Previous Article | Next Article ![]()
Antimicrobial Agents and Chemotherapy, February 2006, p. 702-708, Vol. 50, No. 2
0066-4804/06/$08.00+0 doi:10.1128/AAC.50.2.702-708.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Departamento de Biología Molecular (Unidad Asociada al Centro de Investigaciones Biológicas, C.S.I.C.), Facultad de Medicina, Universidad de Cantabria, 39011 Santander,1 Departamento de Sanidad Animal, Facultad de Veterinaria, Universidad de León, 24007 León, Spain,2 Department of Pathobiology, School of Public Health and Community Medicine, University of Washington, Seattle, Washington3
Received 11 April 2005/ Returned for modification 5 July 2005/ Accepted 9 November 2005
| ABSTRACT |
|---|
|
|
|---|
| INTRODUCTION |
|---|
|
|
|---|
Tetracyclines are often used for therapy of this disease (2). Tetracyclines belong to a family of broad-spectrum antibiotics that include tetracycline, doxycycline, and other semisynthetic derivatives (4). Tetracyclines have been widely used in veterinary medicine for prophylaxis and growth promotion in food animals. Numerous studies have described the effects of long-term usage of subtherapeutic doses of tetracyclines, which include increased levels of resistant gut bacteria or pathogens (24). The use of antibiotics as growth promoters has been discouraged by the European Union (Council Directive 70/524 EEC, 1977); however, consumption figures suggest that the use of tetracyclines in veterinary practice is still high compared with use of other classes of antibiotics (30).
Several studies have reported the high incidence of tetracycline resistance (Tcr) in A. pleuropneumoniae. Forty-two of the 71 (59.2%) isolates collected in Spain in the period 1992 to 1993 were resistant to oxytetracycline (11), whereas 55 of 60 (90%) A. pleuropneumoniae strains isolated from pigs in Taiwan during 1985 to 1993 showed tetracycline resistance (3). Previous work identified the tet(B) gene in 8 of the 17 (47%) Tcr A. pleuropneumoniae isolates collected in Norway between 1986 and 1992 (34). However, the data of that study suggested that other tet genes may be present in these isolates.
The aim of the present study was to determine the type and genomic location of tet genes carried in a collection of Spanish Tcr A. pleuropneumoniae isolates recovered from different farms of the "Castilla-León" region between 1997 and 2001.
| MATERIALS AND METHODS |
|---|
|
|
|---|
Growth of Escherichia coli strains.
Escherichia coli S17-1 (31), DH5
(28), and IT1022 (9) were grown on Luria-Bertani (LB) agar (Pronadisa S.A., Madrid, Spain) supplemented with the appropriate antibiotics (300 µg of streptomycin/ml, 20 µg of nalidixic acid/ml, or 10 µg of tetracycline/ml).
Antimicrobial susceptibility testing. Bacteria were grown overnight on chocolate agar plates and resuspended in sterilized saline solution, and the turbidity was adjusted to a 0.5 McFarland standard. The MICs of tetracycline and doxycycline were determined by broth microdilution assays in accordance with CLSI (formerly NCCLS) guidelines (23) in veterinary fastidious medium supplemented with 0.025% NAD (Sigma-Aldrich Química, Madrid, Spain). The microplates (Sensititre VAV5; Trek Diagnostic Systems, England) were incubated at 37°C for 24 h, and the MIC of each antimicrobial agent was the lowest concentration that inhibited visible growth. A. pleuropneumoniae ATCC 27090 (serovar 3) was included in the study as a quality control.
Extraction of DNA. Genomic DNA was obtained as previously described (6, 29). Plasmid DNA was prepared from 100 ml broth culture using a Midi plasmid preparation and purification kit (QIAGEN S.A., Courtaboeuf, France).
DNA-DNA hybridization. Whole-cell bacterial dot blots were prepared, and DNA-DNA hybridization was performed as previously described with 32P-labeled probes (19) or with chemiluminescently labeled probes by using the CDP-Star system according to the manufacturer's instructions (Roche Diagnostics, S.L., Barcelona, Spain). tet genestet(A), tet(B), tet(C), tet(D), tet(E), tet(G), tet(H), tet(K), tet(L), tet(M), tet(O), tet(S), tet(Y), and tet(29)were detected by DNA-DNA dot blot hybridization and/or PCR assays as previously described (21). Positive and negative controls were included in each assay. To determinate the location of tet genes, Southern blotting of uncut genomic and plasmid DNA was performed according to reference 28.
PCR detection of tet genes. The presence of the various tet genes was confirmed using PCR assays with primers specific for each gene and by sequencing of the PCR products. The sequences of the primers and their annealing temperatures have been described previously and are available upon request (see the supplemental material). The PCR mixture consisted of 10 µl of DNA template (10 pg/µl), 4 U of Taq DNA polymerase (Bioline, London, United Kingdom), 1.5 mM MgCl2, 10 µl of 10x PCR amplification buffer [160 mM (NH4)2SO4, 670 mM Tris-HCl (pH 8.8), 0.1% Tween 20], 40 pmol of each primer, 0.2 mM each deoxynucleoside triphosphate (Bioline, London, United Kingdom), and double-distilled water to a final volume of 100 µl. DNA was first denatured at 95°C for 5 min and then subjected to 30 cycles of amplification under the following conditions: denaturation at 95°C for 1 min, annealing for 1 min, and extension at 72°C for 1 min. After the final cycle, the reactions were terminated by an extra run at 72°C for 10 min, and the reaction products were then kept at 4°C until analysis.
Electrotransformation.
Competent E. coli S17-1 cells were prepared as previously described (28) and electroporated with 100 ng of A. pleuropneumoniae plasmid DNA. Electrotransformation was performed in a Gene Pulser II electroporation system (Bio-Rad, Foster City, CA) by applying an electric pulse as described by the manufacturer (2.5 kV, 25 µFa, 800
) (8). Transformants were selected on LB agar supplemented with tetracycline (10 µg/ml) and streptomycin (300 µg/ml).
Mobilization experiments.
Conjugal transfer of the tetracycline resistance phenotype was assayed by mating A. pleuropneumoniae isolates carrying the various plasmids to an E. coli S17-1 recipient. A. pleuropneumoniae isolates APP11745 [tet(B)], APP13142 [tet(O)], APP9956 [tet(H)], and APP9555 [tet(L)], or E. coli S17-1 transformants carrying the Tcr plasmid p9555, were used as donors, and E. coli DH5
was used as the recipient. The bacteria were grown at 37°C overnight and mixed in a donor-to-recipient ratio of 1:8. The resultant suspension was then placed on a 0.45-µm HA membrane (Millipore) and incubated at 37°C overnight. Transconjugants were selected on LB agar plates containing 10 µg of tetracycline and 20 µg of nalidixic acid (Nx) per ml. Tcr Nxr colonies were tested for streptomycin resistance in order to confirm that they were true transconjugants. Transfer frequency was expressed as the number of transconjugants per recipient cell obtained after plating on selective medium.
DNA sequencing and analyses. Plasmids p11745 and p9555 were amplified using primers tetBoutF (AAA GAG TCA TCA GCA AGG TGC T)-tetBoutR (TAT GCG GTG AAA TCT CTC CTG C) and tetLoutF (TTA CTT GAT CAA AGG TTG TT)-tetLoutR (AAT CAT TTG CAA TAT CAG GT), respectively, which are complementary to the tet(B) and the tet(L) gene, respectively. The PCR amplicons were sequenced by following a primer-walking strategy at the "Servicio de Secuenciación de DNA HUMVUnican" of the "Universidad de Cantabria" using a Beckman CEQ 2000XL apparatus. Contiguous sequences were assembled using the ContigExpress Vector NTI Suite 5.5 (Informax, Bethesda, Md.). Homology searches were performed with BLAST and ORF Finder tools at the website of the National Center for Biotechnology Information (Bethesda, MD).
Nucleotide sequence accession numbers. The complete sequences of plasmids p11745 and p9555, which contain the tet(B) and tet(L) genes, respectively, have been deposited in GenBank under accession no. DQ176855 and AY359464. The sequences of the tet regions of the A. pleuropneumoniae isolates have been deposited in GenBank under accession no. AY987963 for tet(O) and AY987962 for tet(H).
| RESULTS |
|---|
|
|
|---|
Distribution of the tet genes. Of the 46 Tcr A. pleuropneumoniae isolates tested, 44 (96%) carried one of the tet genes tested. These included 32 (70%) isolates carrying the tet(B) gene, 8 (17%) isolates carrying the tet(O) gene, and 2 isolates each (4% each) carrying the tet(H) or the tet(L) gene (Table 1). None of the 44 isolates carried more than one tet gene (Table 1).Two Tcr isolates, as well as A. pleuropneumoniae ATCC 27090, did not carry any of the 14 tet genes examined.
|
The plasmid size (5.5 kb) and indistinguishable restriction patterns with the HindIII and DraI endonucleases indicated that the 30 tet(B)-positive plasmids were closely related, if not identical. Plasmid p11745, from isolate APP11745, was selected and completely sequenced. This plasmid consisted of 5,486 bp and had a G+C content of 38.1%. The plasmid had four open reading frames (ORFs), with orf3 containing the 1,209-bp structural gene tet(B), which had 99% sequence identity at the DNA and amino acid levels with the tet(B) gene from Tn10 (GenBank accession no. AF162223). The tet(B) gene usually has a regulator gene, tetR(B), immediately upstream of the structural tet(B) gene; the two genes share a common promoter and are read in opposite directions (25). However, the tetR(B) gene was not present in plasmid p11745 (Fig. 1). A PCR assay for the tetR(B) gene gave a PCR product of the correct size for the control, but the tet(B)-positive A. pleuropneumoniae isolate did not produce a PCR product from the assay, nor was the sequence found on the plasmid. The 21 bp upstream of the tet(B) gene was identical to that found in Tn10 and included the putative ribosome binding site (RBS) sequence (AGAGAA) 7 bp upstream of the tet(B) gene. Beyond this sequence, 35 (TAAAAT) and 10 (TAAAAT) boxes resembling A. pleuropneumoniae consensus promoter sequences (7) were found. A putative Rho-independent transcription terminator located 35 bp downstream from the translational stop codon of the tet(B) gene was also identified. In the downstream region there was a 75-bp stretch showing identity with pPAT2 (Fig. 1).
|
|
Characterization of the tet(H) genes. The tet(H) genes were located on a 5.6-kb plasmid (p9956) (isolate APP9956) and a >12-kb plasmid (p12494) (isolate APP12494). One-kilobase PCR amplicons from these plasmids were sequenced, and their DNA and amino acid sequences were 100% identical to those of the tet(H) gene from the Pasteurella plasmid pPAT1 (GenBank accession no. AJ245947) (14). The tet(H) structural gene and the tetR(H) repressor gene were identified in a 1,179-bp region by partial sequencing (3 kb) of plasmid p9956. These gene sequences were identical to the tet(H) gene from plasmid pPAT1 but were 24 bp shorter than the complete tet(H) gene (12). This deletion produced a truncated structural tet protein that was missing the last 8 residues in the C terminus. The deleted protein is functional, since the tetracycline MIC was 32 µg/ml for isolate APP9956, and it is also functional in plasmid pPAT1 (14). The tetR(H) gene was 624 bp long, and its DNA and amino acid sequences were 100% identical with those of the tetR(H) gene from Pasteurella plasmids (14).
Characterization of the tet(L) genes. Two isolates (APP9555 and APP13213) carried the tet(L) genes, which were located on plasmids, p9555 and p13123, of 5.6 and >12 kb, respectively. The 0.9-kb amplicons were sequenced and were 100% identical at the DNA and amino acid levels to the tet(L) gene from Bacillus subtilis (GenBank accession no. AY129652). Plasmid p9555 was completely sequenced and consisted of 5,672 bp with a G+C content of 39.4%. The plasmid had five ORFs with significant homology to proteins of known function (Fig. 2; Table 3). orf2 was the tet(L) structural gene and consisted of 1,356 bp which had 99% identity at the DNA and amino acid levels to other plasmid-borne tet(L) genes, including the Mannheimia plasmid pCCK3259 (EMBL database accession no. AJ966516) (17) and the Bacillus cereus plasmid pJHI (GenBank accession no. AY129652). The tet(L) gene in plasmid p9555 is preceded by a RBS sequence (AGAAGG) at positions 417 to 422 but lacks the translational attenuator which is found upstream in other tet(L) gene sequences along with the promoter sequence (Fig. 2). The intergenic region between orf1 and the tet(L) gene does not present significant homologies with DNA sequences registered in databases. However, 35 (TTAGCT) and 10 (TTTAAT) regions resembling A. pleuropneumoniae consensus promoter sequences at positions 3109 to 3114 and 3140 to 3145 are potential promoters for tet(L) gene expression (7). A putative Rho-independent transcription terminator was found 9 bp downstream of the translational stop codon. This terminator is very similar to that previously found in all tet(L) genes of gram-positive bacteria (GenBank accession no. AY129652).
|
|
Two regions were identified in plasmid p9555. The first region consists of the tet(L) gene and has a G+C content of 35%. The second contains the mob genes (mobC, mobA, and mobB), with a G+C content of 40 to 45%, and is indistinguishable from the recently described Mannheimia plasmid pCCK3259 (17) with the exception of an additional 363-bp region that is absent in pCCK3259 (Fig. 2). This 363-bp region is flanked by 10-bp direct repeats which could possibly be easily deleted. The mob region of plasmid p9555 is highly homologous (>90%) to the mob region of the H. parasuis plasmid pHS-Tet (Fig. 2).
Transfer of A. pleuropneumoniae plasmids. The tet(B)-, tet(H)-, and tet(L)-positive plasmids were electroporated into E. coli S17-1, and Tcr transformants were shown to carry the different tetracycline resistance plasmids, indicating that these plasmids replicate and that their associated tet genes are expressed in E. coli. In contrast, no Tcr transformants occurred when plasmids from isolates carrying the tet(O) gene were electroporated into E. coli S17-1.
Mobilization of plasmids p11745, p13142, p9956, and p9555 from their original A. pleuropneumoniae isolates into E. coli S17-1 was examined, but no transconjugants were obtained. However, analysis of the plasmid p9555 sequence revealed the existence of a mob operon encoding MobA, a relaxase belonging to the ColE1 superfamily of relaxases (10), suggesting that p9555 is mobilizable. Plasmids encoding relaxases of this family can be mobilized with the assistance of IncP plasmid conjugation machinery. Mobilization of p9555 was assayed from E. coli S17-1, which carried a derivative of the conjugative RP4 plasmid integrated into the chromosome, to the E. coli DH5
recipient, and Tcr colonies were obtained at a frequency of 103 per recipient. The PCR assay with tet(L)-specific primers determined that all 10 Tcr transconjugants carried p9555, confirming the transfer of p9555 from E. coli S17-1 to E. coli DH5
.
| DISCUSSION |
|---|
|
|
|---|
Among the 46 Tcr A. pleuropneumoniae isolates analyzed, 32 (70%) carried tet(B). The tet(B) gene is widespread among gram-negative bacteria; it has been found in 24 other genera (http://faculty.washington.edu/marilynr/) and is the only tet gene previously identified in the A. pleuropneumoniae literature (34). However, unlike most tet(B)-containing bacteria, none of the tet(B)-positive A. pleuropneumoniae isolates appeared to carry a tetR(B) gene on the small 5-kb nonmobilizable plasmid. Similar findings have been reported for a Neisseria meningitidis isolate recovered from Japan (32), three strains of Haemophilus parainfluenzae (13), and an H. parasuis 5.1-kb plasmid carrying tet(B) (GenBank accession no. NC006828) (18). All the 5-kb nonmobilizable tet(B) plasmids had identical restriction patterns, suggesting that they were highly related or identical to each other. The RBS and transcription terminator sequences of the tet(B) gene are conserved in A. pleuropneumoniae tet(B) plasmids, whereas the original promoter was not found. Instead, upstream of the tet(B) gene there were two sequences that resemble A. pleuropneumoniae promoters (Fig. 1). Therefore, the absence of tetR(B) and sequence features of the tet(B) upstream region suggest that the promoter and transcriptional regulatory signals have been adapted for expression in A. pleuropneumoniae.
Sequence analysis of tet(B)-positive p11745 indicated that this plasmid codes for RepB, a replication-related protein homologous to a family of proteins involved in initiation of plasmid replication and widespread in plasmids of both gram-negative and gram-positive bacteria. Plasmid p11745 was transformed into both E. coli and H. parasuis (unpublished results). The development of plasmid vectors based on the p11745 replication region for use in Pasteurellaceae is currently in progress in our laboratory.
Plasmid p9956 carried the gram-negative tet(H) gene, which has previously been found as part of the small composite transposon Tn5706 on plasmids or in the chromosome of Pasteurella, Mannheimia spp., Acinetobacter radioresistens, and Moraxella spp. (15, 16, 21). The tet regions of p9956 and the Pasteurella plasmid pPAT1 (14) are identical and, in contrast to tet(B) plasmids, include the regulator gene tetR(H) and a truncated copy of tet(H) which is functional in both A. pleuropneumoniae and E. coli.
Sequence analysis of p9555 suggests that this plasmid was built by insertion of a region of gram-positive origin containing tet(L) into a Pasteurellaceae plasmid. The p9555 tet(L) was homologous to previously sequenced tet(L) genes found in plasmids of several low-GC-content gram-positive bacteria. The upstream region of tet(L) lacks the regulatory sequences characteristic of gram-positive tet(L) determinants but contains two 6-bp boxes resembling the A. pleuropneumoniae consensus promoter. However, the translational terminator downstream of tet(L) is conserved. Thus, as in the case of tet(B) of p11745, sequences upstream of tet(L) seem to be suited for its expression in A. pleuropneumoniae. The tet(L) gene has been found in other gram-negative bacteria such as Salmonella, Morganella, Fusobacterium, and Veillonella spp. (http://faculty.washington.edu/marilynr/). The presence of a mob operon including a ColE1 superfamily relaxase indicated that p9555 can be mobilized in E. coli if transfer functions from a conjugative IncP plasmid are provided. Mobilization of the plasmids in the E. coli strains using a donor-containing plasmid, RP4, demonstrated that p9555 Mob proteins are functional. This plasmid could have been transmitted to A. pleuropneumoniae from other bacteria inhabiting the respiratory tracts of pigs and encoding the appropriate transfer machinery for assisted mobilization.
The tet(L)-carrying plasmids identified in bovine Mannheimia and Pasteurella isolates were virtually identical to p9555 (more than 99% homologous) except in a 363-bp region absent in pCCK3259, suggesting that plasmid pCCK3259 might be a deleted derivative of p9555 (17). Supporting this hypothesis are the dates of isolation of the A. pleuropneumoniae strain in 1998 and the Mannheimia isolates in 2003 (17), with plasmid pCCK3259 created from the parental plasmid p9555 by a 363-bp deletion mediated by the 10-bp repeats flanking the 363-bp stretch. The distinct geographical origins of bacteria carrying p9555 and pCCK3259 could reflect the fact that movement of pigs between different European countries is a common practice for pig breeding in Europe.
The two A. pleuropneumoniae Tcr plasmids sequenced in this study, p11745 and p9555, encoded mobilization-related proteins. The recent finding of a plasmid carrying a tet(B) gene and a mob region in an isolate of H. parasuis (18), another respiratory swine pathogen, suggests that mobilizable plasmids are vehicles for active DNA exchange among bacteria inhabiting the upper respiratory tracts of pigs, contributing to the spread of resistance genes.
Our data suggest that the number of different tet genes in A. pleuropneumoniae has expanded. What impact this might have on therapy of this disease is not clear, but continued monitoring of this important animal pathogen is warranted.
| ACKNOWLEDGMENTS |
|---|
This work was supported by a grant from the Spanish Ministry for Science and Technology (AGL2002-04585). M. Blanco was a recipient of fellowships from the University of León and the University of Cantabria.
| FOOTNOTES |
|---|
Supplemental material for this article may be found at http://aac.asm.org/. ![]()
| REFERENCES |
|---|
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Clin. Vaccine Immunol. | Clin. Microbiol. Rev. |
|---|---|
| J. Clin. Microbiol. | ALL ASM JOURNALS |