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Antimicrobial Agents and Chemotherapy, February 2008, p. 505-512, Vol. 52, No. 2
0066-4804/08/$08.00+0 doi:10.1128/AAC.00504-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

The Rockefeller University, 1230 York Avenue, New York, New York 10021
Received 13 April 2007/ Returned for modification 2 July 2007/ Accepted 15 November 2007
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Strain COL is one of the MRSA strains in which the level of β-lactam resistance is extremely temperature dependent: preliminary tests showed that growth of COL at 42°C, which caused a nearly 100-fold decrease in the methicillin MIC, caused only a minor reduction in the transcription of mecA. In the studies described here, we used strain COL as a model to better understand the mechanism of the temperature sensitivity of antibiotic resistance.
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View this table: [in a new window] |
TABLE 1. Laboratory derivatives of strain COL and plasmids
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Isolation of total RNA and Northern blot hybridization.
Overnight cultures were inoculated into fresh TSB where they were grown to mid-log phase (A620
0.6). Before being harvested, bacterial cells were stabilized for 10 min with RNAprotect bacteria reagent (Qiagen Gmbh, Hilden, Germany), and RNA was extracted by using a FastRNA Blue isolation kit (Bio 101, Vista, CA) according to the manufacturer's recommendations. After the concentration was adjusted with a GeneQuant spectrophotometer (Pharmacia), RNA samples (5 µg) were resolved by electrophoresis on 1.2% agarose-0.66 M formaldehyde gels in morpholinepropanesulfonic acid running buffer. Blotting of RNA onto a Hybond N+ membrane (Amersham, Arlington Heights, IL) was performed with the Turbo Blotter neutral transfer system (Schleicher & Schuell, Keene, NH). For detection of transcripts, DNA probes corresponding to internal fragments of particular gene, amplified by using the GeneAmp PCR reagent kit with AmpliTaq DNA polymerase (Perkin-Elmer) and purified by using the QIAquick PCR purification kit (Qiagen), were labeled with [
-32P]dCTP by the random prime method using a Ready-to-Go labeling kit (Amersham) and hybridized under high-stringency conditions. The blots were subsequently washed and autoradiographed.
Mutagenesis and selection of Tn551 mutants. The transposition experiment and selection of mutants were performed as described before (9). The parental strain COL harboring the thermosensitive plasmid pRN3208 (carrying Tn551 with an erythromycin resistance determinant) was grown overnight at 30°C and then diluted and plated at different concentrations on TSA containing erythromycin (100 µg/ml). The plates were incubated at 42°C for 76 h. The approximate frequency of transposon insertion was 3 x 10–5. In order to cure cells from residual plasmid, bacteria were cultured for 48 h at 42°C. Only erythromycin-resistant and cadmium-susceptible colonies were used for further study.
Screening for mutants with altered methicillin resistance. The erythromycin-resistant, cadmium-sensitive colonies were tested sequentially in three stages. In the first screen, all colonies were streaked onto TSA plates containing erythromycin (10 µg/ml) and different concentrations of methicillin (0, 25, 50 and 100 µg/ml). Strain COLpRN3208 was used as control. In the second screen, colonies that seemed to have altered methicillin resistance were grown overnight in TSB with erythromycin (10 µg/ml), diluted (10–2), and tested on TSA plates containing a 1.0-mg methicillin disk. After 24 h of incubation at 42°C the halos of inhibition were measured. After this preliminary testing for altered resistance, a third screen was used to more precisely determine the methicillin resistance phenotype of mutants by using population analysis (26).
Transductional crosses and analysis of transductants.
Transductional crosses were performed with phage 80
as described previously (20) using as a recipient the parental strain COL (cured from the plasmid pRN3208) and as a donor the newly isolated transposon mutant COL245. Transductants were selected on plates that contained erythromycin at a final concentration of 10 µg/ml. From the cross, 25 transductants were tested for increased levels of methicillin resistance by the 1.0-mg methicillin disk method. Eventually, two transductants were selected for testing by PAP analysis for their antibiotic resistance phenotypes.
Peptidoglycan preparation and analysis. Cell wall peptidoglycan was prepared, and muropeptide composition of peptidoglycan was analyzed by reversed-phase high-performance liquid chromatography (HPLC) as described previously (7), except that the alkaline phosphatase step was omitted.
Autolysis assay. Triton X-100-stimulated autolysis in glycine buffer (pH 8.0) was measured as previously described (8). Cells were grown exponentially to an absorbance at 620 nm (A620) of about 0.3. The cultures were then rapidly chilled, and the cells were washed once with ice-cold distilled water and suspended to an optical density at 620 nm of 1.0 in 50 mM glycine buffer supplemented with 0.01% Triton X-100. Autolysis was measured during incubation at 37°C as the decrease in A620 by using a model 340 spectrophotometer (Sequoia-Turner Corp., Mountain View, CA).
DNA methods. Chromosomal DNA preparation and manipulations were performed by standard methods (4). Restriction enzymes were used as recommended by the manufacturer (New England Biolabs, Beverly, MA). DNA sequencing was done at the Rockefeller University Protein/DNA Technology Center by the BigDye terminator cycle sequencing method with either a 3700 DNA analyzer for capillary electrophoresis or ABI Prism 377 DNA sequencers for slab gel electrophoresis.
Sequencing and identification of Tn551 inactivated region. Inverse PCR was performed to isolate DNA region flanking the Tn551 insertion site, as previously described (28).
The chromosomal DNA preparations were digested with HindIII to completion. The self-ligation of the HindIII digests was performed at a DNA concentration of 2 µg/ml overnight at 4°C, and the ligation mixture was then used as a template DNA for PCR amplification. The primer pairs were the same as described before (11). DNA sequencing was performed at the Rockefeller University Protein/DNA Technology Center with the Taq fluorescent dye terminator sequencing method using a Perkin-Elmer/Applied Biosystems model 377 automated sequencer. The obtained open reading frames and deduced amino acid sequences were analyzed with DNASTAR software and compared to the known peptides from the TIGR (The Institute for Genomic Research) and GenBank databases by using the BLAST algorithm.
Sequence analysis of smr1 (TIGR COL locus SA0501). Based on the preliminary sequence obtained, DNA fragments containing smr1 (for suppressor of methicillin resistance) were amplified from the chromosomal DNA of the parental strain COL by using the primers KS-smr-F0 (5'-TGGCGC AAC ACT ATC CTT-3') and KS-smr-R0 (5'-TTC GGG TCC CAA TGT ATG A-3') under the following conditions: 94°C for 5 min, followed by 30 cycles of 94°C for 30 s, 52°C for 30 s, and 72°C for 4 min, with a final extension step of 72°C for 6 min.
Complementation of mutant C245. A 2.6-kb fragment containing smr1 was amplified from the COL chromosome with the primers KS-smr-XbaI-PF (5'-GTA TCA CTG TCT CTA GAG CAC CAA AGG AAA AG-3'; underlined letters indicate the introduced restriction site) and KS-smr-PR (5'-CTG ACG CGG ACC CTA TGC CTG TAT TA-3') using a High-Fidelity PCR System (Roche Diagnostics, Indianapolis, IN). The amplified smr1 fragment and shuttle vector pGC2 were digested with AvaI and XbaI and ligated with T4 DNA ligase (Roche Diagnostics), generating pGCKS20. Cloning was performed in Escherichia coli XL1-Blue (Stratagene, La Jolla, CA), and the suitable plasmid was selected from among the ampicillin-resistant transformants by its molecular size verification and PCR analysis; one transformant was picked, and the amplified replicative plasmid pGCKS20 was then introduced into RN4220 by electroporation (29) and subsequently transferred to C245 by transduction, generating C245KS20. For selection, ampicillin (100 µg/ml) was used in E. coli and chloramphenicol (25 µg/ml) was used in S. aureus.
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FIG. 1. Effect of growth temperature on the phenotypic expression of methicillin resistance (A) and growth rate (B) in strain COL. For the determination of methicillin resistance, cultures grown overnight in TSB were plated at different cell concentrations on agar plates containing twofold concentrations of methicillin. Colonies were counted after 48 h of incubation at 37 and 42°C. Growth rates were measured in TSB cultures, which were monitored by determining the A620.
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FIG. 2. HPLC elution muropeptide profiles of strain COL grown at 42°C (A) and 37°C (B). Separation of S. aureus muropeptides was carried out by reversed-phase HPLC. Muropeptides were prepared and analyzed after reduction, as described previously (7). The chemical structures assigned to the muropeptides have been published elsewhere (7).
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The loss of resistance appeared to be specific for β-lactam inhibitors: cultures grown at 37°C versus 42°C had the same MICs of bacitracin (50 µg/ml), D-cycloserine (50 µg/ml), and tetracycline (100 µg/ml). There was slight increase in the vancomycin MIC (from 1.5 to 3.0 µg/ml) and decrease in the fosfomycin MIC (from 50 to 25 µg/ml) at the higher temperature.
These observations do not allow one to establish a causal relationship among the multiple changes that accompany the shift in the incubation temperature from 37 to 42°C. However, the increased growth rate at 42°C in parallel with the decreased level of resistance was reminiscent of the "fitness cost" (slower growth rate) described by several investigators in bacteria carrying genetic determinants of antibiotic resistance (2). This prompted us to search for transposon mutants in which the temperature dependence of methicillin resistance and growth rate was altered.
Selection for Tn551 mutants. Strain COL harboring the thermosensitive plasmid pRN3208 (carrying Tn551 with the erythromycin resistance determinant) was used to generate a shotgun library of Tn551 mutants as described in Materials and Methods. The library was then screened for mutants that were able to express high-level and homogeneous methicillin resistance at 42°C. Transposon mutant C245, exhibiting this phenotype, was identified among over a thousand initially screened Tn551 inserts. Mutant C245 grown at either 37 or 42°C produced homogeneously resistant cultures with methicillin MICs no lower than 400 µg/ml. Backcrossing of the Tn551-inactivated gene into the parental strain COL produced transductant C245Td, which expressed a resistance phenotype virtually identical to that of the original transposon mutant.
Sequencing and identification of the suppressor of methicillin resistance (smr1). The genetic determinant in mutant C245 was amplified and sequenced, and the obtained open reading frame and the deducted amino acid sequence (Fig. 3) were compared to sequences of known polypeptides in the TIGR and GenBank databases by using the BLAST algorithm. The homology search in the TIGR database for the S. aureus strain COL yielded (with 100% peptide similarity) identification of the locus SA0501. Further search in the GenBank peptide databases, based on the statistical significance of sequence similarity, showed that the protein in question showed significant homology with the large neurotransmitter sodium symporter family, homologues of which can be found among both eukaryotes and prokaryotes (13).
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FIG. 3. Schematic representation of the Tn551 insertion site in the disrupted open reading frame in strain C245. Genomic DNA fragments, containing the investigated gene, after self-ligation of the HindIII digests were amplified by the PCR and then sequenced. The lower part of the figure shows the amino acid sequence deduced from the nucleotide sequence. The orientation of the open reading frame is indicated by the arrowhead.
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Phenotype of the C245 transposon mutant. The methicillin resistance profile of strain COL and its transductant derivative carrying the C245 mutation was tested at 37 and 42°C in parallel with the rates of autolysis and growth rates of these strains at the two temperatures. The methicillin resistance profiles of C245 and C245Td transductant showed virtually identical high-level and homogeneous resistance at both temperatures (Fig. 4A).
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FIG. 4. Phenotypic alterations of Tn551 mutant C245 and its backcross into the parental strain COL and mutant C245Td. (A) Expression of methicillin resistance at 42°C; (B) autolysis rates; (C) growth rates; (D) colony size on solid medium incubated at 37°C.
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The C245 transductant showed identical slow growth rates at both temperatures (Fig. 4C). The slow growth of the transductant C245Td was also evidenced by the small size of its colonies on solid medium (Fig. 4D).
In contrast to the parental strain COL, C245Td produced cell walls of identical (i.e., normal) muropeptide profiles at both temperatures, and the representation of the glycine-free muropeptide monomer and its oligomeric derivatives was reduced to the levels seen in COL grown at 37°C (Fig. 5).
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FIG. 5. (A) Normalized HPLC elution muropeptide profile of strain C245Td grown at 42°C. (B) As a control, peptidoglycan of the same strain grown at 37°C was also analyzed.
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Effects of temperature shift on transcription levels of mecA, pbpB, mtgA, and femX. Several previous studies suggested that the reduced levels of methicillin resistance in cultures grown at elevated temperatures might be related to the lowered production of PBP2A and/or PBP2 at higher temperatures (16, 22, 27). We tested by Northern analysis the transcription of mecA, pbpB, mtgA, and femX—four genes that are involved with the β-lactam resistance phenotypes in S. aureus—in strain COL and its C245 transductant grown at either 37 or 42°C (Fig. 6). A modest reduction in the signal intensity for each gene was detectable in the COL samples grown at 42°C. However, the same difference was also seen in mutant C245 grown at the same temperatures, although the resistant phenotype in C245 is no longer temperature dependent.
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FIG. 6. Transcription levels of mecA, pbpB, femX, and mtgA in the parental strain COL and the Tn551 mutant C245 grown at 37 and 42°C. mRNA was extracted from mid-log-phase cultures, resolved by electrophoresis on agarose-formaldehyde gels and then located after hybridization with 32P-labeled DNA probes as described in Materials and Methods.
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FIG. 7. HPLC elution profiles of muropeptides isolated from strains COLmec- and COLmec-245 grown at 42°C (A and C) and 37°C (B and D), respectively.
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TABLE 2. Effect of inactivation of the symporter gene smr1 on the expression of oxacillin resistance in MRSA strainsa
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When trying to answer the question of what is the mechanism of the reduction of methicillin resistance in Staphylococcus aureus at 42°C, one has to remember that this is a temperature that already triggers the heat shock response, inducing multiple transcriptional changes, which may, in turn, cause extensive metabolic alterations in the bacterial cells. Anderson et al. (1) found that heat-shocked S. aureus cells (at 42°C) overexpressed 98 genes at the expense of 42 other genes that were downregulated.
As for the role of the inactivated putative symporter in antibiotic resistance, one may consider two alternatives. (i) The putative symporter may catalyze the uptake of an important amino acid, or related nitrogenous compounds, utilized by the bacterial cells. Inactivation of that gene, vital for the intermediary metabolism, would slow down bacterial growth, which may allow bacterial cells to take full advantage of their slow-paced resistance protein PBP2A. Otherwise, in fast-growing cells, PBP2A, as a low-affinity penicillin-binding protein/poor catalyst for the transpeptidation reaction, may lag behind other enzymes participating in cell wall biosynthesis. This possibility is suggested by the fact that the substantially improved resistance levels of the symporter transductants (originating from the fast-growing and only modestly resistant clinical MRSA isolates) could be achieved even at low temperatures.
(ii) Alternatively, the putative symporter may be involved in the sensing and global transcriptional response to the temperature shifts and, as such, when inactivated, it would not be possible for bacterial cells to switch their metabolism in response to the changing temperature. In this case, the expression of factors involved in cell wall biosynthesis (β-lactam resistance) would continue undisturbed. The "corrected" features of the symporter mutants, i.e., methicillin resistance, cell wall composition, and growth and autolysis rates, which are phenotypic manifestations of complex interactions between numerous genes involved in cell wall synthesis and metabolism, seem to confirm this hypothesis. This scenario seems to be quite possible since some sodium-dependent symporters are known components of the regulatory feedback control systems. For instance, an Na+/glycine betaine symporter was found to be involved with the protection of Listeria monocytogenes against osmotic and thermal shock (18). The accumulation of glycine betaine may lead to a regulatory feedback: the Na+/glycine betaine uptake carrier BetP from Corynebacterium glutamicum has recently been shown to act both as an osmoregulator and directly as an osmosensor (23).
Whatever the cellular function(s) of the sodium-dependent symporter homologue may turn out to be in S. aureus, it is beyond speculation that alterations in smr1 functionality are at least in part responsible for the methicillin resistance phenotype in MRSA strains. This conclusion is confirmed by the results of the complementation experiment illustrated in Fig. 8. Complementation of the C245Td mutant with plasmid-encoded smr1 literally abolished its high level of β-lactam resistance at 42°C and restored the parent-like (COL) phenotype.
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FIG. 8. Effect of smr1complementation on oxacillin resistance of MRSA strain C245Td. Bacterial cultures grown overnight in TSB (COL), TSB supplemented with 10 µg of erythromycin/ml (C245Td), or 10 µg of chloramphenicol/ml (C245KS20) were diluted to approximately 5 x 107 CFU/ml, swabbed onto TSA plates, and allowed to dry. Oxacillin E-test strips were then applied to the agar surface. The inhibitory effects of oxacillin on the growth of COL (A), C245Td (B), and C245KS20 (C) were determined after 18 h of incubation at 42°C.
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Published ahead of print on 3 December 2007. ![]()
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