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Antimicrobial Agents and Chemotherapy, March 2006, p. 880-886, Vol. 50, No. 3
0066-4804/06/$08.00+0 doi:10.1128/AAC.50.3.880-886.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
gorzata Fleischer,2
Zuzanna Drulis-Kawa,3
ukasz Naumiuk,4
Alfred Samet,4
Waleria Hryniewicz,1 and
Marek Gniadkowski1*
National Institute of Public Health, 00-725 Warsaw, Poland,1
Department of Microbiology, Medical University in Wroc
aw, 50-368 Wroc
aw, Poland,2
Institute of Microbiology, Wroc
aw University, 51-148 Wroc
aw, Poland,3
Department of Clinical Microbiology, Public Hospital No. 1, 80-211 Gda
sk, Poland4
Received 29 September 2005/ Returned for modification 5 November 2005/ Accepted 3 January 2006
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The first report on MBL-producing bacteria in Poland appeared in 2003 and concerned a single P. aeruginosa isolate identified within the SENTRY surveillance project. It was recovered in 2001 in a hospital in Zabrze and carried the blaVIM-2 gene located in a unique class 1 integron together with the aminoglycoside resistance gene aacA4 (33). The next report described a group of P. aeruginosa isolates from a large pediatric center in Warsaw, identified in 1998 to 2001. They all carried another class 1 integron, with aacA4 and blaVIM-4 gene cassettes, which was very similar to a blaVIM-1-containing integron from Greece (20). In this study, we have analyzed a wider group of MBL-producing isolates from numerous Polish hospitals.
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aw (WRII) were distinguished by the retrospective analysis of the collection of bacterial isolates maintained in this center. Groups of more than 1 isolate were identified in six hospitals, including WRII (10 isolates) and centers in Gda
sk (GD; six isolates) and Zabrze (ZA; six isolates). The isolates were recovered from a variety of clinical specimens, mostly urine (n = 13), sputum (n = 10), and blood (n = 6). Taxonomic identification was performed using the ATB ID32GN test (bioMérieux, Charbonnieres-les-Bains, France), and, in the case of the Acinetobacter isolate, it was supplemented by the genetic ARDRA analysis (32). |
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TABLE 1. Clinical isolates, their origins, time of identification, PFGE, identification of blaVIM genes and their location, PCR-RFLP of blaVIM-containing class 1 integrons, and integron gene cassette arrays
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FIG. 1. Map of Poland with the regions in which the MBL-producing isolates were identified. Small black circles with center designations indicate the cities: GD, Gda sk; BG I,II, Bydgoszcz; PL, P ock; WA I,II,III, Warsaw; KR, Cracow; KA, Katowice; CH, Chorzów; ZA, Zabrze; BB, Bielsko-Bia a; WR I,II,III, Wroc aw; JG, Jelenia Góra; PO, Pozna . Ellipses show the areas of the occurrence of the specific groups of organisms or clones with particular blaVIM gene-containing integron variants. Pae, P. aeruginosa; Ag3, Acinetobacter genospecies 3; Ppu, Pseudomonas putida. Capital letters indicate P. aeruginosa PFGE types, and lowercase letters indicate integron variants.
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MBL detection. The screening for MBL production was carried out with Etest MBL strips (AB Biodisk, Solna, Sweden) and by two variants of the synergy disk test, with EDTA and 2-mercaptopropionic acid as MBL inhibitors (1). Additionally, MBL detection was confirmed by the assay for imipenem hydrolytic activity in bacterial sonicates, as described by Cardoso et al. (4), in a Power Wave X spectrophotometer (Bio-Tek Instruments, Winooski, VT).
Antimicrobial susceptibility testing. MICs of various antimicrobials were evaluated by the agar dilution method, according to the Clinical and Laboratory Standards Institute (CLSI [formerly NCCLS]) recommendations (5). In ß-lactam-inhibitor combinations, the constant concentrations of clavulanate and tazobactam were 2 and 4 µg/ml, respectively. P. aeruginosa ATCC 27853, Escherichia coli ATCC 25922, and E. coli ATCC 35218 were used as reference strains.
PFGE typing. The pulsed-field gel electrophoresis (PFGE) analysis was performed as described by Grundmann et al. (10), using the XbaI restriction enzyme (MBI Fermentas, Vilnius, Lithuania) and a contour-clamped homogeneous electric field DRIII PFGE system (Bio-Rad, Hercules, Calif.). The PFGE results were interpreted according to Tenover et al. (29).
PCR detection and identification of blaVIM-type genes.
Total bacterial DNAs were purified with the Genomic DNA Prep Plus kit (A & A Biotechnology, Gda
sk, Poland) and screened by PCR for the presence of genes coding for VIM-type ß-lactamases (blaVIM genes). Two pairs of primers were used (Table 2). Primers VIM-1L and VIM-1R were specific for blaVIM-1-related genes (blaVIM-1, blaVIM-4, blaVIM-5, and blaVIM-11a), whereas primers VIM-2L and VIM-2R were designed to amplify blaVIM-2-related genes (blaVIM-2, blaVIM-3, blaVIM-6, blaVIM-8, blaVIM-9, blaVIM-10, and blaVIM-11b) (34). The PCR conditions used were those described previously (8).
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TABLE 2. PCR primers used in analysis of the blaVIM genes and other sequences
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PCR detection of integrons. The PCR detection of class 1 integrons was performed with primers INT1F and INT1R specific for the intI1 gene (Table 2) (12).
PCR-RFLP analysis and sequencing of integronic variable regions.
Variable regions of class 1 integrons containing the blaVIM gene cassettes were studied by the PCR-restriction fragment length polymorphism (RFLP) approach. The regions were amplified in two parts, 5' and 3', with primers specific for blaVIM genes and integronic conserved segments (5'-CS or 3'-CS) in each pair (Table 2) (15). The 5' parts of the all regions were amplified with primers 5CS and VIM178C, whereas the 3' parts were amplified with primers VIM-1L or VIM-2L (for blaVIM-4- or blaVIM-2-containing regions, respectively) and primer 3CS. In the case of the P. aeruginosa isolates from centers in Wroc
aw, Jelenia Góra, and Pozna
, the reverse primer used was INT/3CS (specific for the qacE
1 gene) (25). The resulting amplicons were digested with the MboI restriction endonuclease (MBI Fermentas) and electrophoresed in 2% agarose gels (NuSieve 3:1; Cambrex Bio Science, Rockland, ME).
Sequencing of the 5' and 3' parts of the integronic variable regions was started with primers used for amplification of these fragments and continued with consecutive primers designed according to the gradually accumulated sequence data.
Studies of the location of the blaVIM-containing integrons.
Undigested total DNAs of the isolates were electrophoresed by PFGE, blotted onto a Hybond-N+ membrane (Amersham Pharmacia Biotech, Little Chalfont, United Kingdom), and hybridized with a probe specific for blaVIM genes. The probe was the
0.8-kb PCR product, obtained with primers VIM-2L and VIM-2R and total DNA of isolate P. aeruginosa 188 (blaVIM-2) as a template. Following exposure, the probe was washed out from the membrane, which was then rehybridized with the 16S-23S rRNA gene probe, obtained in a PCR as previously described (8). Probe labeling, hybridization, and signal detection were performed with the ECL Random-Prime Labeling and Detection system (Amersham Pharmacia Biotech).
The imipenem resistance conjugal transfer was carried out by the filter-mating procedure (28), with P. aeruginosa PAO1161 (leu r) (2) resistant to rifampin as a recipient. Transconjugants were selected on Trypticase soy agar (Oxoid, Basingstoke, United Kingdom) plates supplemented with rifampin (300 µg/ml; Polfa Tarchomin, Warsaw, Poland) and imipenem (8 µg/ml; Merck Sharp & Dohme, Rahway, N.J.).
Sequence data analysis. All sequence data determined in this work were analyzed with the use of the Lasergene Version 6 software (DNASTAR, Madison, WI).
Nucleotide sequence accession numbers. The nucleotide sequences of the integronic variable regions determined in this work will appear in the EMBL database under the following accession numbers: AM087404 for the isolate P. aeruginosa 188, AM087405 for P. aeruginosa 804, AM087406 for P. aeruginosa 1262, AM087407 for P. aeruginosa 1885, AM087408 for P. aeruginosa 1956, AM087409 for P. aeruginosa 1266, AM087410 for P. aeruginosa 1264, and AM087411 for P. aeruginosa 2611.
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PFGE typing. The 38 P. aeruginosa isolates were typed by PFGE. Eight different PFGE types, designated from A to H, were distinguished among the isolates (Table 1). Five of the types, A, B, C, D, and F, characterized more than one isolate, and all groups of several isolates from a single center were classified into a single PFGE type. Isolates of PFGE types A, B, and C were identified in several centers each, including hospitals in different cities, which, however, were always located close to each other, usually in specific geographic regions (Fig. 1). The PFGE types B and C were split further into four subtypes each.
Identification of blaVIM genes.
All of the study isolates were found to be positive in PCRs for the presence of blaVIM genes. Four P. aeruginosa isolates of the PFGE subtype B4 from Gda
sk and a unique P. aeruginosa isolate from Katowice (PFGE type E) produced amplicons of the expected size with primers specific for the blaVIM-1-related genes. For all of the remaining isolates, the amplicons were yielded by PCR specific for blaVIM-2-related genes. DNA sequencing, carried out for isolates representing all PFGE types and subtypes, revealed that the amplicons were consistent with either blaVIM-4 or blaVIM-2 genes, respectively.
Detection of integrons. PCR specific for the integrase gene intI1 revealed the presence of class 1 integrons in all study isolates. Positive PCR results with the forward primer INT1F and reverse primer VIM-1R or VIM-2R indicated that the blaVIM-4 and blaVIM-2 genes resided inside this type of element (results not shown).
PCR-RFLP of the variable regions of the blaVIM-containing integrons. The PCR-RFLP analysis of the variable regions of the blaVIM-containing class 1 integrons was performed for all study isolates. It revealed the presence of eight different MboI restriction patterns of the amplified DNA, which corresponded to eight variants of the integronic gene cassette arrays (variants a to h). In general, the distribution of the integron polymorphs correlated well with the P. aeruginosa PFGE types and/or the geographic origins of all isolates (Table 1 and Fig. 1).
Structure of the cassette arrays with blaVIM genes. Eight isolates representing all of the integron polymorphs identified were selected for sequencing the entire variable regions (Table 1). The array structures comprised from one to four gene cassettes, and the genes with known functions besides blaVIM-2 or blaVIM-4 were exclusively those coding for aminoglycoside-modifying enzymes. Only polymorph h from P. aeruginosa from Cracow (isolate 1885) consisted of a sole blaVIM gene cassette, blaVIM-2, and over the entire sequenced fragment, it was identical to the integron In56 from P. aeruginosa COL-1 from France (22). The same blaVIM-2 cassette was also found in polymorphs b and c from the isolates from the East Pomerania region and in variant f from Mazovia (Fig. 1). Gene cassette arrays b and c (isolates 1262 and 1266, respectively) differed from each other only by the presence of the aacC1 cassette between blaVIM-2 and aphA15 in polymorph c. The aacC1 gene demonstrated five mutations (one amino acid substitution, Glu142Asp) when compared to aacC1 in the blaVIM-2-containing integron In58 from P. aeruginosa RON-1 from France (21). On the other hand, the aphA15 gene cassette, present both in variants b and c, was identical to that often observed in blaVIM-1- containing integrons in Italy (13, 26, 30). In the integron polymorph f (isolate 804), the blaVIM-2 cassette was accompanied by aadB, identical to that described in In34 (19) and a fused gene, aadA6/aadA10. Its 806-bp-long aadA6 part was almost identical to that from a blaVIM-4-containing integron from Greece (GenBank accession no. AY460181), whereas the 19-bp-long 3' end fully matched the aadA10 sequence from the integron in plasmid R388-R151 (18).
Sequencing of the a-type polymorph from P. aeruginosa 1956 from Zabrze (the Upper Silesia region) confirmed the structure obtained earlier by Walsh et al. for isolate 2751. blaVIM-2 was followed by the aacA4 gene cassette in this integron, and the 59-base element (59-be) of blaVIM-2 was unusually short (19 bp) (33). The aacA4 cassette was identical to that identified in In58 (21), and the two integrons might have been related to each other (33). Polymorph e from the isolates from Lower Silesia/Great Poland (isolate 188) contained the same genes but in the opposite configuration. The blaVIM-2 cassette was unique by the fact that its 59-be was almost completely deleted and the qacE
1 gene directly followed the inverse core site. aacA4 was identical to those in In58 (21) and polymorph a. The same composition of gene cassettes was identified in In72 from a P. aeruginosa isolate from Italy (17); however, four point mutations in aacA4 and the 59-be deletion in blaVIM-2 rather excluded the close relatedness between polymorph e and In72.
Similarly to all but one of the blaVIM-2-containing integrons, the two variants with blaVIM-4 were found to be of unique cassette compositions. The blaVIM-4 cassettes were identical to each other and to that originally described by Pournaras et al. (24). The aacA4 gene cassette which followed blaVIM-4 in polymorph d from the isolates from East Pomerania (isolate 1264) was specific and contained a single mutation (amino acid substitution Asp164Val) compared to those in variants a and e and in In58 (21). Polymorph g from a single P. aeruginosa isolate (isolate 2611) from Katowice (Upper Silesia) possessed aacA7, aadA6, and orfD cassettes behind blaVIM-4. It differed from the integron identified in Greece only by the presence of aacA7 (GenBank accession no. AY460181).
Location of the blaVIM gene-containing integrons. The undigested total DNA of the isolates was separated by PFGE and hybridized separately with the blaVIM and rRNA gene probes. Each isolate was characterized by a DNA band of the same migration and the highest molecular weight (MW) observed which hybridized with the rRNA gene probe and most probably represented the chromosomal DNA. Some isolates produced additional DNA bands of faster migration, and these could correspond to plasmid molecules of highly diverse MWs. In the case of the Acinetobacter isolate from Upper Silesia (integron variant a) and all of the P. aeruginosa and P. putida isolates from Mazovia (integron variant f), the blaVIM probe hybridized only to the bands of faster electrophoretic migration. For all of the remaining isolates, the signal was detected at the putative chromosomal band (results not shown).
The representative isolates of Acinetobacter (isolate 446), P. aeruginosa (isolates 900, 1381, and 2248), and P. putida (isolate 2596) with the probable plasmidic location of the blaVIM-2-containing integrons were subjected to the imipenem resistance transfer experiment. Transconjugants with the MBL-positive phenotype were produced by the Mazovian isolates P. aeruginosa 900 and 1381 and P. putida 2596, all of which carried integron variant f.
Antimicrobial susceptibility. The MIC patterns that characterized the study isolates were similar to those usually observed for MBL producers (16, 34, 37) (Table 3). In general, the MICs of penicillins, cephalosporins, and carbapenems were significantly increased. Almost all of the isolates were resistant to gentamicin and nonsusceptible to tobramycin and ciprofloxacin.
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TABLE 3. Antimicrobial susceptibility of MBL-producing clinical isolates
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anowska, and T. R. Walsh, Abstr. 15th Eur. Congr. Clin. Microbiol. Infect. Dis., abstr. P412, 2005; Clin. Microbiol. Infect. 11(Suppl. 2):100, 2005], even if sporadic in the majority of cases, indicated clearly that MBLs have started to constitute a countrywide problem. (Only three of the hospitals from which the study isolates were derived participated in the P. aeruginosa surveys mentioned above). Both the PFGE typing of the study P. aeruginosa isolates and the analysis of the variable regions of blaVIM-containing integrons revealed their specific geographic distribution, which indicated that MBL-mediated resistance determinants had emerged several times in separate areas of Poland. Of the eight different polymorphs of the integronic gene cassette arrays, two variants were most likely related to each other (b and c in P. aeruginosa in East Pomerania); therefore, the emergence of the whole set should be assigned to at least seven independent selection events in five regions. If the data collected by others (20; Patzer et al., 15th Eur. Congr. Clin. Microbiol. Infect. Dis.) are also considered, the number of such selection events in Poland may have exceeded the number of 10. The comparison of the gene cassette sequences and configurations with those observed in other countries suggested that most of these integrons were assembled in Poland from existing bacterial populations as opposed to being imported from foreign environments. The probable exception was polymorph h with the sole blaVIM-2 cassette, which was identical to the original blaVIM-2-containing integron In56 from France (22). It is also possible that polymorphs a and g had either common ancestors with or were directly derived from integrons identified in France (In58) (21, 33) and Greece (AY460181), respectively.
Some of the blaVIM integron variants have started to disseminate in local populations of gram-negative nonfermenters, mostly the blaVIM-2-containing variants a, b/c, and e and f, as well as polymorph d with blaVIM-4. The dissemination of variants a and f in the regions of Upper Silesia and Mazovia, respectively, may be attributed to both clonal spread of producer strains and the DNA horizontal transfer. The clonal spread was illustrated well by "fresh" outbreaks of P. aeruginosa in the hospitals in P
ock (integron variant f) and Zabrze (variant a). On the other hand, the presence of variant f in P. aeruginosa isolates of three distinct PFGE types and in P. putida from four Mazovian hospitals (in P
ock and Warsaw) most probably resulted from the plasmid transfer, as demonstrated by the results of the mating experiment and the fact that at least two of these isolates shared plasmids of the same size (results not shown). Similarly, the integron variant a could have been exchanged between the P. aeruginosa clone from Zabrze and Acinetobacter from Bielsko-Bia
a, though only in the Acinetobacter isolate it was located on a plasmid. The combination of clonal spread and DNA horizontal transfer in dissemination of MBL producers has been documented several times until now, although usually at the level of a single center (14, 23). An essential role of the horizontal gene transfer in wider-scale epidemiology of MBLs has been either postulated or demonstrated: e.g., in Japan (27), Taiwan (36), and Italy (30).
The multicenter clonal dissemination occurred in the case of P. aeruginosa of PFGE types B (integron variants b/c or d) and C (variant e) in East Pomerania and Lower Silesia/Great Poland, respectively. In both cases, some level of diversity of PFGE patterns of the isolates indicated the microevolution commenced in the epidemic P. aeruginosa clones. The situation of the PFGE type B clone was complicated by the alternative presence of integrons of two different origins in its isolates, either with blaVIM-2 (b/c) or blaVIM-4 (d). All of the data suggested that the clone had been spread and diversified in hospitals of East Pomerania before the emergence of blaVIM-carrying integrons and that later it continued the dissemination. The clonal spread of MBL producers, though usually at the single-center level, has been reported in a number of papers so far and has been postulated to be the major mechanism of diffusion of these organisms (4, 6, 31). Recently, Riccio et al. described epidemiology of VIM-1-producing P. aeruginosa in Northern Italy, documenting independent introductions of blaVIM-1-containing integrons into the epidemic clonal complex of P. aeruginosa spread a priori in hospitals of the region (26).
Although the number of countries in which clinical isolates with acquired MBLs have been reported is high (16, 34), this work is one of the relatively few studies that show the molecular epidemiology of MBL-producing bacteria on a regional or countrywide scale (7, 26, 27, 30). The fact that it has consisted of five separate regional situations so far indicates the early stage of the dissemination of these organisms in Poland. Already striking are the number and diversity of the phenomena observed, such as the independent selection of several resistance determinants; their horizontal transmission, including the interspecies transfer, clonal spread of producer strains on a single center, and regional scale; parallel penetration of a bacterial clone by two different integron types with MBL genes; and evolution of an integron. This work may be a good starting point for the future precise monitoring of MBL producers in the country.
niuk, K. Filczak, B. Findysz-Dyl
g, E. Gospodarek, B. Jaworska-B
ach, J. K
dzierska, E. Kozera, D. Krawiecka, A. Mól, K. Pawlik, W. Piechota, W.
wistun, and A. Wróbel who kindly provided the clinical isolates and B. Bukowska for her technical support. We are also thankful to G. Jagura-Burdzy for the P. aeruginosa PAO1161 strain and J. Empel for critical reading of the manuscript. This work was partially financed by grant no. 6 PCRD LSHM-CT-2003-503-335 from the European Commission.
mska 30/34, 00-725 Warsaw, Poland. Phone: (48) 22 851 43 88. Fax: (48) 22 841 29 49. E-mail: gniadkow{at}cls.edu.pl. |
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