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Antimicrobial Agents and Chemotherapy, October 2006, p. 3343-3349, Vol. 50, No. 10
0066-4804/06/$08.00+0 doi:10.1128/AAC.00367-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Centre National de Référence du Paludisme, Laboratoire de Parasitologie, AP-HP, Hôpital Bichat-Claude Bernard, and Université René Descartes, Paris,1 INSERM U738, Université Paris 7, and AP-HP, Hôpital Bichat-Claude Bernard, Département d'Epidémiologie, Biostatistique et Recherche Clinique, Paris, France2
Received 25 March 2006/ Returned for modification 13 May 2006/ Accepted 15 July 2006
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= 0.88) between the two methods allowed comparison by determination of the IC50s. Recently collected Plasmodium falciparum African isolates were tested by pLDH ELISA and showed drug resistance or decreased susceptibilities of 62% to chloroquine and 11.5% to the active metabolite of amodiaquine. No decreased susceptibility to lumefantrine or the active metabolite of artemisinin was detected. The availability of this simple and highly sensitive pLDH immunodetection assay will provide an easier method for drug susceptibility testing of malaria parasites. |
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A first study was performed to compare the intra-assay variabilities of the two methods and to compare the results obtained by these two methods. This study measured the susceptibilities of the five cultivated strains to chloroquine and monodesethyl-amodiaquine (md-amod). The initial parasite density was 0.5%. Eight to 10 replicated tests with the same parasite suspension were run simultaneously for each strain, drug, and method of comparison (the ELISA and the isotopic assay). A second study estimated the sensitivities of the two methods by using strains 3D7 and 7G8 and four antimalarial drugs (chloroquine, md-amod, lumefantrine and dihydro-artemisinin [dh-artem]). The initial parasite density was 0.5%, 0.1%, 0.05%, 0.01%, or 0.005%.
(ii) Clinical isolates. A total of 121 clinical isolates collected during 2003 and 2004 from patients returning from Africa with P. falciparum infection were sent to us from French hospitals for in vitro susceptibility testing. Each isolate was tested for its susceptibility to one to four drugs, depending on the whole-blood volume available. The isotopic assay and the ELISA were run with the same parasite suspension for each isolate. As drug susceptibility testing is a routine method of analysis of the EDTA-anticoagulated venous blood sample taken for the diagnosis of malaria, no informed consent was required. These clinical isolates were used to compare the results obtained by the two methods and to evaluate the correlation between the results of the two methods. The sensitivities of the two methods were confirmed with one patient isolate. The initial parasite density was 0.5%, 0.1%, 0.05%, 0.01%, 0.005%, or 0.0025%.
In vitro assay. The following four antimalarial drugs in the appropriate solvent were distributed on 96-well tissue culture plates (4 by 24 wells) and dried: chloroquine disulfate (Sigma Aldrich), 12 to 3,200 nM; md-amod (Pfizer-Parke Davis), 7.5 to 1,920 nM; lumefantrine (Novartis), 1.25 to 320 nM; and dh-artem (Sanofi Aventis), 0.25 to 64 nM. Each batch of plates was controlled by measuring the susceptibilities of strains W2 Indochina and 3D7 Africa to the corresponding drugs, which were used within 1 year (chloroquine and md-amod), 4 months (lumefantrine), or 8 weeks (dh-artem), according to their previously determined shelf-lives (unpublished data). For each drug tested, three control wells were drug free, and each concentration was studied in duplicate or triplicate. Clinical isolates with at least a 0.2% parasite density were included in the study and were maintained at +4°C (for up to 48 h after collection) before a culture was started. The blood samples were washed three times with a solution of RPMI 1640 (Gibco, Invitrogen life Technologies) plus 25 mM HEPES (Sigma) and 25 mM NaHCO3 (Sigma). The blood samples were then resuspended in the same culture medium supplemented with 10% human serum (Abcys Biowest, Paris, France), but without hypoxanthine supplementation. If necessary, a dilution was performed by adding uninfected O-positive-group erythrocytes (EFS, Rungis, France) to obtain a 0.5% parasite density and a 1.5% hematocrit. The plates were incubated for 42 h at 37°C in a CO2 incubator (5% CO2 in air) and were then frozen and kept at 20°C.
Isotopic measurement.
For the isotopic assay, 1 ml RPMI 1640 with [8-3H]hypoxanthine (40 mCi/liter; Amersham Biosciences) was added to 20 ml of the homogeneous parasite suspension (
0.4 µCi [8-3H]hypoxanthine/well) at the beginning of the in vitro assay. After the plates were thawed, the content of each well was harvested onto fiber filter disks (FilterMAT; Skatron Instruments). The fiber filter papers were washed and dried and mixed with 2 ml of scintillation fluid (OptiScint; Perkin-Elmer), and the level of parasite incorporation of radioactivity (in counts per minute) was measured with a liquid scintillation counter (Wallac 1410; Perkin-Elmer).
pLDH measurement by ELISA. For the ELISA, 1 ml RPMI 1640 without [8-3H]hypoxanthine was added to 20 ml of the homogeneous parasite suspension at the beginning of the in vitro assay. After the plates were thawed, the hemolyzed culture was homogenized by strong shaking of the plates for 15 to 20 min on a rotating platform. The success of the drug susceptibility assay and the appropriate volume of hemolyzed culture (from 1 to 20 µl) were previously determined for each clinical isolate by using a preliminary pLDH ELISA as a pretest. The pretest was performed with a couple of homogeneous culture wells: a 100% well (with no drug) and a 0% well (with the maximum concentration of chloroquine or dh-artem). Six wells for each isolate were needed on the ELISA plates: three dilutions (2 µl, 5 µl, and 15 µl) from both the 100% well and the 0% well were added to the wells of the ELISA plate, which contained lysis buffer, and two ELISA pLDH controls were used each time that an ELISA series was run. A test was designated as having failed if the ratio of the optical density (OD) for the 100% well to the OD for the 0% well was less than 1.7. For successful cases, the pLDH ELISA was performed as described below; the volume used was that which corresponded to the 100% well which had an OD closest to 1.5. The pLDH ELISA was done by using a commercial kit, as recommended by the manufacturer (ELISA-Malaria antigen test; DiaMed AG). Briefly, the ELISA plates were coated with a monoclonal antibody (MAb) against pan-Plasmodium LDH. Lysis buffer (100 µl) and, subsequently, 1 to 20 µl of hemolyzed culture or 50 µl of either a positive or a negative pLDH control were transferred to the ELISA plate wells. The ELISA plates were incubated for 1 h at 37°C with shaking and were then washed. After the addition of 100 µl per well of a biotinylated MAb against pan-Plasmodium LDH, the plates were incubated for 30 min at 37°C and then washed. A third incubation for 15 min at 37°C with 100 µl of a streptavidin-horseradish peroxidase solution was followed by a last washing step. Enzyme activity was revealed by incubation for 15 min at 37°C with 100 µl of tetramethylbenzidine, the reaction was stopped with sulfuric acid, and the absorbance was read with a microplate spectrophotometer (LP400; Bio-Rad) at 450 nm with a reference wavelength of 620 nm. The test was then scored as a failure if at least one of the three following criteria was not met: (i) if the mean value for the 100% wells was <0.5 (OD) for the ELISA or <400 cpm for the isotopic assay or (ii) if the ratio of the mean value for the 100% wells to that for the 0% well was less than 1.7. These validity criteria correspond to a failure of culture. A third validity criterion linked to modeling is explained below.
Statistical analysis.
The results of one test, for one drug and for one isolate or strain, are composed of 22 to 24 values of the counts per minute (isotopic assay) or the ODs (ELISA assay) for 10 different drug concentrations. For each drug concentration, the empirical mean of duplicate or triplicate values was analyzed. For each drug tested, a maximum of 10 mean values was obtained and is expressed as a percentage of the activity (hypoxanthine uptake or pLDH production) of the controls (mean of the values for the 100% wells). The resulting curve depicts an inhibition sigmoid curve that shows a decrease in the activity of the parasite toward zero when the drug concentration increases. The useful parameter for the monitoring of resistance is the concentration that inhibits 50% of the parasite's activity (IC50). Up to now, most laboratories working on in vitro assays estimated the IC50 by log-probit analysis or nonlinear regression analysis with polynomial fitting of the curve, with the need for the user to fix the degree of smoothness, which influences the estimation of the IC50. In these tests the estimated IC50 is generally provided without a standard error or a confidence interval. We developed a method to estimate IC50 on the basis of the use of statistical tools for nonlinear regression. The model is an inhibitory sigmoid Emax model, which is often used in pharmacology: activity (percent) = 100 [(100 x C
)/(C
+ IC50
)], where C corresponds to the drug concentration (in nanomolar) and
is the sigmoidicity factor. The initial value and the asymptotic result for high concentrations were fixed to 0% and 100%, respectively. Therefore, two parameters were estimated: the IC50 (and its confidence interval) and
. This approach was implemented in a function called IC50.R, which is based on the nonlinear least squares function of the free statistical software R (the R project for statistical computing). The failure of the modeling observed in a few cases was reconsidered when the response to the drug was very steep by a second estimation of the model but with
fixed to 10. After successful modeling was performed, a third criterion for rejection of a test result (in addition to the two criteria described above for culture failure) was a ratio of the higher limit of the 95% confidence interval over the lower limit of the 95% confidence interval for the estimated IC50 greater than 3. A failure due to this criterion was named failure after modeling.
For each strain and each drug, the replicate values of IC50 obtained by the enzymatic and isotopic assays, respectively, were compared by the nonparametric Wilcoxon rank test. For all the clinical isolates for which interpretable results were provided both by pLDH ELISA and by the isotopic assay, the means of the IC50s of each drug tested were compared by the paired t test. Clinical isolates were also identified as chloroquine resistant or chloroquine susceptible on the basis of an IC50 cutoff of 100 nM. The IC50s between these two groups for each of the three other drugs and for each assay method were compared by using a Wilcoxon rank test. From these results, the prevalence of resistance or decreased susceptibility to each drug was calculated and expressed with their nonparametric confidence intervals. The relationship between the two measurement methods was studied by use of the individual log IC50s of the four drugs tested by using the Pearson correlation test and a Bland and Altman plot. The Bland and Altman plot is used to study the level of agreement between methods and to show data dispersion. In this plot, each point corresponds to one isolate tested with one drug and represents the difference of the ELISA log IC50s (A) minus the isotopic log IC50s (B) plotted against their mean, i.e., A B versus (A + B)/2. This graph displays, by horizontal lines, the mean difference of the log IC50s and the mean difference plus and minus two times the standard deviation of the differences, with the latter corresponding to the limits of agreement of the two techniques. According to previous studies (2, 16, 17), a cutoff defining phenotypic resistance is available only for chloroquine and is an IC50 of >100 nM by the isotopic assay. Nevertheless, cutoffs for decreased susceptibility to md-amod, lumefantrine, and dh-artem were estimated to be 80 nM, 150 nM, and 10 nM, respectively.
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was fixed equal to 10. Further analysis assessed the sensitivity of the drug susceptibility assay. The results presented in Fig. 1 were determined for strains 3D7 and 7G8 at different initial parasite densities. The drug response was interpretable with initial parasite densities of 0.5% to 0.05% for the isotopic assay and 0.5% to 0.005% for the pLDH ELISA. Thus, the limits of sensitivity were attained at 0.005% for the pLDH ELISA (six of eight tests met the validity criteria) and at 0.05% for the isotopic assay (the eight tests met the validity criteria but were close to their limits). These results were confirmed by use of a clinical isolate (data not shown). |
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TABLE 1. Comparison of replicate IC50 measurements performed by the isotopic and pLDH ELISA methods with five reference clones of P. falciparum tested against two drugs
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FIG. 1. Sensitivities of two modes of drug-response assessment. Tendency curves for the IC50s with upper confidence intervals determined by the isotopic assay (open symbols, dotted lines) and the ELISA-Malaria antigen test assay (closed symbols, continuous lines) are shown for each drug tested with two P. falciparum strains, strains 3D7 (A) and 7G8 (B). The IC50s of chloroquine (squares), monodesethyl-amodiaquine (triangles), lumefantrine (diamonds), and dihydro-artemisinin (circles) were assessed at different initial parasite densities: 0.5%, 0.1%, 0.05%, 0.01%, and 0.005%.
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. Of all the tests that failed (92 of 582), failures were mainly determined before modeling, with the ratio of the OD for the 100% well to the OD for the 0% well in the pretest being less than 1.7. Among the 121 clinical isolates tested, 89 had an interpretable in vitro assay results both by the ELISA and by the isotopic method. Comparisons of the results for these isolates obtained by the two methods are illustrated in Table 2 and Fig. 2 to 4. Among the remaining isolates, in vitro analysis by the two methods failed for 18 of 121 isolates (14.9%). The response was interpretable only by the ELISA for 9 of 121 isolates (7.5%) and only by the isotopic assay for 5 of 121 isolates (4.1%). The failure rates of the isotopic assay and the enzymatic assay were similar, 22.3% (27 of 121 isolates) and 19% (23 of 121 isolates), respectively. The mean IC50s were significantly higher for the ELISA than for the isotopic assay for chloroquine, md-amod, and lumefantrine (P < 0.0003) but not for dh-artem (P = 0.061) (Table 2). Examples of the dose-response curve fit by the Emax model for a chloroquine-susceptible isolate and a chloroquine-resistant isolate analyzed by the two methods are shown in Fig. 5. The prevalence of resistance or decreased susceptibility determined for natural isolates by either the isotopic assay or the ELISA method was similar for chloroquine and also for md-amod (Table 2). For the African isolates studied by the pLDH ELISA, the prevalence of resistance was 0.62 (95% confidence interval, 0.5 to 0.73) for chloroquine (n = 79). The prevalences of decreased susceptibility were 0.11 (95% confidence interval, 0.05 to 0.22) for md-amod (n = 61), 0 (95% confidence interval, 0 to 0.08) for lumefantrine (n = 42), and 0 (95% confidence interval, 0 to 0.09) for dh-artem (n = 40). We compared the IC50s of the three other drugs for chloroquine-resistant and chloroquine-susceptible isolates tested by the two assay methods (Table 3). By both methods, md-amod was significantly less active against chloroquine-resistant isolates (P < 0.0001). Conversely, lumefantrine and dh-artem were significantly less active against chloroquine-susceptible isolates by the isotopic method of determination. However, the difference did not reach statistical significance by ELISA determination. The correlation between the log IC50s obtained by the two assays revealed a significant correlation for chloroquine (r = 0.94; n = 79; P < 0.0001), md-amod (r = 0.91; n = 61; P < 0.0001), lumefantrine (r = 0.78; n = 42; P < 0.0001), and dh-artem (r = 0.72; n = 40; P < 0.0001). For all tests with all drugs (n = 222), r was 0.98 (Fig. 3). We found a global kappa coefficient of 0.88 for all 222 measurements. In the Bland and Altman plot (Fig. 4), the mean difference in the log IC50s of the four drugs determined by the ELISA and the isotopic assay was 0.11 (limits of agreement, 0.22 to 0.44). This suggests that globally higher IC50s are obtained by the ELISA than by the isotopic assay. The limits of agreement that correspond to the confidence interval for the mean difference define the range containing 95% of the differences. No tendency for a greater or smaller difference between the two methods was shown as the IC50s increased. |
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TABLE 2. Comparison of the isotopic and pLDH ELISA measurements for clinical isolates of P. falciparum tested against four drugs
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FIG. 2. Individual IC50 estimations and 95% confidence intervals (bars) of chloroquine for P. falciparum isolates 1 to 79 obtained by the pLDH ELISA and the [8-3H]hypoxanthine isotopic assay. The cutoff for phenotypic resistance to chloroquine is 100 nM.
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FIG. 4. Bland and Altman graph of the difference in log IC50s between the two methods (pLDH ELISA and isotopic assays) for chloroquine, monodesethyl-amodiaquine, lumefantrine, and dihydro-artemisinin plotted against the mean values. The estimated mean difference (0.11) and its confidence interval (±2 standard deviations) were calculated and are drawn as horizontal lines. As the IC50s increase, no tendency for greater or smaller differences between the methods is observed on the plot.
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FIG. 5. Examples of curve fittings by the Emax model. The chloroquine dose-responses curves for isolates from two patients, one chloroquine susceptible (circles) and one chloroquine resistant (squares), are presented for the ELISA (closed symbols) and the isotopic (open symbols) determinations.
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TABLE 3. Isotopic and pLDH ELISA measurements for clinical isolates of P. falciparum tested against four drugs according to chloroquine susceptibility
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FIG. 3. Correlation between the logarithm of the individual IC50s (in nanomolar) for chloroquine, monodesethyl-amodiaquine, lumefantrine, and dihydro-artemisinin determined by the pLDH ELISA and the isotopic assays (n = 222; r = 0.98; P < 0.0001).
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equal to its maximum value of 10. Other fittings that present a biphasic response may require a more sophisticated analysis (22). For cases of imported malaria, the history of the cases is sometimes complex, as patients may have provided self-treatment or the transmission of isolates for culture may have been delayed, which may explain the majority of the culture failures that were observed. In the test comparisons, the intra-assay variabilities of both the pLDH ELISA and the isotopic assay with culture-adapted strains were rather similar. This validates the ability of the pLDH ELISA to provide precise IC50 determinations. As for the clones, we found that for field isolates the geometric means of the IC50s were higher by the pLDH ELISA than by the isotopic assay; the difference was significant for three of the four drugs tested. This observation is consistent with those from a previous study which also showed higher mean IC50s of chloroquine and lumefantrine by the DELI pLDH ELISA than by isotopic determination (4). Unlike our results, the mean IC50 of dh-artem determined by the DELI assay was lower than that determined by the isotopic assay. In this comparison study, the growth conditions of the parasites were strictly identical, and the concentration of 65 nM labeled hypoxanthine added in the isotopic assay was thought to be unlikely to enhance the metabolism of the parasites (1). Therefore, the higher values obtained by the ELISA could be explained only by the differences in metabolic pathways (hypoxanthine incorporation and protein production) used to assess the inhibition of growth (20). Despite the agreement that we found between the two methods (
=0.88), with the values being very close for chloroquine-susceptible isolates (Table 3; Fig. 5), the cutoffs for resistance and decreased susceptibility by the pLDH ELISA may have to be reconsidered. The mean ratio of the mean IC50 determined by the ELISA and the mean IC50 determined by the isotopic assay was 1.39 ± 0.59. The cost of the commercially available pLDH ELISA-Malaria antigen test must be considered. As underlined by Noedl et al. (14), the preparation and standardization of an ELISA require specific skills. The economy gained in running an in-house ELISA is then balanced with the constraints of controlling numerous steps and reagents. The costs of reagents for the pLDH ELISA are approximately the same as those for the isotopic assay, but new methods such as the SYBR green or PicoGreen fluorescence assays are much cheaper (7, 19). This is balanced with the cost of equipment, which is higher for the isotopic and the fluorescence assays than for the classical ELISA. Moreover, the applicability of the fluorescence assays to clinical isolates, where parasitized erythrocytes are often mixed with leukocytes, needs to be confirmed. The sensitivities of these fluorescence assays also need to be confirmed. The SYBR green assay proved successful for cultured strains with 0.2 to 2% initial levels of parasitemia (19). According to our results, the prevalence of resistance to chloroquine is greater than 62% for all African isolates studied by the pLDH ELISA, and the rate of decreased sensitivity to the active metabolite of amodiaquine is less than 12%. This decreased sensitivity to md-amod is only found within chloroquine-resistant isolates. As expected, according to the results of recent field studies, no decreased susceptibility to lumefantrine or to the active metabolite of artemisinin, which are the major components of the artemisinin-based combined therapies deployed in Africa, has been detected. These are preliminary data, and several field studies are in their early stages. As for rapid diagnostic tests, the availability of quantitative ELISA malaria antigen tests for surveillance for drug resistance may permit high-quality data to be obtained. Such data could be instrumental in assisting with the more rational use of antimalarial drugs.
H. Kaddouri is the recipient of a joint Ph.D. fellowship (CIFRE) from the French Ministry of Research and DiaMed AG. This study was funded by the French Ministry of Health through the Malaria National Reference Center. DiaMed AG made kits available for the study without restriction or knowledge of the design of the study.
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