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Antimicrobial Agents and Chemotherapy, May 2007, p. 1719-1724, Vol. 51, No. 5
0066-4804/07/$08.00+0 doi:10.1128/AAC.01531-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

David J. Clarke,2
Ross J. Langley,3
Tali Pechenick,2
Adrian Hill,2
Dominic J. Campopiano,2
Perdita E. Barran,2
Julia R. Dorin,1* and
John R. W. Govan3
Medical Research Council Human Genetics Unit, Western General Hospital, Edinburgh EH4 2XU, Scotland, United Kingdom,1 School of Chemistry, University of Edinburgh, West Mains Road, Edinburgh EH9 3JJ, Scotland, United Kingdom,2 University of Edinburgh Medical School, Little France Crescent, Edinburgh EH16 4SB, Scotland, United Kingdom3
Received 6 December 2006/ Returned for modification 26 January 2007/ Accepted 5 March 2007
| ABSTRACT |
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| INTRODUCTION |
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ß-Defensins are cysteine-rich, cationic peptides displaying important roles within the mammalian innate immune system (6). In vitro and in vivo studies have confirmed that defensins have potent broad-spectrum bactericidal activity and suggest that bacterial resistance may have coevolved with, and influenced the diversity of, antimicrobial peptides (2, 8, 11). In addition, ß-defensins have been shown to act upon T lymphocytes and immature dendritic cells playing key roles in the adaptive immune response (19). ß-Defensins produced as propeptides are processed to a mature secreted peptide, which contains six canonical cysteine residues (cys1-cys5, cys2-cys4, cys3-cys6) with specific spacing and intramolecular disulfide connectivity (18). These are distinct from the disulfide connectivities displayed by the similar
-defensins (17). The mature ß-defensins are 30 to 45 amino acids in length and are amphipathic, containing discrete cationic and hydrophobic areas.
A mechanism for defensin binding and disruption of bacterial membranes is the subject of intensive study (12). Active peptides have been shown to display an appropriate balance of hydrophobicity and net positive charge (5). The conserved disulfide bridges impose a structural core composed of ß-sheets, and nonconserved residues on the surface are subject to selective pressure against rapidly evolving bacteria (10, 14). In direct contrast to the perceived structure-function relationship(s), however, it has been reported that antimicrobial activity is independent of intramolecular disulfide bridging (18).
Recently we described a murine ß-defensin gene present in C57BL/6 mice that encoded a peptide with only five cysteine residues (Table 1) (9). This peptide (Defr1) displays a tyrosine in place of the first cysteine and yet still retains potent antimicrobial activity against gram-positive and gram-negative organisms. The gene is a variant allele of Defb8 which encodes six cysteines and is present in all the other inbred murine strains we have tested. A synthetic analogue of Defr1 (Defr1 Y5C) in which the tyrosine is restored to a cysteine exists as a noncovalent homodimer formed by monomers with ß-defensin connectivity but displays poor antimicrobial activity (3). In contrast, we found that synthetic Defr1 was a mixture of isoforms with variable disulfide connectivities but that each isoform contained a single intermolecular S-S bond. We found that the antimicrobial activity was influenced by the covalent dimeric structure imposed by this novel defensin motif (3).
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| MATERIALS AND METHODS |
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Antimicrobial assays. Test organisms were grown to midlogarithmic phase in Iso-Sensitest broth (Oxoid) growth media and then diluted to 1 x 106 to 5 x 106 CFU/ml in 10 mM potassium phosphate containing 1% (vol/vol) Iso-Sensitest broth, pH 7.4. Different concentrations of test peptide were incubated in 100 µl of cells (1 x 105 to 5 x 105 CFU) at 37°C for 3 h. Reduction of the peptides, where performed, was done by adding 10 mM DTT and incubating at room temperature overnight. The oxidation state of each peptide was determined by mass spectrometry. Serial dilutions (10-fold) of the incubation mixture were spread on Iso-Sensitest plates and incubated at 37°C, and the CFU levels were determined the following day. The minimum bactericidal concentration (MBC) is the concentration of peptide at which we observed >99.99% killing of the initial inoculum. All assays were performed in triplicate on three independent occasions. The MBC was obtained by taking the mean of all results, and experimental errors were within one doubling dilution.
The effect of salt on antimicrobial activity was tested by incubating 100 µl of 1 x 105 CFU of P. aeruginosa PAO1 in 10 mM potassium phosphate-1% (vol/vol) Iso-Sensitest (pH 7.4), which contained various concentrations of NaCl (0 to 200 mM). The bacteria were then challenged with peptide at various concentrations (doubling dilutions from 0 to 150 µg/ml), and the MBC for each concentration was determined.
Defr1 fractionation-HPLC. Preparative reverse-phase HPLC for this study was performed by CSS Albachem Ltd. The peptide was fractionated with a gradient of 20% to 30% acetonitrile over 60 min on a Jupiter C5 Semi-Prep column (Phenomenex, Macclesfield, United Kingdom) (250 by 10 mm) at a flow rate of 5 ml/min. Fractions (5 ml) (i.e., 1 min) were collected throughout the region of interest in order to sample across the chromatographic peak (data not shown). The fractions were lyophilized, weighed, and resuspended in water to give solutions of 1 mg/ml.
Gel electrophoresis. Electrophoresis of Defr1, Defr1 fractions, and Defr1-1cys was performed under reducing and native, nonreducing conditions. Peptide (2.5 µg) was dissolved in 2.5 µl of 0.01% acetic acid-5 µl of 2x sample buffer (Novex Tricine-sodium dodecyl sulfate sample buffer LC1676). Reduction of samples was performed by adding 10 mM of NuPAGE sample-reducing agent (Invitrogen NP0004) and incubating at room temperature for 1 h. The entire sample was loaded on a 16% Tricine gel (Invitrogen). The gel was fixed and stained with Coomassie blue stain.
Mass spectrometry. All data were taken on a Q-ToF mass spectrometer (Micromass) fitted with a nanoelectrospray source. Nanospray tips were pulled using a Sutter P97 tip puller with a voltage applied through a short length of platinum wire. Samples were prepared at 10 µM in 1:1 MeOH/H2O-0.1% formic acid.
Analytical HPLC data. Peptides were separated on a Phenomenex Jupiter C5 column (250 by 2 mm) with a 20% to 30% acetonitrile gradient over 60 min at 0.2 ml/min by use of a Waters 2795 LC system attached to a Micromass Platform II mass spectrometer. Synthetic Defr1 was prepared at 20 µM in 1:1 MeOH/H2O, with a total injection of 40 µl.
| RESULTS |
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In order to determine whether any particular fraction of the Defr1 preparation contained a more active isoform, we resynthesized Defr1 and attempted to resolve the isoforms by separation using reverse-phase HPLC and a shallow elution gradient. We collected 14 5-ml fractions, and each was lyophilized, analyzed by native gel electrophoresis on a 16% Tricine gel (Fig. 1 upper panel), and subsequently tested for antimicrobial activity against the P. aeruginosa type strain PAO1.
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5 to 13 kDa on the 16% Tricine gel, perhaps due to the presence of different isoforms within the sample, a phenomenon we had observed previously (3). Fractions 2, 9, and 13 were selected due to their noticeably different mobilities and were subjected to electrospray ionization mass spectrometry analysis (Fig. 1, lower panel) and in the reduced form after treatment with DTT (data not shown). The ion series results were essentially identical for all fractions, with each peptide producing a series of ions of similar charges and intensities (between [M + 7H]7+ and [M + 10H]10+). The deconvoluted mass measured for each fraction is consistent with the theoretical mass (7,567.0 Da), suggesting that each contained a fully oxidized Defr1. This mass analysis revealed that despite apparent mobility differences on the native, Tricine gel, the three fractions chosen were all dimeric forms of the peptide, with masses which corresponded to a state in which all of their cysteines are oxidized, i.e., representing a fully disulfide-bridged, dimeric peptide, where the dimer is formed via an intermolecular disulfide bridge. All of the fractions displayed LC profiles similar to that of the unfractionated parental Defr1 (data not shown); combined with the heterogeneity observed in the gel electrophoresis profile across the elution gradient, this suggests that the Defr1 mixture is complex and difficult to resolve. Each of the 14 fractions in Fig. 1 was tested for antimicrobial activity, and each had an MBC of 6 µg/ml, which is the same as that of the parental preparation of Defr1. Treatment of the peptide fractions with excess DTT resulted in the loss of the dimer structure (confirmed by mass spectrometry; data not shown) and a corresponding marked decrease in antimicrobial activity to an MBC greater than 50 µg/ml (Fig. 2 and 3).
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Defr1-1cys displays antimicrobial activity identical to that of Defr1 against the panel of organisms tested. Only the gram-negative strain B. cenocepacia J2315 was not killed at a low MBC. Again upon reduction in the presence of DTT, the dimer structure of Defr1-1cys was lost (Fig. 3) and the antimicrobial activity was diminished (Table 2).
The salt sensitivity of Defr1 is unusual, as this cationic peptide's antimicrobial action against P. aeruginosa is largely insensitive to salt concentration levels. The salt sensitivity of Defr1-1cys was also tested and was found to be equivalent to that previously reported for Defr1 (3, 9). In NaCl-free conditions, the MBC was 6 µg/ml. At 50 and 100 mM NaCl, 25 µg/ml of Defr1-1cys peptide effectively killed the 105 bacteria in the MBC assay. At 150 mM and 200 mM NaCl, 50 µg/ml of the single cysteine peptide was required to kill the bacteria.
| DISCUSSION |
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Defr1 is shown here to express potent antimicrobial activity against a range of bacterial pathogens, including multidrug-resistant nosocomial isolates; the exceptions are B. cepacia and B. cenocepacia, which are characteristically resistant to antimicrobial peptides. In comparison, Defr1 Y5C, the peptide analogue which retains the canonical ß-defensin connectivity (cys1-cys5, cys2-cys4, cys3-cys6) and has been shown previously by mass spectrometry analysis not to be a covalent dimer (3), displays poor antimicrobial activity against the same panel of organisms.
Synthetic Defr1 has been shown previously to exhibit various disulfide connectivities (3). In an attempt to identify active fractions, samples from a reverse-phase HPLC column were collected, analyzed by native gel electrophoresis, and investigated for antimicrobial activity. All fractions displayed visibly different but similar band intensities on a Tricine gel (Fig. 1, upper panel) and yet retained antimicrobial activities equivalent to that seen with the unfractionated Defr1. Further analysis of fractions 2, 9, and 13 was conducted due to their noticeable mobility differences on gel electrophoresis. Analysis by mass spectrometry showed that all fractions possessed a dominant molecular species which had a mass corresponding to a covalently bound dimeric form of the Defr1 peptide (Fig. 1, lower panel), although some small additional peaks in each fraction were present due to synthetic impurities and nonspecific adducts formed in the electrospray process. LC analyses of the synthetic Defr1 and of resolved fractions from it resulted in chromatograms which exhibit very close correlation (data not shown). Their chromatographic profiles also resemble that observed with our first batch of synthetic Defr1 (data not shown).
Upon reduction of both the fractions and the parental preparation of Defr1, antimicrobial activity was greatly reduced (Fig. 2 and reference 3), indicating that a covalent dimeric structure is necessary for the potent antimicrobial function associated with the Defr1 sequence. This is supported by the fact that the noncovalent dimer Defr1 Y5C with ß-defensin connectivity displays poor antimicrobial activity even in the oxidized form (3).
Studies of the relationship between the structure and function of defensins have begun to appear. For example, Pazgier et al. (12) have shown that the antimicrobial activity of fully oxidized ß-defensin HBD1 against E. coli is dominated by cationic residues at the C terminus of the peptide. In an earlier study, Wu et al. had demonstrated that a linear isomer of HBD3 (where all the cysteines had been replaced with
-aminobutyric acid, so these residues of the isomer were unable to form disulfide bonds) still retained its antimicrobial activity against a panel of pathogens (18). Interestingly, de Leeuw et al. reported that killing of E. coli by
-defensin HD5 is independent of the peptide structure whereas the activity against S. aureus is structure dependent (4). It appears that it is difficult to explain the bactericidal properties of individual defensins against specific pathogens solely based on their primary structures.
In the work presented here, the hypothesis that the antimicrobial activity of Defr1 appears to depend on covalent dimerization of the molecule was confirmed by the activity of Defr1-1cys. In this peptide, every cysteine except the penultimate one is replaced with an alanine residue (Table 1). Importantly, this molecule also forms a disulfide-linked dimer and displays very similar antimicrobial activity, which is diminished in the reduced, monomeric from. A similar phenomenon was also observed in the naturally-occurring Sushi 3 peptide derived from the Sushi 3 domain of Factor C, the lipopolysaccharide-sensitive serine protease of the horseshow crab coagulation cascade (7). The antimicrobial peptides of the Sushi peptide (34 amino acids, with a single cysteine) were shown to be due to its interaction with lipopolysaccharide and correlated directly with its ability to form a single S-S dimer.
Charge and hydrophobicity have been shown previously to be important in the antimicrobial function of HBD3 derivatives (5). However, the different antimicrobial activities of Derf1 and Defr1-1cys versus Defr1 Y5C are not easily explained by simple differences in their physical properties, since all three peptides have similar charge and hydrophobicity characteristics (Table 1). The three peptides Defr1, Defr1 Y5C, and Defr1-1cys have a cationic charge of +12 in the dimeric form, and they share similar hydrophobic scores (1.92, 3.13, and 3.56 kcal mol1, respectively) on a scale which measures the partitioning of peptides at a membrane to aqueous-phase interface. Common to Defr1 and Defr1-1cys and absent in Defr1 Y5C is a covalent intermolecular S-S bond which appears to be the governing factor in imparting potent bactericidal activity for these peptides.
Synthetic peptides based on the Defr1 ß-defensin sequence are antimicrobially potent even in the absence of the canonical cysteine motif in a covalent, dimeric form. The mode of action, toxicity, and in vivo efficacy of this naturally occurring murine AMP remain to be determined. However, our results suggest that further studies of these novel peptide antibiotics containing this simple S-S structural motif may provide a source of optimized dimers capable of killing multiresistant pathogens.
| ACKNOWLEDGMENTS |
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We thank Bob Bateman and Waters Micromass Technologies and the British Mass Spectrometry Society. We thank both Nick Hastie for his enthusiasm for this project and Pat Langridge-Smith.
We have no financial or other relationships that present a conflict of interest with respect to this study.
| FOOTNOTES |
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Published ahead of print on 12 March 2007. ![]()
Current address: The Michael Barber Centre for Mass Spectrometry, The Manchester Interdisciplinary Biocentre, Manchester, M1 7DN, United Kingdom. ![]()
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