Antimicrobial Agents and Chemotherapy, May 2006, p. 1615-1622, Vol. 50, No. 5
0066-4804/06/$08.00+0 doi:10.1128/AAC.50.5.1615-1622.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Biology, Georgia State University, Atlanta, Georgia 30303
Received 14 June 2005/ Returned for modification 1 September 2005/ Accepted 7 February 2006
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Currently, antibiotic regimens to treat P. aeruginosa infections include a two-drug combination of ß-lactams and aminoglycosides or, alternatively, quinolones and cationic peptide antibiotics (7, 21). In the latest reports, the effectiveness of the ß-lactam and aminoglycoside combination is 70% to 98% in the United States and the United Kingdom (11). Failure of the treatment is mostly due to intrinsic and acquired resistance to a single and/or multiple antibiotics (11). Unfortunately, the resistance rate is increasing annually as reported by National Surveillance of Antimicrobial Resistance in clinical isolates of P. aeruginosa, in which nationwide (United States) multidrug resistance to ß-lactams, aminoglycosides, and quinolones has gradually increased, with a rate of 4% to 14% from 1993 to 2002 (22).
Antibiotic resistance of P. aeruginosa is caused by environmental factors such as exposure to subinhibitory concentrations of antibiotics or limiting concentrations of divalent cations (4, 11). It has long been reported that limiting concentrations of divalent Mg++ or Ca++ ions are involved in resistance to cationic peptide antibiotics (e.g., polymyxin B) in Salmonella enterica serovar Typhimurium and P. aeruginosa (4, 15). Molecular mechanisms of this resistance phenomenon in association with lipopolysaccharide (LPS) modification have been studied extensively in S. enterica serovar Typhimurium. The PhoPQ and PmrAB two-component regulatory systems have been reported to play roles in the induction of the LPS modification system pmrHFIJKLM operon, which is required for the biosynthesis of lipid A with 4-aminoarabinose to create a more positively charged LPS (4, 18). Homologues of serovar Typhimurium PhoPQ, PmrAB, and PmrHFIJKLM have also been reported in P. aeruginosa (15, 16).
Other possible environmental factors affecting antibiotic resistance in P. aeruginosa are polyamines. Polyamines (e.g., putrescine, spermidine, spermine, and cadaverine), derived from decarboxylation of arginine, ornithine, and lysine, are polycationic compounds found in all living organisms. Polyamines have also been known as a modulator in gene expression including DNA replication, transcription, translation, and protein activity in Escherichia coli, which directs optimal cell growth and viability as well as defense mechanisms against toxic environmental conditions (2, 3, 8, 26). P. aeruginosa can utilize many polyamines as sole carbon and/or nitrogen sources (13) and possibly as modulators to direct resistance to certain toxic environmental conditions. Although intensive research for polyamines has been done in recent decades, the actions of polyamines at the molecular levels in bacterial cells are largely unknown.
We have studied arginine metabolism and polyamine utilization in P. aeruginosa PAO1 (13) and have worked to understand the physiological roles of polyamines in this organism. In this report, we provide initial evidence from GeneChip experiments for the involvement of polyamines in antibiotic resistance. We substantiated this surprising finding and demonstrated that polyamines can trigger induction of resistance to cationic peptide antibiotics, aminoglycosides, quinolones, and dyes. Resistance to quinolones and cationic peptide antibiotics by exogenous spermidine appeared to be linked to the oprH-phoPQ operon.
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TABLE 1. Bacterial strains and plasmids
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Antibiotic susceptibility testing.
Antibiotic susceptibility was tested by the standard broth dilution method according to the guidelines of the Clinical and Laboratory Standards Institute (formerly NCCLS) (19, 20). Briefly, each stock solution of antibiotics was added to MMP-glucose broth to achieve serial twofold dilutions between 0.015 and 1,024 µg/ml and dispensed into sterile 17- by 100-mm snap-cap Falcon culture tubes (1 ml/tube; Fisher Scientific). Fresh overnight cultures of P. aeruginosa were diluted in saline to an optical density at 600 nm of 0.09 to 0.1 (approximately 1 x 108 viable cells per ml). A portion of the adjusted cell suspension (2 to 5 µl for
105 cells) was inoculated to each MMP broth sample containing antibiotics as indicated. The cell cultures were then incubated overnight (12 to 14 h) at 37°C. The MIC was defined as the lowest concentration of each antibiotic that completely inhibited the growth of the inoculum. MICs were determined and confirmed by three independent experiments.
Construction of lacZ promoter fusions and ß-galactosidase assays.
Putative promoter regions for oprH-phoPQ, PA4773-pmrAB, and an operon for LPS modification (PA3552-PA3559) were amplified using the following pairs of PCR primers: 5'-CAGGCAGATCACGAGAAACAG-3' and 5'-GCCGACGAAGTTGTCGGCGGC-3' (380-bp fragment) for oprH; 5'-GATCGACTACCGCGGGGTGGT-3' and 5'-GCAGTCGAACAGCTCGATGAC-3' (469-bp fragment) for PA4773; and 5'-CGTCTACGGGCGCACCGCAGA-3' and 5'-GGCGGCGATTTCGTCCTCGCC-3' (498-bp fragment) for PA3552. Genomic DNA extracted from P. aeruginosa PAO1 (10) was used as the template for PCR amplification. Each PCR fragment amplified by Pfu DNA polymerase (Stratagene) was purified by QIAGEN spin columns (Chatsworth, Calif.), ligated into a broad-host-range transcriptional fusion vector (pQF50) on the SmaI site, and introduced into E. coli DH5
by transformation. The orientation of each insert in the clone was confirmed by nucleotide sequencing at the Biotechnology Core Facility of Georgia State University. The resulting plasmids were introduced into appropriate P. aeruginosa strains by transformation (10). For measurements of ß-galactosidase activities, cells were grown in MMP with supplements as indicated in the figures until the optical density at 600 nm reached 0.7 to 0.8. Cells were collected by centrifugation (5,000 x g), and cell pellets were suspended in 50 mM potassium phosphate buffer (pH 7.0). After passage through a French pressure cell at 8,000 lb/in2, soluble cellular extracts were used for the measurement of ß-galactosidase activities with o-nitrophenyl-ß-D-galactopyranoside as the substrate (17). The protein concentration of each sample was determined by the method of Bradford (1) with bovine serum albumin as the standard.
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TABLE 2. Gene expression profiles of oprH-phoPQ, PA3552-PA3559, and pmrAB in P. aeruginosa PAO1
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Polyamines induced antibiotic resistance. To understand whether polyamines were involved in antibiotic susceptibility in P. aeruginosa, MICs of various antibiotics and dyes were determined and compared in the cells grown with or without polyamines (spermine, spermidine, putrescine, and cadaverine) or polyamine precursors (agmatine, ornithine, arginine, and lysine). As shown in Table 3, MICs of cationic peptide antibiotics (polymyxin B and colistin) increased eightfold in the cells grown with spermidine but were virtually unchanged in the cells grown with other compounds. For aminoglycosides (kanamycin and gentamicin), quinolones (ciprofloxacin and norfloxacin), and dyes (ethidium bromide and acridine orange), MICs increased up to 16-fold in the cells grown with all polyamines and agmatine. In contrast, the MIC of tetracycline was not affected by the presence of polyamines or polyamine precursors.
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TABLE 3. Antibiotic susceptibility of P. aeruginosa PAO1 and mutant strains grown with polyamines or their precursors
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To further substantiate the effects of polyamines on antibiotic resistance, the MIC of polymyxin B against PAO1 was determined in the presence of various concentrations of spermine and spermidine in Miller-Minton broth. As shown in Table 4, 0.6 mM spermidine can raise the MIC of polymyxin B by fourfold. Similarly, 0.3 mM spermine also caused a comparable increase in the MIC. A 16-fold increase in the MIC of polymyxin was observed with 20 mM spermidine or spermine.
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TABLE 4. Effect of polyamine concentrations on MIC of polymyxin B against P. aeruginosa PAO1
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FIG. 1. Effects of polyamines on the induction of oprH::lacZ and PA3552::lacZ fusions. P. aeruginosa PAO1 containing each of the fusions was grown in either MMP or Miller-Hinton broth in the presence of exogenous supplements as indicated (final concentration, 20 mM), and ß-galactosidase activities were measured as described in Materials and Methods.
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Overall, these results were consistent with those of the GeneChip analysis (Table 2) regarding the induction effect of spermidine on the oprH-phoPQ and PA3552-PA3559 operons. These data also suggested a differential effect of polyamines on the induction of the oprH and PA3552 promoters.
The oprH-phoPQ knockout mutants exhibited different antibiotic susceptibility profiles. P. aeruginosa MPAO1 and its isogenic transposon insertion mutants of oprH, phoP, phoQ, pmrB, and PA4773 were obtained from the University of Washington Genome Center (http://www.genome.washington.edu/UWGC/), and MICs of a variety of antibiotics against these strains were determined in cultures with or without spermidine (Table 5). MICs of tetracycline for transposon insertion mutants were much higher than for the parent strain MPAO1 due to the presence of a tetracycline resistance cassette carried by the transposon. As revealed from these experiments, the pmrB and PA4773 mutants had the same susceptibility profiles as strain MPAO1 (data not shown). Significant changes in antibiotic resistance profiles were observed in the oprH, phoP, and phoQ mutants as described below.
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TABLE 5. Antibiotic susceptibility of P. aeruginosa MPAO1 and its mutant strains grown with or without spermidine
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The MICs of cationic peptide antibiotics for the oprH and phoQ mutants were two- to eightfold higher than for the phoP mutant and the parent strain MPAO1 when tested in the absence of spermidine. As with results for strain MPAO1, the addition of spermidine also increased the MICs of cationic peptide antibiotics for the oprH and phoQ mutants; however, this effect of spermidine was completely abolished for the phoP mutant. These results indicated that PhoP, the response regulator of the PhoPQ two-component system, is essential for resistance induced by spermidine to cationic peptide antibiotics.
The MICs of quinolones for the oprH, phoP, and phoQ mutants were significantly lower than for the parent strain MPAO1 in the absence of spermidine. However, exogenous spermidine still exerted its effect on increasing the MICs of quinolones for the oprH and phoQ mutants but not for the phoP mutant. Similar to what was concluded for cationic peptide antibiotics, these results indicated that PhoP is important for the spermidine effect on induced resistance to quinolones.
An increase in the MIC value in the presence of spermidine was also found for the MICs of aminoglycosides and fluorescent dyes for the oprH, phoP, and phoQ mutants. It should be noted that P. aeruginosa possesses intrinsic resistance to kanamycin due to the presence of an aminoglycoside 3'-phosphotransferase (6), which might be the reason that the spermidine effect was more obvious with gentamicin (four- to eightfold fold) than with kanamycin (twofold). Consistent with what was reported previously (15), we also observed that the MIC of kanamycin increased by fourfold for the oprH, phoP, and phoQ mutants.
Magnesium has no effect on polyamine-mediated antibiotic resistance. It has been reported that P. aeruginosa grown in low magnesium (e.g., 20 µM) medium exhibited increased resistance to cationic antibiotics and aminoglycosides, and expression of oprH-phoPQ and the PA3552-PA3559 operon was also induced under this condition (22). To test whether magnesium limitation affects polyamine-mediated antibiotic resistance, the MICs of cationic peptide antibiotics, aminoglycosides, quinolones, tetracycline, and dyes were measured in spermidine-supplemented medium with either limiting (20 µM) or high (2 mM) concentrations of magnesium. Magnesium concentrations had no effect on spermidine-induced increases in MICs (data not shown). Magnesium limitation alone was able to increase the MICs of cationic peptides and aminoglycosides but showed no effect on other compounds tested (Table 3). These data suggested that the physiological responses triggered by magnesium limitation are different from those of polyamines.
The possible effect of magnesium on expression of the oprH promoter was analyzed by measurements of ß-galactosidase activities from the oprH::lacZ transcriptional fusion. As shown in Fig. 2, spermidine induction of the oprH promoter activity was not affected by magnesium concentrations. In the absence of spermidine, the oprH promoter was significantly induced by magnesium limitation, as reported previously (20).
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FIG. 2. Effects of magnesium concentrations on spermidine-dependent induction of the oprH promoter. The oprH::lacZ fusion was introduced into P. aeruginosa PAO1, and ß-galactosidase activities from the cells grown under the indicated culture conditions were measured as described in Materials and Methods.
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Expression of the oprH::lacZ transcriptional fusion was monitored in cells grown under different concentrations of spermidine. As shown in Fig. 3, induction by spermidine in the wild-type strain PAO1 was concentration dependent. In the spuF mutant, exogenous spermidine still exerted an induction effect on the oprH promoter, but the level of induction by 20 mM spermidine was approximately two-thirds of that in the parental strain.
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FIG. 3. Effects of spermidine uptake on induction of ß-galactosidase activities. The oprH::lacZ fusion was expressed in P. aeruginosa PAO1 (dark gray bars) and its mutant strain (spuF::Tc) (light gray bars) in the presence of different concentrations of spermidine.
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The resistance spectrum triggered by polyamine supplementation was significantly broader than that of magnesium limitation. Magnesium-mediated resistance included cationic peptide antibiotics and aminoglycosides (15). We demonstrated (Table 3) that the MICs of aminoglycosides, quinolones, and fluorescent dyes were increased to different levels by all polyamines and that the MICs of cationic peptide antibiotics were increased significantly by spermidine and spermine. These results also suggested that the spermidine- and/or spermine-responsive molecular mechanisms may be different from those of other polyamines.
Spermidine-mediated resistance was independent of magnesium concentration. It has been reported that the magnesium-mediated response was only induced by low concentrations of this divalent cation. In contrast, spermidine-mediated resistance required 5 mM to 20 mM concentrations this polyamine, and this response was not affected by the concentrations of magnesium (20 µM versus 2 mM). The concentration required for the induction of resistance may be clinically relevant to the efficiency of antibiotic treatment. The physiological concentrations of magnesium and polyamines are in the millimolar ranges in eukaryotic cells and tissues (3). These levels of polyamines, but not magnesium, would be enough to induce resistance in P. aeruginosa against a variety of antibiotics.
The genetic responses to spermidine and magnesium are different but overlapping. Spermidine supplementation or magnesium limitation (15, 16) caused cationic peptide resistance in P. aeruginosa. Cationic peptide antibiotics (e.g., polymyxin B) were reported to disrupt the structural organization of LPS, which increases permeability of the cationic peptide antibiotics and kills bacterial cells. For cell survival, a cascade of signal transduction was triggered to add 4-aminoarabinose residues to the lipid A portion of LPS. As a result, this modification makes LPS more positively charged, reducing the binding potential of cationic peptide antibiotics. In the wild-type strain of P. aeruginosa, this regulatory response worked only under very low magnesium conditions, mediated by the PhoPQ two-component system to transmit signals to the PA3552-PA3559 operon of LPS modification. It has been proposed that the PhoP response regulator by itself was active and phosphorylated by unknown mechanisms and that the membrane-anchored PhoQ sensor acts as a phosphatase to deactivate PhoP by the presence of magnesium (15, 16). In the case of spermidine, the results of GeneChip experiments and promoter fusion studies have indicated that this compound induced the expression of the oprH-phoPQ and PA3552-PA3559 operons regardless of the magnesium concentrations. In addition, the results of knockout mutant analyses showed that only PhoP but not PhoQ was essential for cationic resistance in the presence of spermidine. This observed delineation of PhoP and PhoQ was consistent with what has been reported by Hancock and coworkers (15, 16) and suggested interactions between the PhoPQ system and the spermidine-responsive regulatory elements yet to be identified. The PmrAB two-component system was excluded from this study as possible candidates for spermidine- or polyamine-responsive regulatory elements based on the results of GeneChip analysis, promoter fusions, and phenotypes of knockout mutants.
While the involvement of PhoPQ in causing resistance to cationic peptide antibiotics has been reported (15), we were surprised that PhoPQ also played a role in quinolone susceptibility (Table 4). In addition, we also observed that inactivation of PhoPQ can increase the MIC of kanamycin, which was consistent with what was reported previously (15), but produced no change in the MIC of another aminoglycoside, gentamicin. More work is required to elucidate the diverse molecular mechanisms of PhoPQ in the control of antibiotic susceptibility.
The complexity of polyamine-mediated antibiotic resistance was further reflected by the results of spermidine uptake mutants. Spermidine uptake was greatly diminished in these mutants as reported previously (13). Resistance in the presence of spermidine to aminoglycosides and quinolones was lost in these mutants (Table 3), suggesting that an increased intracellular concentration of spermidine, and perhaps polyamines in general, is required for the induction of resistance mechanisms for these antibiotics. Contrarily, resistance to cationic peptide antibiotics and dyes in the presence of spermidine was retained in the uptake-deficient mutants, and a much lower concentration of spermidine or spermine was sufficient to increase the MIC of polymyxin B significantly (Table 4). These results would suggest the presence of a spermidine-responsive sensor residing on the cytoplasmic membrane in control of the phosphorylation status of PhoP.
The presence of multiple efflux pumps is known to account for high levels of intrinsic antibiotic resistance in P. aeruginosa. It is reasonable to speculate that spermidine and other polyamines may be able to induce the expression of efflux pumps. We considered this hypothesis unlikely as no significant induction of any known efflux systems by spermidine can be identified from DNA microarray analysis (data not shown). However, polyamines might have a positive effect on the synthesis or the activity of efflux pumps by posttranscriptional regulation. In summary, the polyamine-mediated antibiotic resistance reported here warrants further studies to elucidate the molecular mechanisms of drug resistance of these potent compounds in P. aeruginosa.
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