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Antimicrobial Agents and Chemotherapy, December 2006, p. 4153-4160, Vol. 50, No. 12
0066-4804/06/$08.00+0 doi:10.1128/AAC.00750-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Biotechnology & Food Engineering, Laboratory of Antimicrobial Peptides Investigation (LAPI), TechnionIsrael Institute of Technology, Haifa, Israel,1 Institute of Dental Sciences, Faculty of Dental Medicine, Hebrew UniversityHadassah, Jerusalem, Israel2
Received 21 June 2006/ Returned for modification 1 August 2006/ Accepted 4 October 2006
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Dermaseptins are linear AMPs (12, 14, 24) whose lytic activity is mediated by interaction of N-terminal residues with the plasma membrane (30, 36). Previous structure-activity relationship studies yielded potent derivatives, of which the 15-mer dermaseptin S4 derivative S4(1-15) demonstrated the highest antibacterial activity (14), while a recent study showed the potent bactericidal effect of this derivative against oral bacteria (1).
N-terminal acylation of various dermaseptin S4 derivatives was shown to result in increased antimicrobial potency. Similar results were obtained with other AMPs (2, 12, 38). However, in various cases, acylation was shown to be deleterious to antimicrobial potency, especially when using long-chain acyls. Self-assembly in solution might at least partly explain this behavior (38, 53). To circumvent the risk of excessive hydrophobicity of acyl-peptides, we attempted in this study to limit hydrophobicity increase by exchanging the hydrophobic N-terminal amino acid residues with a fatty acid of moderate length (heptanoic [C7] or dodecanoic [C12] acid) or hydrophobicity (aminoheptanoic or aminododecanoic acid). This strategy was inspired by results obtained in previous investigations showing that truncation of 3 to 4 residues from the N terminus of the active sequence of various AMPs significantly hampered antimicrobial activity (14, 34, 52). We therefore tested the hypothesis that a combination of truncation and acylation strategies would play a compensational role.
In the present work, acyl moieties were conjugated to truncated derivatives of S4(1-15) in an attempt to maintain or improve the peptide's large-spectrum properties towards potential topical applications, such as in the treatment of oral mucositis. Oral mucositis is a painful condition and a major cause of morbidity in cancer patients, resulting from the cytotoxic effects of radiation or chemotherapy on rapidly dividing epithelial cells of the oropharyngeal mucosa (31). This therapy alters the ecological balance, thereby allowing some of the resident oral flora, which consists of hundreds of microbial species normally harmless to healthy people, to initiate a pathogenic process (13). Opportunistic pathogens are also thought to exacerbate this condition, leading to ulceration and inflammation of the buccal and sublingual mucosae (13, 31). Several antimicrobial agents were clinically evaluated as treatments for oral mucositis, including the protegrin analog IB-367, which is currently undergoing phase 3 clinical trials (46). The reasons for selecting IB-367 for potential treatment of oral mucositis included its rapid microbicidal activity, broad-spectrum activity, potency in saliva, low prospects for inducing resistance, and potent activity against antibiotic-resistant organisms (9).
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95% chromatographic homogeneity by reverse-phase high-performance liquid chromatography (HPLC) (Alliance-Waters). Purification and refolding of IB-367, which contains cysteine residues, were performed basically according to a procedure described by Harwig et al. (21) and repurified by HPLC as described above, and the ß-sheet content was confirmed by circular dichroism (CD). All purified peptides were subjected to electrospray mass spectrometry (Micromass ZQ; Waters) to confirm their composition and stored as a lyophilized powder at 20°C. Prior to being tested, fresh solutions were prepared in water (10 mM acetate buffer for IB-367), briefly vortexed, sonicated, centrifuged, and then diluted in the appropriate medium. Buffers were prepared with bidistilled water. Polymyxin B, rifampin, and piperacillin were obtained from Sigma. All other reagents were analytical grade. MICs. MICs presented in Table 1 were determined using microdilution susceptibility tests as described previously (38). Briefly, 100 µl peptide solution was mixed with 100 µl bacterial suspension (approximately 5 x 105 CFU/ml) in LB medium (0.5% yeast extract, 1% Bacto tryptone, 0.5% NaCl). Antibacterial activity was assessed after overnight incubation at 37°C against the following strains: Bacillus cereus (ATCC 11778), Staphylococcus aureus (ATCC 25923), Escherichia coli (ATCC 35218), and Pseudomonas aeruginosa (ATCC 9027). MICs against oral bacteria presented in Table 2 were determined using microdilution susceptibility tests against the following bacterial strains: Streptococcus mutans (ATCC 27351), Actinomyces viscosus (ATCC 43146), and Streptococcus salivarius (ATCC 25975). These bacteria were incubated in brain heart infusion (BHI) (Difco, Maryland) in an atmosphere enriched with 5% CO2 at 37°C. Actinobacillus actinomycetemcomitans (ATCC 29523) was incubated in 0.5% yeast extract, 1.5% Bacto tryptone, 0.75% D-glucose, 0.25% NaCl, 0.075% L-cysteine, 0.05% sodium thioglycolate, and 4% NaHCO3 in 5% CO2 at 37°C.
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TABLE 1. List of compounds investigated and their properties
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TABLE 2. MICs of S4(1-15) derivatives against oral bacteria
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Time-kill experiments. Bactericidal kinetics was assessed as described previously (50). Briefly, 100 µl of suspended bacteria at 2 x 106 to 4 x 106 CFU/ml of culture medium was added to a final volume of 1 ml culture medium containing 0 or 8 µM of each peptide. After 0, 5, 15, 30, 60, and 120 min of exposure to peptide, samples taken were subjected to serial 10-fold dilutions in 0.87% saline, from which 20-µl aliquots were plated on LB agar plates. The plates were incubated at 37°C for 24 h, and colonies were counted to determine bactericidal kinetics of the peptides. Fungicidal kinetics was assessed similarly, with the following exceptions. Thirty microliters of suspended clinically isolated Candida albicans CAF3-1 (15) at 4 x 105 CFU/ml was added to a final volume of 300 µl. Peptide concentration was 100 µM. Culture medium was yeast extract-peptone-dextrose (1% yeast extract, 2% Bacto peptone, 2% D-glucose, and 2% agarose for yeast extract-peptone-dextrose agar) supplemented with uridine at 50 mg/liter. Incubation temperature was 30°C.
CD spectra were recorded on a model
*-180 CDF spectrometer (Applied Photophysics), using a QS Hellma quartz cell of 2-mm path length at 25°C, between 190 and 250 nm at a scanning speed of 13.5 nm/min. The CD spectrum was scanned for peptide samples (100 µM) that were dissolved in PBS, in the presence or absence of 2 mM POPC:POPG (3:1) liposomes (where POPC is 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine and POPG is 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol; both provided by Sigma). Liposomes were prepared as described previously (42). Minor contributions of circular differential scattering were eliminated by subtracting the CD spectrum of buffer and liposomes without peptide. CD data represent average values from three separate recordings.
Microbicidal effect in saliva was determined as described previously (31). Briefly, fresh human saliva from healthy volunteers was mixed 1:1 with a dermaseptin analog (sterile water), IB-367 (10 mM sodium acetate buffer [pH 5]), or 10 mM sodium acetate buffer (pH 5) (negative control), and the mixture was incubated at 37°C without aeration. The numbers of viable CFU were determined after 0, 2, 8, and 16 min of exposure to peptide by subjecting culture samples to serial 10-fold dilution in 0.87% saline, from which 20-µl aliquots were plated on Trypticase soy agar plates (Biolife, Milan, Italy) containing 10% fetal bovine serum (Biological Industries, Israel). The plates were incubated at 37°C for 24 h, and the colonies were enumerated to determine the microbicidal effect of the drug. The same assay was also applied using LB agar plates for CFU determination. In this case, the culture exposed to IB-367 was sampled at 0, 5, and 15 min of incubation, as was the control group.
Biofilm assays. Bacteria (Streptococcus mutans and Actinomyces viscosus) from frozen cultures were incubated in BHI (Difco, Maryland) in an atmosphere enriched with 5% CO2 for 18 h in 37°C. Biofilms were generated by placing 10-µl aliquots of the above-described overnight culture in each well of an eight-well sterile microscopy chamber (ibidi, Munich, Germany) for an hour, after which an additional 300 µl BHI supplemented with 2% sucrose was added. After 18 h of incubation, the supernatant fluid was aspirated and the peptides, at a final concentration of 140 µg/ml, were added in BHI. After an additional incubation for 18 h at 37°C and 5% CO2, the supernatant fluid was aspirated. The biofilms were washed and stained with a Live:Dead BacLight bacterial viability kit (Molecular Probes, Inc., Oregon) under dark conditions, according to the manufacturer's instructions, and immediately analyzed using confocal laser scanning microscopy (Zeiss, Germany) at different biofilm depths. The Live:Dead BacLight kit consists of Syto 9 and propidium iodide (excitation/emission maxima are 480/530 nm and 520/580 nm, respectively), which stain viable bacteria in green and those with damaged membranes in red (11, 40).
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Whereas the reference peptide S4(1-15) displayed potent and broad-spectrum activity, loss of alanine in position 1 (Ala1) affected antibacterial potency in a mild but noticeable manner, whereby MICs increased by about twofold.
Substitution of various fatty acids for Ala1 resulted in a complex pattern of behavior without an apparent common denominator. Thus, substitutions with aminoheptanoyl (NC7) and aminododecanoyl (NC12) derivatives, which progressively increased the peptide's hydrophobicity (but not the charge), resulted in recovery of potency against B. cereus and P. aeruginosa and even improved potency against S. aureus as well as against E. coli (although to a lesser extent). A different outcome was observed with the corresponding nonaminated acyls, which further increased the hydrophobicity while reducing the charge. Substitution of a dodecanoyl derivative (C12) for Ala1 was rather deleterious to potency except against S. aureus, unlike the less hydrophobic derivative (C7), which rather enhanced potency except against E. coli.
Deletion of Leu2 further diminished potency, while substitution of the fatty acids for Leu2 resulted in a reminiscent pattern, as observed with substitution for Ala1. It is noteworthy, however, that this series uncovered two acyl derivatives, NC12-S4(3-15) and C7-S4(3-15), that, in addition to recovering potency, displayed enhanced potency by up to threefold against S. aureus and P. aeruginosa.
Deleting 3 or 4 residues from the peptide's N terminus led to inactivity in the tested concentrations (up to 50 µM). While some acyl derivatives succeeded in maintaining potency of the parent peptide, most did not lead to full recovery or enhance it, with the exception of the dodecanoyl (C12) derivative. Unlike its longer peptide analogs (14- and 13-mer peptides), whose dodecanoylation led to the least active compounds among the various acyls, the dodecanoylated 12-mer analog C12-S4(4-15) restored nearly all activities while the dodecanoylated 11-mer anlog C12-S4(5-15) was the most active among the acyl derivatives, displaying a MIC against S. aureus threefold lower than that of the 15-mer reference peptide.
Self-assembly. As aggregation of hydrophobic peptides (24) and lipopeptides (2, 38) can occur in aqueous solutions and affect their potency, the organizational properties (light scattering) of various acylated and nonacylated derivatives were compared in PBS. Figure 1 shows the outcome for representative peptides, the most hydrophobic compounds, the dodecanoylated derivatives. The outcome suggested that dodecanoyl conjugation to the reference peptide S4(1-15) led to self-assembly at a low micromolar concentration, but all of the dodecanoyl-substituted derivatives behaved as monomers at the relevant active concentrations.
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FIG. 1. Peptide self-assembly in PBS, as investigated by static light scattering measurements. Intensity of scattered light is plotted against total peptide concentrations. Plotted values represent the means ± standard deviations obtained from 10 measurements.
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Microbicidal kinetics in culture medium. The bactericidal properties of S4(1-15) and C7-S4(3-15) were compared with those of IB-367 at a concentration of 8 µM against a representative strain of P. aeruginosa (ATCC 9027). Panel A1 of Fig. 2 demonstrates that both dermaseptin derivatives have rapid bactericidal kinetics, although C7-S4(3-15) managed to reduce the CFU count by >5 log units within 15 min of incubation whereas S4(1-15) required a longer time (60 min). Under the same conditions, IB-367 initially displayed some bactericidal effect (for about 60 min), which eventually dissipated after a longer exposure time to bacteria.
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FIG. 2. Bactericidal kinetics in culture medium and in human saliva. (A) Bacterial suspensions of P. aeruginosa (panel A1) or C. albicans (panel A2) were added to culture medium containing 0, 8 µM (panel A1), or 100 µM (panel A2) peptide concentration. Bacteria were sampled at indicated times after exposure to peptide. (B) Bactericidal kinetics against polymicrobial flora in saliva. The final peptide concentration was 131.5 µM (panel B1) or 100 µM (panel B2). Samples taken at indicated time intervals were plated on Trypticase soy agar plates containing 10% fetal bovine serum (panel B1), on LB agar plates (panels A1 and B2), or on yeast extract-peptone-dextrose plates containing 50 mg/liter uridine (panel A2) for CFU counts after overnight incubation. Plotted values represent the means ± standard deviations obtained from at least two independent experiments performed in duplicate. Symbols: open circle, control; filled circle, IB-367; filled square, S4(1-15); filled triangle, C7-S4(3-15).
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Circular dichroism.
A global indication for structural differences was obtained using CD measurement in PBS in the presence of POPC:POPG liposomes. In PBS alone, all peptides had unordered structure (Fig. 3). In the presence of liposomes, S4(1-15) displayed an ellipticity profile typical of an
-helix, as characterized by double minima at 208 and 222 nm (Fig. 3A). The truncated derivative S4(3-15) displayed reduced helical content (Fig. 3B), which was restored (and further enhanced) with C7-S4(3-15) (Fig. 3C). Extent of helicity correlated with antibacterial potency, inasmuch as C7-S4(3-15) demonstrated the highest potency and helicity while S4(3-15) displayed the lowest potency and helicity.
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FIG. 3. Effect of truncation and substitution on peptide secondary structure. CD spectra were measured for peptide samples (100 µM) dissolved in PBS alone (dashed line) or containing POPC:POPG (3:1) (solid line). Plotted lines represent average values from three separate recordings. (A) S4(1-15), (B) S4(3-15), (C) C7-S4(3-15). , mean residue molar ellipticity; deg, degrees.
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Table 2 displays the peptide MICs determined against four additional bacteria that are highly associated with supragingival oral diseases (26). As both S. mutans and A. viscosus were sensitive to the derivatives C7-S4(3-15) and NC12-S4(3-15), antibacterial potency was further challenged under biofilm conditions.
Biofilm. C7-S4(3-15) and NC12-S4(3-15) were further subjected to additional testing to evaluate their effectiveness against oral biofilm, since this environment reflects in vivo conditions in the oral cavity (28). Figure 4 displays the peptide effect over immobilized S. mutans and A. viscosus, two facultative aerobic bacteria highly associated with dental caries. Since one of the unique characteristic of biofilms is a low diffusion rate of agents across the biofilm (43), we tested peptide exposure to immobilized bacteria (embedded in a biofilm) for 18 h to allow substantial diffusion of the peptide across the biofilm layers in order to assess the potential of these peptides to affect bacterial viability even at deep layers of the biofilm. As shown in Fig. 4, the red color observed throughout the entire depth of both biofilms (compared to control biofilms cultured in the absence of peptide) indicated that both C7-S4(3-15) and NC12-S4(3-15) demonstrated bactericidal effect reaching substantial biofilm depths.
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FIG. 4. Bactericidal effect over bacterial biofilm. Mature biofilms were incubated overnight in the presence of sucrose and 140 µg/ml ( 100 µM) peptide. Following incubation, samples were stained for live (green)/dead (red) bacteria and observed with confocal laser scanning microscopy, recording cross sections into the depth of the biofilm. Column 1, S. mutans; column 2, A. viscosus. Row a, treatment with C7-S4(3-15); row b, treatment with NC12-S4(3-15); row c, control treatment.
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-helical structure that was enhanced or reduced, respectively, for the more active or the less active derivatives. Helical structure was shown to stabilize amphipathic organization, conceivably via interaction of the acyl chain with the hydrophobic face of the helix, which in turn affects peptide interaction with the plasma membrane (42). Two additional observations were particularly intriguing. (i) Dodecanoyl substitutions led to a peculiar behavior in that they hampered potency at first [e.g., in C12S4(2-15)] but ended up enhancing potency [e.g., in C12S4(5-15)]. It is possible that the latter compound reached an optimal charge/hydrophobicity ratio. The concept that there is an optimal hydrophobicity window for potent activity is supported by various studies (22, 38, 53). Based on light scattering measurements, we excluded the possibility that self-assembly would account for the reduced potency of the dodecanoylated longer peptide analogs. (ii) The fact that the 11-mer dodecanoyl derivative was more potent than the 15-mer reference peptide suggests that dodecanoic acid might enable potency recovery after further reduction in the peptide length, eventually with longer fatty acids. Both of these issues remain unsolved in this study and warrant full additional investigation.
The two most potent derivatives issued from this study, C7- and NC12-S4(3-15), demonstrated bactericidal effect over biofilm growth of oral bacteria and therefore might be effective in treatment of oral disorders associated with bacterial biofilms. C7-S4(3-15) also displayed a fungicidal effect, as assessed with C. albicans. Moreover, C7-S4(3-15) was shown to have antimicrobial potency in saliva similar to that of IB-367, a peptide currently undergoing clinical trials for the treatment of oral mucositis. Incidentally, the observed differences (as shown in Fig. 2, panels B1 and B2) probably reflect medium-mediated selection of microbial populations, meaning that serum-containing medium encourages growth of certain bacterial strains which are not likely to develop in another medium and vice versa.
For successful treatment of oral mucositis, the preferred antimicrobial agent should include properties such as a broad-spectrum activity that is achieved despite a short contact time with the pathogen and the ability to remain uncompromised by saliva components. From these points of view, acylated dermaseptin derivatives such as C7-S4(3-15) and NC12-S4(3-15) have the potential to conform with the criteria while having other intrinsic advantages over the 17-mer nonlinear IB-367, namely, advantages pertaining to amino acid composition, which simply translate to production ease and cost. Acylation also endows peptides with resistance to proteolysis (38). As bacteria were previously shown to be unable to develop strains resistant to long or short dermaseptin S4 derivatives (32), the acylated derivatives presented here are likely to behave in a similar manner.
In conclusion, the data collectively support the concept that a strategy based on combined truncation and acylation may be useful in revealing improved derivatives of known antimicrobial peptides.
C. albicans strain CAF3-1 was kindly supplied by D. Kornitzer of the Ruth and Bruce Rappaport Faculty of Medicine, TechnionIsrael Institute of Technology, Israel.
Published ahead of print on 16 October 2006. ![]()
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-defensin-1 in anti-HIV-1 innate immunity. J. Clin. Investig. 115:765-773.[CrossRef][Medline]
-helical domain 1-18 of dermaseptin is responsible for antimicrobial activity. J. Biol. Chem. 269:1934-1939.
-defensin 4 inhibits HIV-1 infection in vitro. FEBS Lett. 579:162-166.[CrossRef][Medline]
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