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Antimicrobial Agents and Chemotherapy, June 2007, p. 2028-2034, Vol. 51, No. 6
0066-4804/07/$08.00+0 doi:10.1128/AAC.01284-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Istituto di Genetica Molecolare, Consiglio Nazionale delle Ricerche, 27100 Pavia, Italy,1 GLSynthesis Inc., Worcester, Massachusetts 01605,2 Department of Veterinary Pathobiology, Center for Veterinary Health Sciences, Oklahoma State University, Stillwater, Oklahoma 74078,3 Department of Microbiology and Immunology, College of Medicine, University of South Florida, Tampa, Florida 33620,4 Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 02-106 Warsaw, Poland5
Received 13 October 2006/ Returned for modification 27 December 2006/ Accepted 2 March 2007
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Although BV is highly lethal in humans, the infrequency of human BV infections has not encouraged development of drugs specifically targeted to this virus. However, the extreme severity of BV infections makes this virus the primary zoonotic concern for persons working with macaques. Acyclovir (ACV), a drug widely used to treat herpes simplex virus (HSV) infections, is currently recommended for treatment of BV infections as well (3). However, BV is about 10 times less susceptible than HSV is to ACV and the related drug ganciclovir (GCV) (1, 3). No studies have examined the comparative sensitivity of BV to other antiherpes drugs, nor has the molecular basis of the lower susceptibility of BV to ACV or GCV been studied. With the increasing use of rhesus monkeys in biomedical research and the accompanying potential for more human BV infections, identification of antiviral drugs that are more effective in controlling BV infections is warranted.
Most of the antiherpes drugs used clinically or experimentally against human herpesviruses (HSV type 1 [HSV-1], HSV-2, varicella-zoster virus, and cytomegalovirus) are nucleoside analogs that are activated in infected cells by virus-encoded thymidine kinase (TK). Ultimately, the analogs are metabolized to the triphosphate form that is incorporated into the replicating viral DNA by the viral DNA polymerase, causing chain termination (reviewed in reference 20). Interestingly, HSV TKs are not stereoselective, being able to phosphorylate both enantiomers of thymidine (TdR) and other TdR analogs. Some inhibitors of the HSV TKs have been shown to block reactivation of latent HSV in animal models (21). Identification of drugs having a similar activity against BV would be of great value in treating human BV infections. This work was undertaken to study the properties of the key BV enzymes involved in DNA replication of the virus and to use their unique properties to find or design potential drugs to treat BV infections in humans. In this paper we focus on BV TK and report its relevance to the sensitivity of BV to various antiherpes drugs.
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Chemicals.
Analytical-grade reagents were used exclusively. Bacterial medium components were from Difco, and Ni-nitrilotriacetic acid (Ni-NTA) Superflow resin was from QIAGEN. Restriction and modification enzymes were from Promega, Sigma, or Roche. Isopropylthio-ß-D-galactoside (IPTG) was from Sigma, and [3H]thymidine, 20 Ci/mmol, was from New England Nuclear. The acyclonucleosides ACV, GCV, and pencyclovir (PCV), the thymidine analogs 5-iodo-2'-deoxyuridine (IUdR), 5-trifluoromethyl-2'-deoxyuridine (TFT), and E-(5-bromovinyl)-2'-deoxyuridine (BVdU), and foscarnet (PFA) were available commercially. Cidofovir (CFV) was a gift from Gilead Sciences Inc. Authors contributed the following experimental compounds: 9-(4-hydroxybutyl)guanine (HBG), 9-(4-hydroxybutyl)-N2-phenylguanine (HBPG), and related TK inhibitors (G. E. Wright) (13, 22); 5-ethyl-2'-deoxyuridine (Et-dU,
and ß anomers) and ß-5-propyl-2'-deoxyuridine (Pr-dU) (D. Shugar) (5, 18); L-thymidine (L-TdR), L-5-iodo-2'-deoxyuridine (L-IUdR), and L-E-(5-bromovinyl)-2'-deoxyuridine) (L-BVdU) (F. Focher) (16, 17). Structures of compounds used in this work are shown in Fig. 1.
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FIG. 1. Structures of nucleosides and related compounds referred to in this work.
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FIG. 2. Alignment of BV and HSV-1 TK sequences. Amino acids constituting the ATP and the nucleoside binding sites are indicated, and all residues that are conserved between HSV-1 and all BV isolates are highlighted in gray. Residues that differ between the cynomolgous and rhesus BV sequences are indicated by black triangles under the sequences. The 10 amino acids (residues 270 to 279) deleted in the mutant recombinant BV TK referred to in the text are indicated by a black bar under the sequences.
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FIG. 3. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of the affinity-purified recombinant BV TK. Lanes: M, molecular mass markers; BV-TK, 6 µg of recombinant TK eluted from the Ni-NTA column (98% pure by densitometry [see Materials and Methods]).
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TK substrate assay. When nucleoside analogs were tested as possible substrates of BV TK, each compound (100 µM) was incubated at 37°C for 0, 10, 20, 30, and 40 min in a mixture (25 µl) containing 30 mM HEPES K+, pH 7.5, 6 mM MgCl2, 6 mM ATP, 0.5 mM DTT, and the required amount of enzyme. Samples were then heated at 100°C for 5 min and centrifuged for 15 min at 10,000 rpm in an Eppendorf bench centrifuge. Supernatants were transferred to a new tube for subsequent high-performance liquid chromatography (HPLC) analysis. The reverse-phase chromatography method used to separate nucleosides from nucleotides employed a Shimadzu HPLC system, consisting of an ALLTIMA C18-NUC 100A 5U column (4.6 mm x 25 cm) (Alltech) at room temperature under the following conditions: injection volume, 20 µl; detection, UV 260 nm; eluents of the linear gradient, buffer A (20 mM KH2PO4, pH 7.5) and buffer B (20 mM KH2PO4, pH 5.2, 60% methanol); elution time, 40 min from 0% to 100% buffer B; and flow rate, 0.5 ml/min. Two independent experiments were performed in which each point was run in duplicate. Enzyme activity was linear up to 40 min. Percentage values were calculated by analysis of the UV peak areas eluted from the column by using the Shimadzu class VP chromatography data system 4.3.
Antiviral assays. Virus stocks were diluted in cold DMEM containing 2% FBS, and six-well trays containing confluent monolayers of Vero cells were infected with 200 µl/well of virus (to yield 150 to 200 PFU/well). Drugs were dissolved in DMSO at 10 mg/ml and diluted in overlay medium (DMEM containing 2% FBS and 0.25% methylcellulose). After 1 h of adsorption at 37°C, the viral inoculum was removed, and cells were overlaid with 2.5 ml of medium. Each drug concentration was tested in duplicate wells. Plates were incubated at 37°C for 36 to 48 h, and plaques were counted. The percent plaque reduction was calculated based on the number of plaques obtained in the absence of drugs.
Cytotoxicity assays. Drugs were dissolved in DMSO and threefold serially diluted (200 to 0.1 µg/ml) in growth medium, DMEM supplemented with 10% fetal calf serum, containing 2.5 µCi/ml of [methyl-3H]TdR (25 Ci/mmol; Amersham). Each drug was assayed in three independent experiments. The 15% confluent Vero cells were incubated in 5% CO2/95% air at 37°C for 2 days, and cells were collected with an automated cell harvester onto fiberglass filters. Trichloroacetic acid (10%) was added to digest the cells, and trichloroacetic acid-precipitable counts were determined in a scintillation counter. Mean control incorporation into DNA was 3,720 ± 331 cpm.
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Kinetic properties of recombinant BV TK. In order to determine the Km and Vmax of BV TK, we assayed a limiting amount of enzyme with several concentrations of [3H]TdR and the reaction velocity V was determined at each substrate concentration. Figure 4 shows the kinetics of TdR phosphorylation by recombinant BV TK. Analysis revealed that the enzyme had Km and Vmax values for TdR of 0.7 µM and 0.2 nmol/h/µg, respectively (see also Table 3). The Km value of 1 µM for recombinant HSV-1 TK was similar (13), but the specific activity of the HSV-1 enzyme was higher (17 nmol/h/µg; F. Focher, unpublished results) than the value for BV TK.
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FIG. 4. Kinetics of BV TK activity in the presence of increasing concentrations of [3H]TdR. Under the assay conditions described in Materials and Methods, enzyme velocity of 2,200 cpm/20 min corresponds to 0.2 nmol of TdR transformed to TMP in 1 h by 1 µg of enzyme.
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TABLE 3. Kinetic properties of phosphorylation of substrates by BV TKa
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TABLE 1. Effects of nucleoside analogs on BV TK activity (IC50)a
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anomer of Et-dU, did not inhibit BV TK at 100 µM (not shown). Substrate properties of nucleosides and analogs. The recombinant BV TK enzyme was also used to evaluate whether it was able to phosphorylate various nucleoside derivatives and acyclonucleosides (Table 2), which could then be considered possible antiviral drugs. The possible substrates ACV, GCV, CFV, PCV, TFT, IUdR, BVdU, and HBPG were incubated at both 0.1 and 1 mM with excess BV TK. Reaction mixtures were analyzed by reverse-phase HPLC, and UV peak areas of starting compound and putative phosphorylated product were used to determine the kinetics of phosphorylation, if any. Under assay conditions which resulted in the complete phosphorylation of TdR to its monophosphate TMP, the compounds TFT, PCV, IUdR, BVdU, and HBPG were phosphorylated with different efficiencies (Fig. 5), but ACV, GCV, and CFV were very poorly or not phosphorylated under these conditions (data not shown). Interestingly, the HSV TK inhibitor HBPG was very efficiently phosphorylated with a Km of 7.4 µM and a Vmax of 3.9 nmol/h/µg. Table 3 shows the kinetic properties of HBPG compared with those of the natural substrate TdR. Comparison of Vmax/Km ratios, which estimate the efficiency of phosphorylation, indicate that BV TK phosphorylated HBPG with an efficiency 1.8 times greater than for TdR.
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TABLE 2. Phosphorylation of nucleoside analogs (100 µM) by BV TKa
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FIG. 5. Kinetics of phosphorylation of nucleoside analogs by BV TK. Panel A shows 100 µM TdR (), HBPG ( ), IUdR ( ), BVdU ( ), and Et-dU ( ). Panel B shows 1 mM TdR (), PCV ( ), HBG ( ), and Pr-dU ( ). Each nucleoside analog was incubated for the indicated time in the assay mixture described in Materials and Methods, and the products of the reaction were resolved by HPLC as described in Materials and Methods (100% corresponds to 2.5 nmol of substrate converted to monophosphate).
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Antiviral activity in Vero cell cultures. Plaque reduction assays were conducted in Vero cells infected with several strains of BV and, for comparison, with HSV-1. Strains of BV included 24105 and E90-136, both neuropathogenic in mice, and 32425, a strain that is nonpathogenic in mice, and the F strain of HSV-1. Duplicate cell cultures were infected with 150 to 200 PFU of virus for 1 h and then overlaid with medium containing various concentrations of the drug (or vehicle). The plaque morphology of BV varied with the drug concentration, making the quantitation of drug sensitivity difficult to assess. With increasing drug concentrations, the first effect noted was a decrease in plaque size. At higher drug concentrations, the characteristic syncytial activity of BV was inhibited, resulting in small clumps of rounded cells. For the purpose of these studies, foci of viral cytopathic effect were counted as plaques only if there was an area of clearing (cell lysis); the size of the plaque was not considered. Percent reduction of virus plaque formation was determined after 36 to 48 h of incubation at 37°C. For comparison, cytotoxicity in uninfected Vero cells was determined by measuring [3H]TdR incorporation by the DNA of proliferating cells. Approximate values of antiviral 50% effective concentration (EC50) and cytotoxic concentration of drug that reduced cellular DNA synthesis by 50% (CC50) of tested compounds are listed in Table 4.
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TABLE 4. Plaque reduction in BV-infected and HSV1-infected Vero cells and cytotoxicity in uninfected Vero cells by nucleoside analogs
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The acyclonucleosides ACV and GCV were about 10-fold weaker against BV than against HSV-1, as previously reported (1, 3). Their weaker activity is consistent with, although not completely explained by, their lack of observed substrate sensitivity toward BV TK (Table 3). PCV, the methylene isostere of GCV (see structures in Fig. 1), was only three- to fourfold weaker against the BV strains than against HSV-1 (Table 4), an observation consistent with the efficient phosphorylation of PCV by BV TK (Table 3). PCV was reported to have an affinity to HSV-1 TK similar to that of TdR, although it was phosphorylated at only 9% of the rate for TdR at 250 µM (11). Does this simple change in structure give rise to this difference in properties of O-containing and CH2-containing 9-substituted guanines? A similar parallel at the level of TK was observed between HBG, the methylene isostere of ACV, and ACV itself. HBG, a compound with weak anti-HSV activity and a weak substrate for HSV-1 TK (10), was an efficient substrate for BV TK (Table 3).
Other anti-HSV drugs testedCFV, PFA, and araAhad similar activity against the BV strains and HSV-1. The TK inhibitor/substrate HBPG was inactive against both viruses.
Cytotoxicity was noted with thymidine analogs that are expected to be phosphorylated by the host TK (TFT and IUdR) and by araA (Table 4). Other TdR analogs and acyclonuceosides had little cytotoxic effect between 600 and 1,000 µM (Table 4), including the close substrate relative Et-dU.
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Results of anti-BV testing generally paralleled the results of BV TK testing (Table 4). The thymidine analogs IUdR, TFT, and Et-dU were especially potent anti-BV compounds, although the first two compounds were also cytotoxic. Nucleoside analogs that were not phosphorylated had weaker activity (ACV and GCV) or lacked anti-BV activity (BVdU) compared to their potency against HSV-1. One exception was the phosphonate CFV, which was a moderately potent antiviral, probably because it bypasses the phosphorylation step. PFA and HBPG were weak anti-BV compounds, weaker even than their activity against HSV.
The most potent anti-BV compounds iododeoxyuridine (IUdR) and TFT are not suitable development candidates for BV infections. IUdR and TFT have been used topically for HSV keratitis but are too toxic for systemic use because they are nonselectively phosphorylated by viral and host cell TKs and have significant cytotoxicity (Table 4). araA is both a potent antiviral and cytotoxic compound. CFV, although also a potent antiviral drug with a broad spectrum of activity, has limitations; it is available only as an intravenous formulation and can be nephrotoxic if multiple administrations are needed for therapeutic use.
The most promising anti-BV compounds that we have identified are Et-dU and PCV. Et-dU is equal to or more potent than the currently recommended drug ACV, and its potency is comparable to the potency of GCV (Table 4). Et-dU has been marketed in the past (in Europe and Canada) as a topical treatment for ocular herpes infections. A summary of its clinical pharmacology suggests that it is a relatively nontoxic but highly efficacious antiherpes drug (4, 7). Its high water solubility may make it a prime candidate for testing against BV encephalitis, and it may also warrant a second look as treatment for HSV encephalitis. PCV is currently marketed as a topical drug, although its diacetylated, 6-deoxy prodrug form famciclovir is available for systemic use.
Published ahead of print on 6 April 2007. ![]()
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wierkowski, M., and D. Shugar. 1969. A nonmutagenic thymidine analog with antiviral activity: 5-ethyldeoxyuridine. J. Med. Chem. 12:533-534.[CrossRef][Medline]
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