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Antimicrobial Agents and Chemotherapy, September 2006, p. 3102-3110, Vol. 50, No. 9
0066-4804/06/$08.00+0 doi:10.1128/AAC.00423-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Boris I. Bavchvarov,1,
F. Javier Pérez-Victoria,1
Francisco Muñoz-Martínez,1
Mathias Maitrejean,2
M. Paola Costi,3
Denis Barron,2
Attilio Di Pietro,4
Santiago Castanys,1,
and
Francisco Gamarro1,
*
Instituto de Parasitología y Biomedicina "López-Neyra," Consejo Superior de Investigaciones Científicas, Granada, Spain,1 Laboratoire des Produits Naturels, UMR 5013 CNRS/Université Claude Bernard-Lyon I, Villeurbanne, France,2 Dipartimento di Scienze Farmaceutiche, Universit á degli Studi di Modena e Reggio Emilia, Via Campi 183, 41100 Modena, Italy,3 Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS/Université de Lyon, IFR 128 BioSciences Lyon-Gerland, 7 Passage du Vercors, 69637 Lyon Cedex 07, France4
Received 5 April 2006/ Returned for modification 3 May 2006/ Accepted 27 June 2006
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Pgps belong to the ATP-binding cassette (ABC) superfamily of transporters (19). They export a wide range of hydrophobic drugs from the cell, thus conferring an MDR phenotype on tumor cells (2) and protozoan parasites (6, 18, 36). Pgps consist of two homologous halves, each comprising a transmembrane domain (TMD) involved in drug efflux and a cytosolic nucleotide-binding domain (NBD) responsible for ATP binding and hydrolysis. Mammalian Pgp can be inhibited by reversal agents which compete with drug binding to the TMDs (14). However, these modulators only poorly sensitize the MDR phenotype in Leishmania parasites (35). In contrast, two different families of natural compounds, flavonoids and dihydro-ß-agarofuran sesquiterpenes, are able to efficiently overcome the Leishmania MDR phenotype, probably by acting at different levels (35). Some flavonoid derivatives bind to a purified recombinant NBD from LtrMDR1 and interact with both the ATP-binding site and a vicinal hydrophobic region (7, 11, 34) with an affinity that correlates with their abilities to modulate drug accumulation and to reverse the resistance phenotype of a Leishmania tropica MDR line (34, 37). On the other hand, some sesquiterpenes efficiently overcome the Leishmania MDR phenotype (21, 38, 39) by increasing drug accumulation (21, 38); their binding to the TMDs of human Pgp has been suggested recently (27).
A main problem that has hampered the clinical use of many human Pgp inhibitors is related to their intrinsic cytotoxicity (14). To diminish such possible side effects, in the present study we have tested the ability of combined suboptimal doses of the above different modulators targeting both NBDs and TMDs within LtrMDR1 to increase drug accumulation and reversal of the parasite MDR phenotype while avoiding any toxic effect in mammalian cells. Preliminary structure-activity relationships have allowed us to design a new, potent flavonoid derivative with high affinity for the cytosolic NBDs. As modulators directed to the TMDs, we have used one of the most potent sesquiterpenes described, named C-3 (38), and we have also studied the effects of two of the most promising, latest-developed modulators of human Pgp, zosuquidar (LY335979) (8, 9) and elacridar (GF120918) (20, 40), currently used in clinical trials. The results show that this combinatorial strategy efficiently overcomes parasite miltefosine resistance by inhibiting drug efflux without any cytotoxicity in the parental nonresistant Leishmania line and in different mammalian cell lines.
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-benzoyloxy-8
,2-methylbutyroyloxy-1
,6ß,15-triacetoxy-4ß-hydroxydihydro-ß-agarofuran) was isolated from Maytenus canariensis as previously described (17). Zosuquidar (LY335979) was kindly provided by Eli Lilly and Company (Indianapolis, IN) (to A.D.), and elacridar (GF120918) was kindly provided by GlaxoSmithKline (Madrid, Spain) (to F.G.). 2'-(3')-N-Methylanthraniloyl-ATP (MANT-ATP) and 2',3'-O-(2,4,6-trinitrophenyl)-ATP (TNP-ATP) were obtained as described previously (10). The pQE-30 plasmid, Escherichia coli M15/pREP4 cells, and Ni2+-nitrilotriacetic acid agarose gel were from QIAGEN.
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FIG. 2. Rational design of 8-(1,1-DMA)-DHS. Chemical structure of the designed flavonoid with (i) ring B branched at position 2, (ii) an oxidized 2,3 bond, (iii) a monolignol unit adjacent to ring B, (iv) hydroxyl groups at positions 3 and 5, (v) a hydrophobic substitution at position 8, and (vi) 1,1-dimethylallyl as the hydrophobic group.
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Overexpression and purification of the N-terminal NBD and binding assays. (i) Construction of expression vectors. Amplification of the DNA encoding N-terminal NBD1 including the linker region (NBD1ext) was performed by PCR. The two primers specific for LtrMDR1 and corresponding to NBD1ext, stretching from Thr-417 to Lys-770, were 5'-GTCGACTCACCGAGTCTCGTGCTG-3' and 5'-AAGCTTGTCCTTATTCATTTCCATCAG-3', respectively. The PCR product was ligated into plasmid pQE-30 (QIAGEN), and the resulting plasmid, pQE30-NBD1ext, was restriction mapped and sequenced to confirm the expected sequence.
(ii) Overexpression, purification, and renaturation of NBD1ext. E. coli M15/pREP4 cells were transformed with pQE30-NBD1ext and grown at 37°C in Terrific broth medium (41) containing 50 µg of ampicillin/ml and 25 µg of kanamycin/ml until the absorbance at 600 nm reached 0.7. Expression of NBD1ext was induced with 0.5 mM IPTG for 4 h at 37°C. Cells were harvested by centrifugation and resuspended (5 ml buffer/g pellet) in a buffer containing 10 mM potassium phosphate (pH 7.5), 10 mM ß-mercaptoethanol, 1.3 mM benzamidine, 1 mM 1,10-phenanthroline, 57 µM phenylmethylsulfonyl fluoride, 48 µg/ml crude soybean trypsin inhibitor, 48 µg/ml aprotinin, and 20 µg/ml leupeptin. Cells were lysed with lysozyme (1 mg/ml) at room temperature for 20 min, and the solution was sonicated. NBD1ext was found as inclusion bodies that were solubilized in urea buffer (50 mM potassium phosphate [pH 8.0], 10 mM ß-mercaptoethanol, 10 mM imidazole, 8 M urea). NBD1ext was purified by affinity chromatography in an Ni2+-nitriloacetic acid column equilibrated in urea buffer. The retained protein was eluted with an imidazole linear gradient of 0 to 100 mM in urea buffer. One-milliliter fractions were collected and analyzed by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. NBD1ext was renatured with 20 volumes of refolding buffer (50 mM potassium phosphate [pH 8.0], 10 mM ß-mercaptoethanol, 10 mM EDTA) and concentrated with Centriprep Amicon 30 and dialyzed twice, first in refolding buffer without 10 mM ß-mercaptoethanol and then in 10 mM potassium phosphate (pH 8.0)-1 mM EDTA. Dialyzed protein was aliquoted and stored at 80°C. Protein concentration was routinely determined by the method of Bradford with a Coomassie blue protein assay reagent kit from Bio-Rad.
(iii) Fluorescence emission measurements. Experiments were performed at 25°C with an SLM-AMINCO series 2 spectrofluorimeter. The binding of the different compounds was monitored as previously described (34), except that 0.5 µM NBD1ext was used and the protein was excited at a wavelength of 295 nm and the emission wavelength was scanned in a range of 310 to 370 nm.
Western blot analysis. Western blot analysis of crude Leishmania extracts was performed as previously detailed (30), with the polyclonal antibody against LtrMDR1 previously described by Chiquero et al. (5).
Electron microscopic analysis. Log-phase cultures of wild-type and resistant L. tropica promastigotes were incubated at 28°C for 8 h in the absence or presence of 150 µM miltefosine. For electron microscopy, 2 x 108 cells of each sample were harvested by centrifugation at 2,000 x g for 15 min at 4°C, washed twofold by resuspension in ice-cold phosphate-buffered saline, and fixed with glutaraldehyde (2.5%) for 4 h at 4°C. After fixation, the cells were washed three times for 20 min at 4°C with 0.1 M cacodylate (pH 7.4). Postfixation was performed in 2% (wt/vol) osmium tetroxide (OsO4) for 2 h at room temperature. Subsequently, the cells were washed two times for 20 min; dehydrated in 50%, 70%, 90%, and 2 x 100% ethanol; and embedded in Epon 812. Ultrathin sections of 500 Å were cut on a Leica Ultracut S ultramicrotome, counterstained with uranyl acetate and lead citrate, and observed with a Zeiss 902 transmission electron microscope.
Intracellular [14C]miltefosine determination. The internalization of [14C]miltefosine and the efflux of internalized [14C]miltefosine were measured as previously described (31). The effect of the cocktail of inhibitors on miltefosine accumulation was studied by incubating the parasites with [14C]miltefosine for 1 h with or without the modulators.
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FIG. 1. [14C]miltefosine accumulation and efflux in Leishmania lines. (A) Time-dependent accumulation of [14C]miltefosine. Labeling of wild-type (solid circles) and MDR (open circles) parasites was measured as described in Materials and Methods, and the [14C]miltefosine concentration, expressed in counts per minute per microgram of protein, was monitored at different times. All values represent the means ± the standard errors of two independent experiments, each of which was performed in duplicate. (B) Time-dependent [14C]miltefosine efflux. The outward transport of [14C]miltefosine was measured after preincubation of wild-type (solid circles) and MDR (open circles) parasites with [14C]miltefosine as described in Materials and Methods, and the decay in radioactivity was monitored at different times. The data are expressed as the percentage of the initial amount of [14C]miltefosine incorporated and represent the means ± the standard errors of two independent experiments, each of which was performed in duplicate.
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In order to study the interaction of this new compound with the cytosolic domains of LtrMDR1, the N-terminal NBD (NBD1ext) of the transporter was purified as a hexahistidine-tagged recombinant protein. As shown in Fig. 3A, the recombinant protein was highly overexpressed in E. coli upon induction of the bacteria with IPTG and mainly recovered as inclusion bodies. A protocol including urea denaturation and renaturation by quick dilution after affinity chromatography allowed the purification of 10 mg of protein per liter of bacterial culture. The binding of different compounds to renatured and purified NBD1ext was monitored by quenching of the protein's intrinsic fluorescence. NBD1ext bound the ATP analogues TNP-ATP (Fig. 3B) and MANT-ATP (Fig. 3C) with respective Kd values of 6.75 ± 1.80 µM and 11.48 ± 2.66 µM, similar to those previously described for LtrMDR1 NBD2 and NBDs isolated from other ABC transporters (35). Finally, the flavonoid derivative 8-(1,1-DMA)-DHS bound with high affinity to NBD1ext (Fig. 3D), with a Kd in the nanomolar range (0.109 ± 0.038 µM) and high maximal quenching (84.2%).
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FIG. 3. Interaction of purified recombinant NBD1ext with ATP analogues and LtrMDR1 inhibitors. (A) Overexpression and purification of recombinant NBD1ext. Coomassie-stained sodium dodecyl sulfate-polyacrylamide gel electrophoresis of inclusion bodies after IPTG induction, cell lysis, and recovery of the insoluble fraction (lane 3) and of purified and refolded NBD1ext (lane 4). Lane 2 corresponds to molecular mass markers (Bio-Rad) with the values (in kDa) indicated on the left (lane 1). (B, C) Interaction of recombinant NBD1ext with ATP analogues. The binding of TNP-ATP (B) or MANT-ATP (C) to 0.5 mM purified recombinant NBD1ext was determined by quenching of the protein's intrinsic fluorescence as described in Materials and Methods. (D) Concentration-dependent binding of the flavonoid 8-(1,1-DMA)-DHS (open circles) and the sesquiterpene C-3 (closed circles) to purified NBD1ext under the same conditions as described for panels B and C.
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FIG. 4. Reversal of DNM resistance by inhibitors in an MDR L. tropica line. Cell growth of either wild-type or resistant parasites was determined after incubation at 28°C for 72 h. Wild-type parasites (black bars) were incubated in the presence of different concentrations of inhibitors. Resistant parasites (gray bars) were incubated with the same concentrations of inhibitors in the presence of 150 µM DNM. The results are expressed as the percent growth inhibition observed in each cell line compared to the absence of a modulator (control cells). Data are the mean of three independent experiments performed in duplicate, with standard deviations below 10%.
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We also studied the reversal effects of two of the latest-developed potent inhibitors of human Pgp known to interact with its TMDs, namely, zosuquidar (LY335979) (8, 9) and elacridar (GF120918) (20, 40). In contrast to other modulators of mammalian Pgp, both compounds were quite active in reversing DNM resistance in the MDR Leishmania line, elacridar being more toxic for the parental wild-type line (Fig. 4B and C).
Many human Pgp modulators which bind to its TMD are themselves also transported by the pump, requiring high concentrations for efficient inhibition, which can produce toxic effects in cells not overexpressing the transporter (14). However, the above compounds are probably not transported by LtrMDR1, as indirectly deduced from the absence of cross-resistance in the MDR line (data not shown): all four inhibitors were similar in toxicity in both MDR and parental wild-type Leishmania lines, elacridar being the more toxic compound (with a 50% inhibitory concentration of around 6.5 µM) and the sesquiterpene being the less toxic one (50% inhibitory concentration of about 150 µM).
Effects of combining suboptimal doses of inhibitors on the MDR phenotype. One of the main drawbacks of human Pgp modulators is their relative intrinsic cytotoxicity in the patients. Besides, these kinds of flavonoids and sesquiterpenes usually are more cytotoxic to mammalian cells than to Leishmania cells (unpublished results). In order to minimize such a problem, we have studied the reversal effect produced by combining concentrations of modulators that alone produced less than 30% reversal, but without any side effect in the parental wild-type line, as a control of intrinsic cytotoxic effects. The DNM-reversing ability of this drug combination is shown in Fig. 5. When 1 µM flavonoid, the compound directed against the NBDs, was combined with one of the three compounds targeting the TMDs (C-3, elacridar, or zosuquidar) at 1 µM, growth inhibition of 16 to 31% was observed. This reversal effect was increased to up to around 50% when 1 µM flavonoid was combined with two of the TMD-directed inhibitors at 1 µM. Finally, when all of the inhibitors were combined at 1 µM (cocktail 1) or the flavonoid concentration was increased to 2.5 µM and the TMD-directed inhibitors were kept at 1 µM (cocktail 2), additive reversal effects in the Leishmania MDR line were observed, leading to almost complete reversal of DNM resistance. This combination of suboptimal modulator doses was not cytotoxic at all for the parental wild-type line (less than 4% growth inhibition; data not shown), suggesting that the effect is really due to Pgp inhibition. Furthermore, only slight toxicity was produced by these inhibitor combinations in five different mammalian cell lines (Table 1).
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FIG. 5. Reversal of DNM resistance by combination of suboptimal doses of inhibitors in the MDR L. tropica line. Cell growth of resistant parasites was determined under the conditions described in the legend to Fig. 4, in the presence of different combinations of inhibitors. Data are the means of three independent experiments performed in duplicate, with standard deviations below 15%. pDHS, 8-(1,1-DMA)-DHS; C-3, sesquiterpene C-3; Zos., zosuquidar (LY335979); Ela., elacridar (GF120918).
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TABLE 1. Effects of inhibitor cocktails on different mammalian cell lines
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FIG. 6. Reversal of ALP resistance in the MDR L. tropica line by cocktails of inhibitors. Cell growth of either wild-type parasites (solid circles) or resistant parasites deprived of DNM for 96 h (open circles) was determined after 72 h of incubation with different concentrations of the ALPs edelfosine (A) and miltefosine (B) and in the absence (circles) or in the presence (triangles) of cocktail 1 (solid triangles) or cocktail 2 (open triangles). Data are means of three independent experiments performed in duplicate, and standard deviations are represented by error bars. Inset in panel B, LtrMDR1 expression level in wild-type parasites (lane 1), resistant parasites (lane 2), and resistant parasites treated for 72 h with the cocktail 2 (lane 3), determined by Western blot assay.
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FIG. 7. Effects of inhibitor cocktails on parasite survival after short miltefosine incubation times. (A) Cell viability of either WT parasites or resistant parasites deprived of DNM as described in the legend to Fig. 2D (MDR) and incubated in the absence or presence of either cocktail 1 or cocktail 2 was determined by their ability to reduce MTT after 8 h of incubation in the presence or absence of 150 µM miltefosine. Data are expressed as percent cell viability with respect to the viability measured for the controls (WT or MDR parasites without any treatment). (B) Before addition of MTT, 5 x 108 million parasites were separated and observed by electron microscopy as described in Materials and Methods. Each lowercase letter (a to f) in panel A corresponds to a part of panel B, as follows: (a) wild-type parasites without treatment (magnification, x10,000), (b) resistant parasites incubated with cocktail 2 (magnification, x10,000), (c) wild-type parasites treated with 150 µM miltefosine (magnification, x10,000), (d) resistant parasites treated with 150 µM miltefosine (magnification, x12,500), (e) resistant parasites incubated with cocktail 1 and 150 µM miltefosine (magnification, x20,000), and (f) resistant parasites incubated with cocktail 2 and 150 µM miltefosine (magnification, x20,000).
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FIG. 8. Effect of a cocktail of inhibitors on [14C]miltefosine accumulation. The uptake of [14C]miltefosine in wild-type and MDR parasites was measured for 1 h in the absence (vertical and horizontal shaded bars, respectively) or presence (gray and black filled bars, respectively) of cocktail 1, as described in Materials and Methods. The data shown are the means and standard errors of three independent experiments, each performed in duplicate, and are expressed as percent [14C]miltefosine accumulation with respect to the accumulation measured for the control.
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We have previously demonstrated the involvement of LtrMDR1 overexpression in the miltefosine resistance of an MDR Leishmania line (38). In this paper, we show the direct involvement of this transporter in the level of miltefosine accumulation in L. tropica, as the resistant line presents a higher miltefosine efflux rate that leads to a reduced level of drug accumulation, and the specific inhibition of LtrMDR1 by the cocktail of inhibitors restores the uptake of [14C]miltefosine to levels close to that of the wild-type line. To our knowledge, this is the first report showing outward transport of the drug as a mechanism of miltefosine resistance in any cell type.
Our previous results concerning LtrMDR1 modulation suggested the presence of two different main targets for the binding of inhibitors to this ABC transporter: the drug-binding site(s) within the TMDs and the cytosolic NBDs (35). In addition, there will probably be different specific binding sites within these TMDs able to interact with drugs and/or modulators, as described for mammalian Pgps (29). The NBDs also contain, in addition to the ATP site, a vicinal hydrophobic binding region able to interact with nontransported hydrophobic steroids, protein kinase C inhibitor derivatives, and hydrophobic flavonoids (as reviewed in references 14 and 35). We therefore decided to combine suboptimal doses of different modulators targeting both NBDs and TMDs of LtrMDR1, in order to increase drug accumulation and induce reversal of the MDR phenotype, especially related to miltefosine resistance, while avoiding potential toxic effects in mammalian cells, an important drawback associated to Pgp inhibitors. To explore this possibility, we have rationally designed, as a modulator directed to the NBDs, a new compound meeting all of the requirements that had been shown to increase flavonoid interaction with the cytosolic NBDs of LtrMDR1, and therefore the reversal activity on the MDR of the parasite (Fig. 2). This new flavonoid showed the highest affinity ever described for a cytosolic domain of LtrMDR1 and the best reversal effect on DNM resistance in the MDR Leishmania line. Indeed, the Kd was around threefold lower than that observed with the same NBD1ext for 8-(3,3-DMA)-DHS, the previously most potent flavonoid derivative, also correlating with a twofold higher reversal of DNM resistance (data not shown). All of these data also support the ideas that the flavonoid reversal effect is correlated with a direct interaction with the cytosolic domains of LtrMDR1 and that both NBD1 and NBD2 can be used as drug targets for inhibitor design. As expected for an NBD-targeted compound, this flavonoid derivative does not seem to be transported by LtrMDR1, an interesting property for any inhibitor of these proteins (14). The structure-activity relationships shown here are clearly different from those reported for the interaction of flavonoids with other ABC transporters involved in mammalian MDR such as BCRP/ABCG2 (1) and MRP1 (47), where flavonoid inhibitory effects are probably due to binding to the TMDs. As modulators directed to the TMDs of the transporter, we have chosen first the sesquiterpene C-3. This compound efficiently overcame the MDR phenotype of the Leishmania line by modulating drug accumulation (38). Although this compound does not contain some of the general chemical features described for many MDR-reversing agents, such as a conjugated planar ring or a substituted tertiary amino group (15), its low binding to NBD1ext (Fig. 3D), together with its efficient competition with [3H]azidopine photolabeling of human Pgp (27), strongly supported an interaction with the TMDs of the transporter. This interaction at the TMDs, however, does not seem to lead to transport of the compound. We also analyzed the reversing effect of some new modulators of human Pgp that are known to interact with its TMDs and not to be transported (8, 9, 20, 40). While conventional Pgp inhibitors such as verapamil, cyclosporine, and quinidine were not very efficient at reversing the resistance phenotype in Leishmania (35), we show here that the latest-developed modulators zosuquidar (LY335979) and elacridar (GF120918) constitute new classes of promising reversal agents in these parasites.
Finally, we have shown that combining the flavonoid with the other three selected compounds, either separately or together, led to additivity of their reversing effects in the Leishmania MDR line, reaching complete sensitization to miltefosine, without producing any cytotoxicity in either the parental wild-type line or various mammalian cell lines. These results agree with the studies of Stein et al., who combined low, nontoxic, concentrations of up to 18 known human Pgp modulators, with cumulative effects on MDR reversal (26). The authors also detected cooperative, competitive, and uncompetitive interactions between the modulators (13, 23), probably due to the presence of different interacting sites for these agents within Pgp. A more detailed analysis of the mechanism of LtrMDR1 inhibition produced here by each of the inhibitors developed, alone and in combination, will require LtrMDR1 overexpression and purification, which is in progress. The use of combinations of chemosensitizers at nontoxic levels has also been efficiently used to overcome chloroquine resistance in Plasmodium falciparum and proposed to be a viable treatment to restore the efficacy of this drug in patients with malaria (48). Although the use of modulators to chemosensitize drug-resistant parasites is a very promising therapeutic strategy (recently reviewed in reference 24), their effect on the pharmacokinetic parameters of concomitantly administered antiparasitic drugs have to be investigated before they can be clinically applied.
In conclusion, we have shown that it is possible to overcome LtrMDR1-mediated miltefosine resistance in Leishmania, characterized by a high miltefosine efflux rate that leads to diminished drug accumulation in the parasite, by targeting different domains of the transporter with suboptimal doses of inhibitors, avoiding any toxic effect in the parental wild-type line and in different mammalian cell lines.
We acknowledge Pharmacia-Spain (Barcelona, Spain), GlaxoSmithKline (Madrid, Spain), and Eli Lilly and Company (Indianapolis, IN) for the kind gift of DNM, elacridar (GF120918), and zosuquidar (LY335979), respectively. Also, we are grateful to Zentaris (Frankfurt, Germany) for providing the miltefosine used in this study.
Present address: Sección Genética/Facultad de Ciencias, Montevideo, Uruguay. ![]()
Present address: Institute of Molecular Biology, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria. ![]()
S.C. and F.G. are equal senior investigators in this study. ![]()
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