin. There was some variability in lysostaphin susceptibility when comparing mutants with their wild types depending on which assay was used, but this was not consistent across all four assays, which further supports the theory that each of these assays actually measures the interaction of lysostaphin with S. aureus under different conditions and that while relative lysostaphin susceptibility may vary from assay to assay, all four assays can differentiate lysostaphin-susceptible strains of S. aureus from lysostaphin-resistant variants.
There have been reports in the literature that some VISA strains may be less susceptible to lysostaphin (2, 18, 27) than their parental strains. Two of these studies were conducted with in vitro passage-selected VISA strains which may not reflect in vivo selection of vancomycin-intermediate susceptibility (18, 27), and one of those studies (18) used a turbidity assay to assess lysostaphin susceptibility, and as demonstrated in our study, the lysostaphin turbidity assay may only reflect part of the interaction of lysostaphin with a particular strain of S. aureus. The VISA strain (NRS79) with reported resistance to lysostaphin from the third study (2) was examined in our study, and while this strain did have a somewhat higher lysostaphin MIC, it had similar lysostaphin susceptibility to the other S. aureus strains by the other three assays (Table 1). Indeed, NRS79 was a strain of S. aureus which consistently displayed lysostaphin "resistance outgrowth" upon MIC testing (data not shown), which may have lead to the mischaracterization of this strain as lysostaphin resistant, since it was characterized as lysostaphin resistant by MIC testing in the original study (2). Furthermore, our study also included several other clinical VISA isolates (Table 1) which were all susceptible to lysostaphin in all of the assays used. While the changes in VISA strains that are believed to be responsible for the reduced susceptibility to glycopeptides (1) may appear to affect lysostaphin susceptibility of some strains depending on the assays used, it is clear from this study that lysostaphin retains the capacity to kill clinical VISA isolates (Table 1) and thus may provide alternative therapy for VISA infections. Furthermore, Patron et al. demonstrated that lysostaphin is an effective alternative therapy for experimental aortic valve endocarditis caused by clinical VISA strains (26).
Based on the findings of this study, the disk diffusion assay appeared to be the most simple and reproducible method for differentiating lysostaphin-susceptible S. aureus strains from lysostaphin-resistant variants. The MBC assay can be used as a follow-up assay for questionable strains to determine actual lysostaphin susceptibility concentrations, since it measures the staphylocidal activity of lysostaphin. Assignment of in vitro susceptibility criteria for lysostaphin in accordance with NCCLS guidelines (21) will require more research and may require adaptations in the guidelines to accommodate this unique rapidly cidal protein. This study, however, lays the ground work for this continuing research and provides direction for the continuing development of lysostaphin as an anti-staphylococcal agent.
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