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Antimicrobial Agents and Chemotherapy, May 2008, p. 1647-1652, Vol. 52, No. 5
0066-4804/08/$08.00+0 doi:10.1128/AAC.01479-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

AvidBiotics Corp., South San Francisco, California
Received 14 November 2007/ Returned for modification 24 January 2008/ Accepted 4 March 2008
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Francois Jacob discovered and first described pyocins as high-molecular-weight bacteriocins (11). Over subsequent decades, much effort has been expended studying Pseudomonas aeruginosa pyocin morphology, structure, genetics, and mechanism of action. Five R-type pyocins, termed R1 to R5, have been described (10), each with a unique spectrum that is related to those of the others such that R4 encompasses the spectrum of R3, R2 encompasses the spectrum of R3 and R4, and R5 has the broadest spectrum and includes those of all the other pyocins in addition to other strains. The spectrum of R1 is distinct from those of R2, R3, and R4 but is still a subset of that of R5. So R5 is at the root of a "spectrum tree" with two branches; R1 is one branch, and R2, R4, and R3 form another branch, in that order. Although the term R-type pyocin is commonly used to describe the high-molecular-weight bacteriocins of P. aeruginosa, similar entities have been described for multiple other gram-negative bacteria (4) and even for the gram-positive organisms Listeria monocytogenes (36) and Staphylococcus aureus (30). We elected to study peritonitis in mice infected with P. aeruginosa, a target pathogen for wild-type R-2 pyocin; R-2 pyocin is lethal to many P. aeruginosa strains. Peritonitis caused by P. aeruginosa is a serious threat to children with ruptured appendices and patients undergoing continuous ambulatory peritoneal dialysis (CAPD) (1, 3, 13, 35).
The antibacterial efficacy of R-type pyocins in P. aeruginosa infections has previously been demonstrated in two early, cursory studies of peritonitis in mice (6, 19). These studies were limited in scope, did not employ a quantitative pyocin assay to determine exact doses, and did not explore dose response, time of administration, or more than a single route of administration. In this study, we significantly expanded the analyses of in vivo efficacy to assess the potential of pyocins as human therapeutics and prophylactics. We have compared the efficacies of intraperitoneal (i.p.) and intravenous (i.v.) routes of administration of known quantities of a wild-type pyocin at various times after i.p. infection of mice. Bacterial counts in blood and spleen samples before and after treatment were monitored, and a preparation of a recombinant pyocin ineffective in vitro on P. aeruginosa, as a negative control, was shown to have no efficacy in vivo.
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Semiquantitative assays of R-type pyocins were also performed by a spot method wherein 5-µl samples of pyocin were serially diluted 1:5 in TN50 buffer and spotted on lawns of target bacteria. After overnight incubation at 37°C, pyocin activity could be observed by a circular clear zone of killing the size of the liquid application on the lawn.
Pyocin purification. Pyocin production and purification have been accomplished by developing protocols similar to those described by Ito et al. (10). P. aeruginosa strain PAO1 is a producer of R2 pyocin and was the source of pyocins for this study. R-type pyocins, which naturally are under recA control, were induced by adding mitomycin C to log-phase suspension cultures growing in G medium (20 g sodium glutamate, 5 g glucose, 2.23 g Na2HPO4, 100 mg MgSO4·7H2O, 250 mg KH2PO4, 500 mg yeast extract per liter) at 37°C and shaken at 200 rpm. When the cultures, typically 100 to 200 ml, reached an optical density at 600 nm of 0.250, mitomycin C was added to give a final concentration of 3 µg/ml. Cultures were incubated for an additional 2.5 h until complete lysis occurred. The culture was allowed to incubate an additional 30 min after 5 µl (1 U/µl; Invitrogen) of DNase I was added per 200-ml culture. The subsequent preparation was carried out at 4°C. Lysates were collected, and debris was removed from the lysate by centrifugation at 22,000 x g in a Beckman Coulter Avanti J-25I centrifuge with a JLA-16.250 rotor for 1 h. To each 100 ml of supernatant, 65 ml of saturated ammonium sulfate was slowly added, at a rate of 1 ml/min, with stirring on ice. The suspension was stored at 4°C overnight. The ammonium sulfate precipitate was sedimented at 22,000 x g for 1 h and the pellet resuspended in 10 ml of TN50 buffer. R-type pyocin particles were then sedimented at 65,000 x g in a Beckman JA-25.50 rotor for 1 h at 4°C and resuspended in 3 to 5 ml of TN50 buffer. Pyocin preparations were judged to be 80 to 90% pure by sodium dodecyl sulfate gel analysis and either Coomassie blue or silver staining.
A typical yield of pyocins was 100 particles per induced bacterium, and a typical density of purified, concentrated R-pyocins was 3 x 1012 per ml. R2 pyocins are stable (<10% loss) for at least 60 days at 4°C in TN50 buffer without preservative.
In vivo studies. All animal studies were carried out by ViviSource Laboratories, Inc., Cambridge, MA, a USDA-approved facility with AAALAC accreditation pending. P. aeruginosa strain 13s, used throughout as the pathogen for infecting mice, was grown with shaking overnight at 37°C in brain heart infusion broth. The overnight culture was diluted 10-fold in brain heart infusion broth and grown with shaking for an additional 5 h at 37°C. This culture was further diluted in 8% hog gastric mucin to achieve concentrations of 106 to 107 CFU/ml. CD-1 female mice (Charles River Laboratories) weighing 18 to 22 g were injected i.p. with 0.5 ml of the P. aeruginosa strain 13s inoculum per mouse, using 25-gauge needles. Aliquots of the inocula were cultured quantitatively on Trypticase soy agar plates to obtain the actual number of CFU in each inoculum.
Treatment involved the delivery of pyocins at the indicated times and known doses in 0.1 ml of TN50 with 25-gauge needles either directly i.p. or i.v. via the dorsal tail vein. Animals were housed at five per cage with ad lib water and food and were monitored for signs of illness. If and when animals were first observed to be moribund, they were euthanized by CO2 inhalation. Twenty-four and 48 h after inoculation, surviving animals were counted.
Bacteria in the blood samples were enumerated by serially diluting the sample and plating it on MacConkey agar plates. Spleens were weighed, homogenized, serially diluted, and plated. Plates were incubated at 37°C overnight and colonies of bacteria counted.
Immunogenicity. Mouse sera were assayed for neutralizing antibodies by determining their ability to inactivate pyocin activity in vitro. Sera were serially diluted in TN50 buffer, added to 1010 pyocin particles to give a final volume of 50 µl, and incubated for 30 min at 25°C. Residual pyocin activities were determined by the titration assay as described above. Naïve mouse sera had no effect on pyocin activity.
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Bacteria in the blood and spleen samples were enumerated starting 2 h and up to 24 h after infection (Table 1) (five animals per time point). Bacteria appeared in the blood and spleen samples within 2 h and had expanded an additional 1.6 logs in blood samples and 1.9 logs in spleens after 8 h, indicating an aggressive systemic infection.
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TABLE 1. Bacterial counts
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FIG. 1. Effective treatment window for i.p. administration of pyocin. Female CD-1 mice were infected with LD90 inocula of strain 13s P. aeruginosa. A cohort of 10 infected animals was not treated, to verify that the inocula were at the LD90 value. At each of the indicated times after infection, 10 animals were treated once i.p. with 3 x 1011 pyocins in 0.1 ml. If and when animals first appeared moribund, they were euthanized, and survivors were counted at 24 (broken line) and 48 (solid line) hours postinfection.
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FIG. 2. Responses of infected animals to different i.p. doses of pyocins. Female CD-1 mice were infected with LD90 inocula of strain 13s P. aeruginosa. A cohort of 10 infected animals was not treated, to verify that the inocula were at the LD90 value. One hour after infection, cohorts of 10 animals each were treated once i.p. with each of the indicated doses of pyocin in 0.1 ml. If and when animals first appeared moribund, they were euthanized, and survivors were counted at 24 (broken line) and 48 (solid line) hours postinfection.
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FIG. 3. Effective treatment window for i.v. administration of pyocin. Female CD-1 mice were infected with LD90 inocula of strain 13s P. aeruginosa. At each of the indicated times after infection, cohorts of 10 animals each were treated once i.v. with 3 x 1011 pyocins in 0.1 ml. If and when animals first appeared moribund, they were euthanized, and survivors were counted at 24 (broken line) and 48 (solid line) hours postinfection.
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FIG. 4. Responses of infected animals to different i.v. doses of pyocins. Female CD-1 mice were infected with LD90 inocula of strain 13s P. aeruginosa. One hour after infection, cohorts of 10 animals each were treated once i.v. with each of the indicated doses of pyocin in 0.1 ml. If and when animals first appeared moribund, they were euthanized, and survivors were counted at 24 (broken line) and 48 (solid line) hours postinfection.
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We have engineered R-type pyocins to target other strains, species, and genera of bacteria by altering the tail fibers such that they recognize different targets (S. Williams et al., submitted for publication). One such pyocin, termed R2-P2, was made by fusing the C-terminal 511 amino acids of the bacteriophage P2 tail fiber to the 164-amino-acid portion of the R2 pyocin tail fiber. The resulting pyocin particles have no in vitro killing activity against any Pseudomonas strains, including 13s, but are active against Escherichia coli C, which is a host for phage P2. Administering 1011 R2-P2 pyocins (as determined by activity using E. coli C as the indicator) i.v. 1 h after i.p. infection did not rescue mice (1 survivor in 10) from peritoneal infection by an LD90 inoculum of P. aeruginosa strain 13s. This supports the hypothesis that pyocins rescue mice by specifically killing targeted bacteria and that the results are not due to a contaminant in the pyocin preparation or a nonspecific effect of the pyocin, such as immune stimulation.
R-type pyocins are foreign proteins to mice and may provoke immune responses which might compromise pyocin efficacy in retreated animals. To test this, mice were infected and successfully treated with an i.v. dose of 3 x 1010 pyocins at 1 hour postinfection. The recovered animals were maintained for an additional 28 days. The animals were then rechallenged i.p. with another LD90 infection by strain 13s P. aeruginosa. After the rechallenge, three groups of 10 animals each were treated again i.v. 1 hour after infection with 3 x 109, 3 x 1010, or 3 x 1011 pyocins to determine whether their sensitivities to pyocins had been altered by the previous exposure to pyocins. A cohort of reinfected animals was not retreated, in order to determine whether any protection against strain 13s P. aeruginosa was conveyed by their prior exposure to the pathogen. The results revealed a reduction in the efficacy of pyocins in animals previously infected and cured by pyocins. Between 10 and 40% of the animals originally cured with the lowest effective i.v. dose were still protected by i.v. pyocins when reinfected and then retreated, and the protection was not proportional to the retreatment dose. Sera from five of the animals that died after the second treatment were examined for neutralizing antibodies. Four out of the five animals showed low levels of neutralizing antibodies, with a 1-log reduction in pyocin activity at the 1/20 serum dilution. Sera from five survivors were also examined and exhibited little or no neutralizing activity.
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In this study, the P. aeruginosa inocula were chosen to result in 90% mortality by 48 h after infection so as to provide an aggressive infection and clear therapeutic endpoints. The data from the LD90 determination indicate that a 10-fold reduction in the number of inoculated pathogens would result in significant reduction in mortality. The i.p. and i.v. dose responses were similar, although when delivered i.p., comparable doses of pyocins exhibited better efficacy, with a 5- to 10-fold lower ED50. At the minimally effective (80% survival) i.p. dose, the number of administered pyocin molecules relative to the number of inoculated bacteria was less than 750. The numbers of bacteria in blood and spleen samples increased when treatment was delayed, yet pyocins still killed at least 99.99% of the bacteria in the blood and spleen samples.
When delivered i.v. up to 8 h after infection, pyocins protected animals for 24 h, but the protection failed to last for 48 h. At 48 h, protection from death could be observed only if pyocins were delivered i.v. within 2 h of i.p. infection. This contrasts with i.p. administration. Up to 4 h after infection, i.p. pyocin rescued animals from death, with little difference between survival rates at 24- and 48-h endpoints. As measured at 48 h, the less durable effect of i.v. pyocins delivered 4 h or more after infection will require further exploration. However, further-delayed i.v. treatment does protect for 24 h. Perhaps diffusion of pyocin from the blood into the peritoneal space is inadequate to eliminate the load of bacteria that have expanded between 2 and 4 h in that inoculated compartment and continue to seed the bacteremia. A dose of pyocins delivered directly to the inoculated compartment could control that site while still diffusing into the vascular compartment to eliminate the early bacteremia. The latter might be predicted based on the ability of bacteriophages to enter the circulating blood rapidly after i.p. administration (5, 20, 32).
R-type pyocins are potentially immunogenic. The studies described herein have shown that neutralizing antisera can be generated by administering therapeutic doses of pyocins i.p. or i.v. to mice. However, the neutralizing titers observed 28 to 30 days afterwards are low (1:20) and do not consistently antagonize treatment. Nevertheless, it is likely that repeated systemic exposures to R-type pyocin will result in loss of efficacy. This may not be an issue for some severe, acute Pseudomonas infections requiring only short-term use but may ultimately limit chronic use. To address this, we are exploring the generation of hypoimmunogenic variants of pyocin proteins. It may be feasible to engineer "deimmunized" pyocins for human use by recently developed methods of identifying and modifying the major T-cell epitopes of the pyocin proteins (26).
R-type pyocins, compared to traditional antibiotics, have several potential advantages as antimicrobial agents. Their narrow, species- and strain-specific bactericidal spectra permit them to kill the target bacteria without disrupting the normal microbial flora, a feature advantageous for treatment and prevention of many bacterial diseases. Second, there is no known mechanism by which pyocin resistance can be spread horizontally between bacteria, a phenomenon all too common with traditional antibiotics.
R-type pyocins share many features with bacteriophages. Phages have recently been used to treat murine peritonitis and bacteremia (7, 32, 33). Watanabe et al. (33) had limited success using lytic bacteriophages to treat peritonitis, whereas Hagens et al. (7) showed better efficacy using a lysis-deficient, nonreplicating phage. It was suggested by the latter authors that the difference could be due to the fact that lysis of the bacterial cells by lytic phages led to the release of endotoxins, which may have compromised efficacy. Similarly, R-type pyocins, which leave the dead bacterial cell largely intact, should not result in release of endotoxins.
While R-type pyocins are highly specific, their specificities can also be engineered. The spectrum determinant of pyocins resides in the tail fiber protein, which binds to specific receptors on the bacterial cell surface. We have exploited this feature to engineer pyocins to create novel bactericidal agents that can be specifically targeted to other pathogens (Williams et al., submitted). In theory, we could engineer pyocins to target surface-accessible bacterial virulence factors so that in order to become pyocin resistant, bacterial mutants must lose the pyocin receptor and thereby compromise their virulence.
These studies provide evidence that pyocins delivered systemically or locally can effectively treat an acute, potentially lethal Pseudomonas infection in mice. Furthermore, the observed rapid reduction of bacterial load in blood and spleen samples, dose response curves, and therapeutic windows suggest that pyocins exhibit characteristics of therapeutic molecules. This is particularly encouraging in the context of the need for new antimicrobials (29).
We thank Steve Williams and Dana Gebhart for their technical support and Andrew Jamison for assistance in developing the pyocin assays. Dean Scholl and David Martin are employees and shareholders of AvidBiotics Corp.
Published ahead of print on 10 March 2008. ![]()
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a-Jelen, A. Opolski, B. Weber-Dabrowska, and A. Gorski. 2005. Bacteriophage penetration in vertebrates. J. Appl. Microbiol. 98:7-13.[CrossRef][Medline]This article has been cited by other articles:
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