Previous Article | Next Article ![]()
Antimicrobial Agents and Chemotherapy, November 2007, p. 3969-3976, Vol. 51, No. 11
0066-4804/07/$08.00+0 doi:10.1128/AAC.00422-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Otolaryngology-Head and Neck Surgery, Wakayama Medical University, Wakayama, Japan,1 Surveillance Subcommittee, Japan Society for Infectious Diseases in Otolaryngology,2 Department of Otolaryngology, Second Affiliated Hospital, Fujita Health University, Nagoya, Japan3
Received 28 March 2007/ Returned for modification 30 April 2007/ Accepted 27 July 2007
|
|
|---|
1 µg/ml), 37 (14.0%) intermediately resistant strains (MIC = 2 µg/ml), and 66 (25.0%) resistant strains (MIC
4 µg/ml). According to PCR-based genotyping, 172 (65.1%) of the isolates had mutations in the ftsI gene and were negative for the ß-lactamase (bla) gene. These 172 isolates were thus defined as genetically ß-lactamase-negative ampicillin-resistant (gBLNAR) strains. The ftsI mutant group included 98 (37.1%) strains with group I/II mutations in the variable mutated region (group I/II gBLNAR) and 74 (28.0%) strains with group III mutations in the highly mutated region (group III gBLNAR). Eighty-seven (33.0%) of the isolates were genetically ß-lactamase-negative ampicillin-susceptible (gBLNAS) strains. The group III gBLNAR strains showed resistance to ß-lactams. Only five strains (1.9%) were positive for a bla gene encoding TEM-type ß-lactamase. The three clusters consisting of 16 strains found among the 61 BLNAR strains (MIC
4 µg/ml and without the bla gene) showed identical or closely related DNA restriction fragment patterns. Those isolates were frequently identified among strains with a MIC to AMP of 16 µg/ml. The current study demonstrates the apparent dissemination and spread of a resistant clone of H. influenzae among medical centers in Japan. The gBLNAR strains show a remarkable prevalence among H. influenzae isolates, with the prevalence increasing with time. This fact should be taken into account when treating URT infections. |
|
|---|
The mechanism of resistance in the BLNAR strains involves decreased affinities of penicillin binding proteins (PBPs) for ß-lactam antibiotics (26, 30). Among the several PBPs of H. influenzae, alterations in PBP3-mediating septal peptidoglycan synthesis during cell division are essential for developing resistance (2, 4). Recent studies characterizing mutations of the ftsI gene encoding PBP3 classified the BLNAR strains into three groups based on deduced amino acid substitutions (36). These are the group I strains, with the substitution of Arg-517 for His-517 (Arg-517-His) near the conserved Lys-Thr-Gly (KTG) motif; the group II strains, with the substitution Asn-526-Lys; and the group III strains, with the substitution of three amino acid residues (Met-377, Ser-385, and Leu-389) positioned near the conserved Ser-Ser-Asn (SNN) motif for Ile-377, Thr-385, and Phe-389, respectively, in addition to the substitution Asn-526-Lys (3, 9, 10, 17, 36). Group II BLNAR strains were further divided into four subgroups: subgroup IIa, with the substitution Asn-526-Lys without the substitution for Ala-502; subgroup IIb, with the substitution Val-502-Ala; subgroup IIc, with the substitution Thr-502-Ala; and subgroup IId, with the substitution Val-449-Ile. Of the various missense mutations of the ftsI gene, resistance to ß-lactam antibiotics largely depends on the substitutions Arg-517-His, Asp-526-Lys, Ser-385-Thr, and Leu-589-Phe. Intermediate AMP resistance is commonly found in groups I and II; however, isolates in group III are associated with a higher level of AMP resistance (3, 10, 36).
In 2003, the Japanese Society of Infectious Diseases in Otolaryngology conducted its fourth nationwide surveillance to define the causative pathogens of infectious diseases of the upper respiratory tract (URT) and their contemporary resistance status in Japan. In this report, we present the first part of the surveillance data regarding H. influenzae, including the genetic characteristics and the clonal pattern of BLNAR strains.
(This work was presented at the 45th Interscience Conference on Antimicrobial Agents and Chemotherapy in Washington, DC, 16 to 19 December 2005.)
|
|
|---|
Identification of H. influenzae. Specimens were collected aseptically with small cotton swabs and placed in an anaerobic transport jar (Eiken Chemical Co., Tokyo, Japan). All strains were identified at the Mitsubishi Kagaku Bio-Clinical Laboratories (Tokyo, Japan). H. influenzae strains were identified and confirmed by colony morphology, Gram staining, growth in chocolate agar but not in blood agar, the catalase test, and the X and V factor requirement. Production of ß-lactamase was examined using a nitrocefinase disc (Nippon Becton Dickinson Company Ltd., Tokyo, Japan). Until the study began, the isolates were stocked in litmus milk broth (Difco Laboratories, Detroit, MI) containing 10% glycerol at –80°C. Serotyping of H. influenzae was determined by a slide agglutination procedure using type b antiserum (Denka Seiken, Tokyo, Japan). The method used to identify H. influenzae in this study could not accurately distinguish these strains from Haemophilus haemolyticus. Thus, some of the H. influenzae strains may in fact be H. haemolyticus (27).
Antimicrobial susceptibility. Antimicrobial susceptibilities were determined by measuring the isolates' MICs at Mitsubishi Kagaku Bio-Clinical Laboratories using the broth microdilution method according to the procedure set forth by the Clinical and Laboratory Standards Institute (CLSI) (2a). The 10 antibiotics tested in this study were AMP, clavulanate-amoxicillin, cefpodoxime, cefditoren, cefuroxime, clarithromycin, azithromycin, telithromycin, levofloxacin, and meropenem. The breakpoints recommended by the CLSI were used to define susceptibility patterns.
PCR-based genotyping. The oligonucleotide primers used in this study are listed in Table 1. Primers for the ftsI gene were used to amplify both the variable mutated locus (Asn-526 or Arg-517; primer set PBP3-S) and a highly mutated locus (Ser-385; primer set PBP3-BLN) (9, 11, 30). To determine the strain having a ß-lactamase gene, the bla locus was amplified by specific primers (9). To confirm that the isolated pathogen was H. influenzae, the P6 gene was identified (9). Outer membrane protein P6 is a member of the class of outer membrane proteins known as peptidoglycan-associated lipoproteins, which are highly conserved among H. influenzae isolates. To identify the type b H. influenzae strain, the cps b locus, which encodes type b capsular polysaccharides, was examined by PCR (9). A single colony of H. influenzae on chocolate agar plates was lysed in 30 µl of lysis solution (1 M Tris, pH 8.9, 4.5% [vol/vol] NP-40, 4.5% [vol/vol] Tween 20, and 10 mg/ml proteinase K) for 10 min at 60°C and for 5 min at 94°C in a programmable thermal cycler (Gene Amp PCR System 9700; Perkin-Elmer, Norwalk, CT). The reaction mixture (total volume, 50-µl) consisted of 2 µl of bacterial lysate, 0.8 µl of a 10 mM deoxynucleoside triphosphate mixture, 0.1 µl of Taq DNA polymerase, 2.5 µl of 10x PCR buffer, 0.5 µl of 25 mM MgCl2, 5.0 µl Q-solution (QIAGEN, Valencia, CA), and 0.125 µl (100 µM) each of primer and distilled water. The mixture was subjected to denaturation at 94°C for 10 min, followed by 30 cycles of denaturation at 94°C for 30 s, annealing at 55°C for 30 s, and extension at 72°C for 30 s, and then further extension at 72°C for 10 min. The amplified DNA fragments were analyzed using 3% agarose gel electrophoresis. On the basis of the PCR-based genotyping, the H. influenzae strains were classified into four genotypes: genetically ß-lactamase-negative AMP-susceptible (gBLNAS) strains, without amino acid substitutions in the ftsI gene and ß-lactamase (bla) gene; genetically BLNAR (gBLNAR) strains, with an amino acid substitution in the ftsI gene; genetically ß-lactamase-positive ampicillin-resistant (gBLPAR) strains, with the bla gene but without an amino acid substitution in the ftsI gene; and genetically ß-lactamase-positive amoxicillin-clavulanate-resistant (gBLPACR), with the bla gene and an amino acid substitution in the ftsI gene. The gBLNAR strains were further divided into two subgroups: group I/II gBLNAR strains, with an amino acid substitution in the variable mutated locus of ftsI (at Asn-526 or Arg-517), and group III gBLNAR strains, with an amino acid substitution in the highly mutated locus of ftsI (at Ser-385). The strains positive for the bla gene were also further divided into three groups based on amino acid substitutions in the ftsI gene: strains with group I/II amino acid substitutions in the ftsI gene (group I/II gBLPACR), strains with group III amino acid substitutions in the ftsI gene (group III gBLPACR), and strains without amino acid substitutions in the ftsI gene (BLPAR) (Fig. 1). In this study, we have designated PCR-based genotypes gBLNAS, gBLNAR, gBLPACR, and gBLPAR to distinguish them from phenotypes, which are written without the introductory "g."
|
View this table: [in a new window] |
TABLE 1. Oligonucleotide primers used in this study
|
![]() View larger version (70K): [in a new window] |
FIG. 1. PCR-based genotypes of H. influenzae. Lane 1, P6 gene encoding outer membrane protein P6; lane 2, bla; lane 3, pbp3-S; lane 4, pbp3-BLN; lane *, cps b encoding type b capsular polysaccharides. MM, molecular weight marker.
|
|
|
|---|
|
View this table: [in a new window] |
TABLE 2. Sources of clinical isolates of H. influenzae
|
1 µg/ml), 37 (14.3%) intermediately resistant strains (MIC = 2 µg/ml), and 61 (23.5%) resistant strains (MIC
4 µg/ml). Serotype b H. influenzae was identified in only two isolates. The phenotypic and genotypic tests completely agreed as to species level identification, ß-lactamase production, and capsular type. There were no significant differences in the distributions of resistant strains based on gender, age, disease, and type of clinic. PCR-based genotypes and susceptibility to AMP. The prevalence of each PCR-based genotype among the 264 H. influenzae isolates was as follows: 87 (33.0%) were gBLNAS strains, 98 (37.0%) were group I/II gBLNAR strains, 74 (28.0%) were group III gBLNAR strains, 1 (0.4%) was a group I/II gBLPACR strain, 2 (0.8%) were group III gBLPACR strains, and 2 (0.8%) were gBLPAR strains (Table 3). Forty-nine strains (18.6%) had group I/II mutations apparently affecting PBP3, although their AMP MICs were at or below the CLSI susceptible breakpoint. The MIC50s of AMP for the group I/II gBLNAR strains were similar to those for the gBLNAS strains, while the MIC90s of AMP for the group I/II gBLNAR strains were higher than those for the gBLNAS strains. The MIC50s and MIC90s of AMP for the group III gBLNAR strains were 8 times and 32 times higher than those for the gBLNAS isolates, respectively.
|
View this table: [in a new window] |
TABLE 3. Correlation between PCR-based genotyping and susceptibility to AMP
|
|
View this table: [in a new window] |
TABLE 4. Antimicrobial susceptibilities of H. influenzae isolates to other antibiotics according to PCR-based genotypes
|
80%) banding patterns (Fig. 2). Both of these clusters had MICs to AMP of 4 µg/ml and were bla negative. One cluster (cluster A) was made up of a group I/II gBLNAR strain and its related clones, which mostly showed MICs to AMP of 16 µg/ml. Another cluster (cluster B; 100% identical) was a group III gBLNAR strain and its related clones, which mostly showed MICs to AMP of 4 to 8 µg/ml. The last cluster (cluster C) had five isolates, and all shared
80% pattern similarity. In contrast to strains with MICs to AMP of 16 µg/ml, most of strains with MICs to AMP of 4 to 8 µg/ml showed various PFGE patterns (similarity
70%). All of the BLNAR strains in the three clusters were isolated in different clinics and different places in Japan.
![]() View larger version (59K): [in a new window] |
FIG. 2. Genetic identity and/or high relatedness among BLNAR isolates. PFGE dendrogram (unweighted pair group method with arithmetic means) of 61 BLNAR strains (MIC 4 µg/ml). Dice coefficients are shown above the dendrogram. Isolates with 80% relatedness on the dendrogram are considered highly genetically related.
|
|
|
|---|
The detection of BLNAR strains with decreased susceptibilities to ß-lactams is controversial. The CLSI definition of BLNAR strains consists of those strains with no detectable ß-lactamase and with MICs for AMP of 4 µg/ml. Strains with MICs for AMP of 2 µg/ml are defined as having intermediate, or indeterminate, resistance because such strains can show themselves to be susceptible, intermediate, or resistant to AMP if retested another day or by another method. There is no universal consensus concerning the breakpoint of BLNAR, with several different values having been proposed (1, 15). Kim et al. reported antimicrobial susceptibilities by Etest and showed reduced susceptibilities to AMP (256 µg/ml) for BLNAR strains (18). However, the Etest sometimes fails to exhibit the actual MIC, especially for BLNAR strains, while the test is useful to determine the antimicrobial susceptibilities of BLNAS strains (1a). An effort to acquire a genetic understanding of the intricacies of the resistance mechanism led to the development of reliable tests for detecting BLNAS strains. Thus, in this study, we used a PCR-based method to determine H. influenzae genotypes. This method allowed us to evaluate mutations of the ftsI gene, which encodes PBP3. This, in turn, led to a better understanding of the genetic characteristics of the pathogen.
The group I/II gBLNAR strain has mutations at the Asn-526 locus in the ftsI gene. The group III gBLNAR strain has a Thr-385-Ser substitution in the ftsI gene around the SSN motif, in addition to a Lys-526 substitution that mostly affects the increases of MICs (3, 17-19, 22, 31, 36). The Asn-526 locus in the ftsI gene may not affect the PBP3 structure at the ß-lactam binding site and thus may not result in phenotypic amipicillin resistance, whereas the Thr-385-Ser substitution may have a direct effect. The Asn-526 region may not represent a significant mutation site. For PCR-based genotyping, we used primers for the ftsI gene to amplify the variably mutated locus of Asn-526 in BLNAS strains and the highly mutated locus of Ser-385 frequently identified in BLNAR strains (9, 11). We found that the Asn-526 locus can be amplified in BLNAS strains while the highly mutated Ser-385 locus in the BLNAR strains failed to be amplified. On the other hand, the latter locus frequently showed similar mutations among BLNAR strains.
According to the PCR-based genotyping of H. influenzae, gBLNAR strains were highly prevalent in Japan (65.1%), and about 86.9% of gBLNAR strains were classified as group III gBLNAR. About 62.2% of intermediately AMP-resistant strains were also classified as group I/II gBLNAR strains, and about 41.6% of AMP-susceptible strains were classified as group I/II gBLNAR strains. The AMP-susceptible isolates with an amino acid substitution in the ftsI gene have the potential to develop further resistance to penicillin and cephalosporin. Group III gBLNAR strains have been proven to be absent among isolates from European countries. Since 68.4% of group I/II BLNAR strains had AMP MICs of
1 µg/ml in Japan, strains with group I/II substitutions may exist in Europe or the United States but not be recognized because they are phenotypically AMP susceptible. The inappropriate use of oral antibiotics for the treatment of community-acquired bronchopulmonary and URT infections appears to be responsible for the selection for BLNAR strains. The use of antibiotics might be related to the dissemination of gBLNAR strains in Japan. Some group I/II gBLNAR strains show higher MICs to AMP.
We did not evaluate the substitution Arg-517 in the ftsI gene in this study. The substitution in this locus causes an increase of the MIC, but the mutations are varied. Ubukata et al. suggested the necessity of evaluating the sequences of this locus as part of a further investigation of the correlation between genetic mutations and decreasing susceptibilities to antimicrobial agents (36).
We found that some group III gBLNAR strains exhibit a relatively high MIC to AMP (MIC = 32 µg/ml). Kaczmarek et al. suggested that BLNAR strains with mutations of the AcrAB repressor gene arcR can occur clinically and that such dual-target mutants can have higher MICs to AMP (MIC range, 8 to 16 µg/ml) (16). Further precise investigations of those BLNAR strains should be considered in future studies.
Future studies should also examine the dissemination of BLNAR strains. A previous study in the United States found that two BLNAR isolates collected from a single institution were clonal (13). A second study of 29 BLNAR isolates collected in France showed 20 unique SmaI PFGE patterns and suggested limited clonality of the BLNAR strains (8). Karlowsky et al. reported the clonal dissemination of BLNAR strains in hospital settings (17). Recent reports have suggested less clonal dissemination of the BLNAR strains (7). However, these previous reports evaluated BLNAR according to broad MIC ranges. In the current study, the PFGE profiles showed a clonal dissemination among strains with increased resistance to AMP (MIC = 16 µg/ml). There was no significant difference in the distributions of BLNAR strains according to age (data not shown), while penicillin-resistant Streptococcus pneumoniae cases are predominant among young children. Although penicillin-resistant S. pneumoniae shows clonal dissemination worldwide, most of the BLNAR strains in Japan are classified into nonencapsulated, nontypeable strains. In contrast to the encapsulated strains, the nonencapsulated BLNAR strains are genetically diverse and occasionally appear independently in countries, depending on the antibiotic use patterns. Selective pressures, such as frequent prescription of antibiotics, especially consumption of oral cephems, may be the impetus for the clonal dissemination of BLNAR strains. The dissemination patterns of nontypeable H. influenzae infections caused by BLNAR strains might be different from those of S. pneumoniae.
In conclusion, there is an alarming increase in Japan in the occurrence of BLNAR strains with mutations of the ftsI gene. The resistant H. influenzae pathogen will disseminate in different ways than penicillin-resistant S. pneumoniae. Consequently, we need to continue careful surveillance for BLNAR strains of H. influenzae in patient populations and continue our efforts to understand why these antibiotic-resistant strains are becoming more prevalent. PCR-based genotyping and study of molecular characteristics bring us useful information to continue our surveillance of this resistant pathogen.
This study was supported by the Japanese Ministry of Education, Culture, Sports, Science and Technology (grants no. 17591797 and 17791194).
Published ahead of print on 13 August 2007. ![]()
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2010 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»