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Antimicrobial Agents and Chemotherapy, May 2008, p. 1820-1828, Vol. 52, No. 5
0066-4804/08/$08.00+0 doi:10.1128/AAC.01181-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
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Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford OX1 3QU, United Kingdom,1 Institute of Biochemistry, Splaiul Independentei, 296, Sector 6, Bucharest 77700, Romania2
Received 7 September 2007/ Returned for modification 16 October 2007/ Accepted 25 February 2008
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Iminosugar derivatives are a group of compounds that have been evaluated as potential antivirals by use of the bovine viral diarrhea virus (BVDV) system (2, 6, 7, 28). Iminosugars exert their antiviral activity by one or more modes of action, depending on the sugar analogue head group and the length of the alkyl side chain that they carry. Deoxynojirimycin (DNJ)-based iminosugar derivatives exert their antiviral effects by impairing the correct folding of the viral envelope glycoproteins of BVDV (2, 6) and other enveloped viruses, including hepatitis B virus (25), human immunodeficiency virus (12), and HCV (3), via inhibition of the host-cell encoded endoplasmic reticulum (ER)
-glucosidases I and II, which prevents the crucial interaction of the viral envelope glycoproteins with the cellular chaperones calnexin and calreticulin. Treatment with DNJ-based iminosugars causes an inhibition of HCV E1-E2 assembly and the incorporation into HCV pseudoparticles, as well as a reduction in viral infectivity due to the incorporation of some misfolded glycoprotein complexes into virions (3). A second antiviral mechanism of action can be attributed to the alkyl chains attached to the sugar analogue head group of iminosugars. Long alkyl side chains attached to the head group are able to inhibit the HCV p7 ion channels that are crucial for viral infectivity (10, 21, 22). This has been demonstrated in in vitro studies with chemically synthesized HCV p7 peptides incorporated into artificial lipid membranes (19), in the BVDV cell culture system (7), and more recently, in the HCV cell culture (HCVcc) infectivity system, where long alkyl chain derivatives, such as N-nonyl-DNJ (NN-DNJ) and N-nonyl-galactonojirimycin (NN-DGJ) decrease, in a dose-dependent manner, the secretion and/or infectivity of HCV. In these experiments virus secreted from infected cells was used to reinfect naïve cells and viral infectivity was monitored over five passages (23).
Prior to the development of the HCVcc infectivity system (13, 24, 26), BVDV, which is the virus that is the most closely related to HCV, was the preferred HCV surrogate model system for studies that depended on the ability to re-create a whole infectious cycle in cell culture. Although most aspects of HCV morphogenesis, viral secretion, and reinfection can now be studied in the HCVcc system, other aspects remain problematic, most notably, the long-term culture of HCV-infected host cells. The latter is essential to enable the study of viral clearance, the emergence of viral escape mutants, and viral rebound after the cessation of extended drug treatment. For this purpose, BVDV is currently still the most robust model system available. Here we show that, in contrast to IFN-RBV treatment alone, the inclusion of iminosugars in a triple combination eradicates noncytopathic (ncp) BVDV from persistently infected Madin-Darby bovine kidney cells (MDBK) cells in a time- and a dose-dependent manner and prevents viral rebound after treatment is stopped.
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Detection of BVDV in infected cell line. To detect the stable infection either at the beginning of the experiments or after the final passage after treatment, supernatants were harvested and the cells were probed for the presence of BVDV. The persistently infected MDBK cells were fixed with 2% (vol/vol) paraformaldehyde for 30 min. The cells were washed with phosphate-buffered saline (PBS), blocked in a 5% (wt/vol) milk-PBS solution for 30 min, and permeabilized with 1% (vol/vol) Triton X-100 for 20 min. After the cells were washed with 1% (vol/vol) Tween-PBS, the cells were incubated for 1 h with the primary antibody WB103/105 (1:500 dilution; Veterinary Laboratory Agency, Weybridge, United Kingdom), which recognizes the BVDV NS2 and NS3 proteins. After subsequent incubation with an anti-mouse fluorescein isothiocyanate (FITC)-conjugated secondary antibody (Sigma) and extensive washing in PBS, the nuclei were stained with 4',6-diamidino-2-phenylindole (DAPI; Vector Laboratories Inc.). Fluorescence was observed under an inverted Nikon Eclipse TE200-U microscope.
Infectivity assays by IF analysis. MDBK cells were grown in six-well plates to 70% confluence; the supernatant was removed and discarded. Cells were infected for 1 h at 37°C with 500 µl of the supernatants harvested from the BVDV-infected and mock-infected cells. After removal of the inoculum, the cells were washed twice with PBS and incubated overnight in fresh medium. Infectivity was determined by IF, as described above.
Viral RNA purification and real-time RT-PCR analysis. At each passage, a 500-µl aliquot of each supernatant harvested from the cultured cells was concentrated by ultrafiltration (molecular weight cutoff, 10 kDa; Centricon filter; Millipore) to 140 µl. The RNA from the released viral particles was purified from the concentrated supernatants by using a QIAamp viral RNA purification kit (Qiagen, Crawley, United Kingdom), according to the manufacturer's instructions. Briefly, RNA was eluted in 50 µl, and samples were treated with DNase (90 min at 37°C, 20 min at 80°C). Real-time RT-PCR was carried out with a Qiagen SYBR green Quantitect RT-PCR kit. Primers amplifying a 334-bp region spanning parts of the NS2-coding sequence were used (forward primer, 5'-TAG GGC AAA CCA TCT GGA AG-3'; reverse primer, 5'-ACT TGG AGC TAC AGG CCT CA-3'). RT was achieved at 50°C for 30 min, followed by incubation at 95°C for 15 min to activate the hot start polymerase. The resulting DNA was amplified by PCR (35 cycles of 15 s at 95°C, 1 min at 50°C, and 1 min at 72°C; final extension for 7 min at 72°C). The reactions were carried out with an Opticon 2 real-time PCR machine (Bio-Rad). Internal standards prepared from a highly concentrated ncp BVDV supernatant were used to generate standard curves.
MTS cell proliferation assay. Cellular toxicity was measured with a Cell Titer 96 aqueous nonradioactive cell proliferation assay kit, according to the manufacturer's instructions (Promega). In brief, 2 x 104 MDBK cells were taken from all three sets at P5, P10, and P15 and again at the end point of the experiments, i.e., at either P22 or P32. Then, equivalent cell numbers from all treatment regimens were subjected in a 96-well plate to a further 72 h of culture (allowing for three cell doubling times) in the presence of their respective treatment compounds. Then, 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium) (MTS)-phenazine methosulfate solution (40 µl) was added to each well and the samples were incubated at 37°C in a humidified 5% CO2 atmosphere for 3 h. The absorbance was read at 490 nm with a UVmax plate reader (Molecular Devices). Each sample was analyzed in triplicate, and the results were compared to those for the non-drug-treated cells (as the 100% viability control), which were passaged in parallel with the drug-treated samples.
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Evaluation of antiviral effects of IFN and RBV alone or supplemented with iminosugar derivatives in persistently infected MDBK cells. The chemical structures of the iminosugar derivatives used in this study and the experimental outline are shown in Fig. 1. The aim of this study was to evaluate whether the viral relapse observed after the cessation of treatment with the IFN-RBV double combination could be delayed or prevented by the inclusion of an iminosugar derivative in a triple combination. First, we established that addition of an iminosugar to the IFN-RBV double combination from the beginning did not cause viral RNA levels in the supernatants to decrease faster or in a synergistic fashion (data not shown). Therefore, we used IFN-RBV alone to achieve the initial fast drop in measurable virus titers. Culturing of persistently infected MDBK cells in the presence of IFN (1,000 IU/ml) and RBV (1 µM) for three passages (P0 to P3) led to a decrease in the amount of viral RNA present in the supernatant to below the detection limit of 39 RNA copies per ml of the real time (SYBR green-based) RT-PCR assay used in the experiment. Inoculation of naïve MDBK cells with this supernatant did not lead to infection, as determined by IF. In contrast, supernatant taken from the untreated control sample contained at least 3.51 x 106 RNA copies per ml and could reinfect naïve cells (data not shown).
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FIG. 1. (A) Chemical structures of the iminosugar (IS) derivatives used in the study. (B) Experimental outline. After a stable infection was established, the cells were cultured for three passages (9 days) in the presence of 1,000 IU/ml IFN and 1 µM RBV. At P3, after the viral RNA levels dropped below the detection limit, the medium was supplemented with one of the iminosugar derivatives. At the end of P8, the samples were split into three sets: set 1 (black line), all drug regimens remained the same; set 2 (cross-hatched line), all drugs were removed; set 3 (gray line), only iminosugars were continued. After P12, samples from set 1, which had been cultured for nine passages in the presence of IFN-RBV and an iminosugar, were split into sample sets 1, 2a, and 3a and treated in the same manner as described above.
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The supernatants of cells grown in the continuous presence of either the IFN-RBV double combination or any of the triple combinations that included an iminosugar (set 1) did not contain any viral RNA, as measured by real-time RT-PCR (Fig. 2, P9 and P10), or any infectious virus, as determined by infectivity studies with naïve MDBK cells (data not shown) in the two subsequent passages analyzed. In contrast, when either all three drugs (set 2) or IFN-RBV only (set 3) were removed at P8 (the earlier of the two triple-combination end points), we observed viral rebound in all samples. In set 2, one passage after drug removal, viral rebound was immediate and most pronounced for samples that had been treated for five passages with IFN-RBV only. Viral RNA was also detected in samples treated with IFN-RBV in combination with 50 µM NN-DNJ or 100 µM N7-DGJ (Fig. 2, set 2, P9). Viral rebound was delayed by one passage, to P10, for those samples that had been treated with IFN-RBV in combination with NB-DNJ (Fig. 2, set 2, P10). Viral titers were higher in samples treated with IFN-RBV only than in those treated with triple cocktails, suggesting that iminosugars may be able to control or delay viral rebound after removal of the drugs (Fig. 2, set 2, P10). This observation is supported by the results obtained with sample set 3, where, in the continued presence of an iminosugar, little or no viral RNA was detected one passage after the removal of IFN-RBV, although again, rebound was only delayed and not entirely prevented (Fig. 2, set 3, P9 and P10). In addition, infectious virus was detected, as determined by infectivity studies with naïve MDBK cells, for both set 2 (see Fig. 4) and set 3 (data not shown) in the two subsequent passages analyzed.
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FIG. 2. After eight passages of the various drug treatments, all drugs were either left on (set 1) or removed (set 2) or cells continued to be cultured in the presence of an iminosugar only for a further two passages (set 3). In all cases, for those columns denoted with an iminosugar concentration, the cells had been treated with a triple combination of IFN-RBV and an iminosugar of that concentration for five passages. The numbers of viral RNA copies from supernatants harvested at P9 (left column) and P10 (right column) were measured by real-time RT-PCR and are shown as a percentage of the numbers of copies for the non-drug-treated BVDV-infected control. The data presented are from two independent experiments (experiments E1 and E2). At P9 and P10, the supernatants from the no-drug control in experiment E1 contained 8.71 x 106 and 5.05 x106 RNA copies/ml, respectively; and at P9 and P10 in experiment E2, the supernatants contained 5.1 x106 and 5.5 x 106 RNA copies/ml, respectively.
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FIG. 4. IF analysis of naïve MDBK cells incubated with supernatants from treated BVDV-infected cells (set 2) at P10 (A) and P22 (B) and of long-term-treated BVDV-infected MDBK cells (set 2) at P22 (C). The cells were fixed and probed with a monoclonal antibody against the BVDV NS2 and NS3 proteins, followed by incubation with an anti-mouse FITC-conjugated secondary antibody (green). Cell nuclei were stained with DAPI (D). ND, no drug.
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In the continued presence of all three drugs (set 1), no viral RNA was detected by RT-PCR in any of the samples under these conditions. By the conclusion of the experiment, the cells had been treated with IFN-RBV for 22 passages (or with triple cocktails for 19 passages) without any viral breakthrough occurring (Fig. 3A).
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FIG. 3. After 12 passages of the various drug treatments, all drugs were either left on (A) or removed (B) or cells continued to be cultured in the presence of an iminosugar only for a further 10 passages (30 days) (C). The numbers of viral RNA copies at P22 were measured by real-time RT-PCR and are shown as a percentage of the numbers of copies for the non-drug-treated BVDV-infected control. The data presented are from two independent experiments (experiments E1 and E2) in which the no-drug control contained 1.13 x 107 and 4.6 x106 RNA copies/ml, respectively.
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Treatment with IFN-RBV and NB-DNJ eradicates BVDV infection from a persistently infected MDBK cell line in a dose-dependent manner and prevents viral rebound. Having demonstrated the efficacy of iminosugars in combination with IFN and RBV, we next explored the minimum concentration of NB-DNJ required to eradicate BVDV infection from a persistently infected MDBK cell line. We performed the same cell culture experiments with triple cocktails of IFN-RBV-NB-DNJ containing NB-DNJ at lower concentrations. Infected MDBK cells were cultured in the presence of IFN-RBV for three passages until the viral RNA signal dropped below detectable levels. Subsequently, the medium was supplemented with 0.1, 1, or 10 µM NB-DNJ and the cells were cultured for a further nine passages (P3 to P12) in the presence of the triple combinations. The cells were then divided into three sets as before, and the cells receiving follow-up treatments were analyzed by both RT-PCR and infectivity assays.
For infected cells that had been treated with IFN-RBV only, removal of these two drugs led to an immediate and pronounced rebound of viral RNA in the supernatant, the levels of which fluctuated (Table 1). After a large initial surge at P13, viral RNA levels dropped for several weeks but were higher at the final reading (P32) than the viral RNA levels in the untreated controls.
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TABLE 1. Real time RT-PCR analysis of secreted viral RNA levels in the supernatants of cells under various treatment regimensa
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FIG. 5. IF analysis of treated BVDV-infected MDBK cells at P32. At 20 passages (60 days) after the removal of all drugs (A) or after the removal IFN-RBV (iminosugar maintenance) (B), cells were fixed and probed with a monoclonal antibody against the BVDV NS2 and NS3 proteins, followed by incubation with an anti-mouse FITC-conjugated secondary antibody (green). Cell nuclei were stained with DAPI (blue).
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We used the BVDV model system to show that the addition of morphogenesis inhibitors to IFN-RBV has the potential to eradicate virus from persistently infected cells and to prevent viral relapse after treatment is stopped. Supplementing the drugs that comprise the current standard of care with compounds such as iminosugars, which target entirely different steps in the viral life cycle, is sufficient to cope with those undetectable (by real time RT-PCR and infectivity assays) yet undisputedly remaining viruses that lead to the quick and frequently strong viral reoccurrence and expansion after IFN and RBV are removed. DNJ-containing iminosugars cause misfolding of the viral envelope glycoproteins (via ER
-glucosidase inhibition) and the subsequent impairment of viral secretion and infectivity, as we have demonstrated for BVDV (2, 6) and HCV (23). In addition, we have shown that long alkyl chain-containing iminosugars (such as NN-DNJ, NN-DGJ, and N7-DGJ) inhibit the viral ion channel p7 (19, 23), which is crucial for the secretion of infectious virus for both BVDV (10) and HCV (11, 21, 22). Long alkyl chain-carrying DNJ compounds employ both mechanisms of action, making them attractive for future drug development.
In a previous study with the same BVDV-MDBK cell system, four passages were needed to reduce the viral signal to undetectable levels by semiquantitative RT-PCR by using 100 IU IFN and 2 µM RBV (7). In the current study we aimed to achieve a faster drop in viral RNA levels and used 1,000 IU IFN and 1 µM RBV, which also were not toxic for the duration of the experiment yet were sufficient to attain elimination of the viral signal at least two passages earlier, as determined by a more sensitive real-time PCR detection method.
In the study presented here, we focused mainly on the short alkyl chain-carrying ER
-glucosidase inhibitor NB-DNJ, as this compound, with its history of safe use (5, 18), could be a lead candidate for rapid progression to clinical anti-HCV trials.
In the BVDV-MDBK cell system, the inclusion of 10 µM NB-DNJ successfully prevented relapse after the cessation of triple therapy, and 1 µM NB-DNJ was sufficient to prevent relapse when it was administered continuously as monotherapy during maintenance treatment after the removal of IFN-RBV. This concentration range can be achieved and tolerated in human patients (5, 18). We propose that the likelihood that viruses will accumulate mutations which could enable them to become independent of either iminosugar target (the host cell-encoded ER
-glucosidases or the p7 ion channel) is much reduced compared to the demonstrated speed at which viral escape mutants emerge in the presence of inhibitors targeting virally encoded enzymes, such as the polymerase or protease (4, 16).
Ouzounov et al., who analyzed a single replication cycle of cytopathic BVDV (17), have reported that higher NB-DNJ concentrations in combination with IFN show a greater than additive antiviral effect in an experimental setting with an MOI of >1. The ncp BVDV system used in our study mirrors a chronic viral infection such as that with HCV, with a lower MOI over several viral and cellular replication cycles. In this system, no synergy was observed when physiologically achievable NB-DNJ concentrations were added to a high-concentration IFN-RBV combination; i.e., when iminosugars were added to IFN-RBV at the start of the treatment, the time needed to reduce the viral signal below the detection limits remained the same whether NB-DNJ was or was not added at the start of treatment with IFN-RBV (data not shown). We hypothesize that this is due to the low NB-DNJ concentrations used compared to those of IFN and RBV. The last two compounds are fast-acting drugs which can achieve drops in viral RNA levels on a log order scale within a few days, whereas iminosugars are slower acting drugs which do not directly affect viral RNA synthesis or replication. Therefore, we added the iminosugars after the initial IFN-RBV-induced strong decrease in viral RNA levels instead, when the potentially available mutant pool was the smallest. By our treatment protocol, all iminosugar derivatives tested showed efficacy and the potential to eradicate persistent BVDV infection from MDBK cells and prevented viral relapse after the cessation of treatment. For NB-DNJ, we showed that this was time and dose dependent.
Significantly, because of the targets involved, all HCV genotypes, including the challenging genotype 1, which is responsible for most cases of viral relapse observed in human patients (9, 14), are predicted to respond to iminosugar treatment. We have already shown in the cell culture infectivity system that HCV chimeras encoding the envelope glycoproteins and p7 of genotypes 1a, 1b, and 2a respond to NB-DNJ, NN-DNJ, and NN-DGJ to similar extents (23). Next, we aim to demonstrate that the short alkyl chain-carrying ER
-glucosidase inhibitor NB-DNJ prevents viral rebound in treated HCV-infected patients. In addition, we are improving the delivery and tolerability of long alkyl chain iminosugar derivatives to take advantage of their additional ability to inhibit the p7 ion channel and develop a dual target drug for clinical use against HCV.
We thank Jo O'Leary for critical reading of the manuscript.
Published ahead of print on 3 March 2008. ![]()
Supplemental material for this article may be found at http://aac.asm.org/. ![]()
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