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Antimicrobial Agents and Chemotherapy, July 2008, p. 2407-2414, Vol. 52, No. 7
0066-4804/08/$08.00+0 doi:10.1128/AAC.00214-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Antibiotic Laboratory, Bacteriology Service, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, Madrid, Spain,1 Consejo Superior de Investigaciones Científicas, Madrid, Spain2
Received 15 February 2008/ Returned for modification 21 March 2008/ Accepted 13 April 2008
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0.5 µg/ml (no resistance mechanisms; pharmacokinetic/pharmacodynamic [PK/PD] data favorable); intermediate, MICs = 1 to 2 µg/ml (resistance mechanisms present but PK/PD data favorable), and resistant, MICs
4 µg/ml (resistance mechanisms present and PK/PD data unfavorable). |
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BLNAR strains with low ampicillin MICs currently represent the majority of the BLNAR population in Europe and the United States (8, 12, 20). Previous studies have identified BLNAR isolates with mutations in the ftsI gene encoding PBP3 that have ampicillin MICs of
1 µg/ml (7, 14, 15, 33). Therefore, currently recommended ampicillin breakpoints (6) may fail to detect a significant number of the low-BLNAR population, leading to significant clinical and epidemiological consequences.
Detecting BLNAR strains by PCR and direct sequencing of the ftsI gene is difficult and impractical. High-BLNAR isolates (with MICs of 8 to 16 µg/ml) are effectively identified by regular susceptibility-testing methods, but such isolates are very rare in clinical laboratories. In contrast, low-BLNAR strains are commonly isolated, and their incidence may be increasing in many parts of the world (12, 29). Low-strength disks of ampicillin (2 µg) and amoxicillin-clavulanic acid (2 and 1 µg) have been proposed as alternative screening methods to discriminate between BLNAR and β-lactamase-negative ampicillin-susceptible (BLNAS) strains (23, 34), but in these proposals, the mutation status of the ftsI gene was not determined. In addition, an Epsilon test (Etest) (AB-Biodisk, Solna, Sweden) alone may not define the actual MICs of BLNAR and BLPACR strains for β-lactam antibiotics (2).
Recently, we observed that β-lactamase-negative H. influenzae isolates with ampicillin MICs of
2 µg and PBP3 amino acid substitutions increased in Spain from 13.6% in 1997 to 28.9% in 2007 (14a). We also realized that laboratory recognition of these isolates by standard susceptibility methods was difficult, as the methods lacked sensitivity and specificity. In addition, we have reported that cefixime and cefpodoxime resistances in H. influenzae have recently increased in Spain (14).
Accordingly, our main objective was to determine the most appropriate methods to detect low-BLNAR and BLPACR strains. We studied the antibiotic susceptibilities of clinical H. influenzae isolates with well-characterized mechanisms of ampicillin resistance in order to (i) evaluate the abilities of ampicillin, amoxicillin, and amoxicillin-clavulanic acid to distinguish the low-BLNAR and BLPACR populations; (ii) compare broth microdilution and Etest methods for the detection of H. influenzae with different mechanisms of resistance to β-lactam antibiotics; (iii) determine the usefulness of low-strength disks of ampicillin and amoxicillin-clavulanic acid for screening low-BLNAR strains; (iv) determine the most suitable method to detect isolates with increased resistance to cefixime; and, finally, (v) propose interpretative criteria for the more accurate distinction of low-BLNAR and BLPACR isolates.
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The study collection was selected so that the most important and common mechanisms of ampicillin resistance were represented. Four genotypes of ampicillin susceptibility were included: 25 strains had no detectable resistance mechanism (gBLNAS), 34 had mutations in the ftsI gene (gBLNAR), 20 produced β-lactamase but had no ftsI mutations (gBLPAR), and 15 produced β-lactamase and also had mutations in the ftsI gene (gBLPACR). Genotype determination carried out by PCR amplification and DNA sequencing of ftsI and blaTEM genes was the gold standard method against which all other methods were tested.
Clinical isolates with alterations in the ftsI gene (gBLNAR and gBLPACR genotypes) were selected on the basis of their amino acid substitutions and represented the most common mutation patterns described in BLNAR isolates (14) (Table 1). β-Lactamase-positive isolates (all of the TEM 1 type) were chosen so that the most common promoter regions (26, 31) were represented: 14 isolates had the Prpt promoter (6 gBLPAR and 8 gBLPACR), 12 isolates contained the Pdel promoter (7 gBLPAR and 5 gBLPACR), and 9 isolates had the Pa/Pb promoter (7 gBLPAR and 2 gBLPACR).
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TABLE 1. Amino acid substitutions present in H. influenzae isolates with mutations in the ftsI gene
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Strain ATCC 49766 was included as a fully susceptible control and strain ATCC 49247 as an H. influenzae BLNAR strain, as recommended by the CLSI (6). Strain ATCC 51907 is a strain whose whole genome has been sequenced (11). These three ATCC strains were studied in parallel and were included for quality control and comparative purposes.
Susceptibility testing. The reference broth microdilution method was performed following CLSI guidelines (4, 5), except that the plates were incubated with 5% CO2 before the results were read because many strains did not grow well without this modification. The antibiotic susceptibilities of all H. influenzae strains were determined by three methods: broth microdilution, Etest, and disk diffusion.
Mueller-Hinton broth (Oxoid Ltd., Basingstoke, United Kingdom) was supplemented with HTM supplement (Oxoid) and yeast extract (5%; Difco, Detroit, MI). Microtiter plates (Sensititre Enzyme 13 and STRHAE1; Trek Diagnostics Inc. Westlake, OH) were inoculated to produce a final density of approximately 5 x 105 CFU/ml, which was regularly controlled by colony counting on chocolate agar after overnight incubation. The inoculated plates were incubated at 35°C for 20 to 24 h in 5% CO2 before interpretation of the results. The MIC was defined as the lowest concentration of antibiotic that inhibited growth. Ampicillin, amoxicillin, amoxicillin-clavulanic acid (2:1 ratio), cefaclor, cefuroxime, cefotaxime, and cefixime were evaluated.
The disk diffusion agar method was performed by following the CLSI guidelines (4, 5) using HTM base (Oxoid) supplemented with HTM supplement (Oxoid) and yeast extract (5%; Difco, Detroit, MI). Plates were inoculated with each bacterial suspension adjusted to a McFarland standard of 0.5 and incubated for 20 to 24 h at 35°C in 5% CO2. Standard disks of ampicillin (10 µg), amoxicillin-clavulanic acid (30 µg), cefaclor (30 µg), cefuroxime acid (30 µg), cefotaxime (30 µg), and cefixime (5 µg) were purchased from Oxoid. Also, low-strength disks of ampicillin (2 µg) and amoxicillin-clavulanic acid (3 µg) (Oxoid) were tested.
For the Etest method, the same antibiotics mentioned above were evaluated. Briefly, colonies grown overnight on chocolate agar were suspended in saline solution to a turbidity equivalent to a McFarland standard of 0.5, and 150-mm-diameter agar plates were inoculated by confluent swabbing of the surface with the adjusted suspensions. Etest strips were placed in an equidistant radial fashion on the surfaces of the plates, and the plates were incubated at 35°C in 5% CO2 for 20 to 24 h. The MIC end point was read where the growth inhibition ellipse intersected the MIC on the Etest gradient strip.
β-Lactamase production was determined by the chromogenic cephalosporin test with nitrocephin as a substrate (28).
To date, amoxicillin susceptibility breakpoints have not been specifically established by the CLSI; instead, the results of the ampicillin susceptibility tests are to be used to predict the activity of amoxicillin (6). In accordance with this and with other authors (12), we considered isolates with an amoxicillin MIC of
1 µg/ml to be susceptible, isolates with an amoxicillin MIC of 2 µg/ml to be intermediate, and isolates with an amoxicillin MIC of
4 µg/ml to be resistant.
Amplification and sequence analysis. Sequencing and analysis of the ftsI and blaTEM gene sequences were done as described previously (14; García-Cobos and Campos, submitted).
Analysis of results. MICs obtained by the Etest method were rounded up to the next log2 concentration. Agreement between broth microdilution and Etest results was achieved when the results of both methods were in the range of ±1 log2 unit of each other. Pearson correlation coefficients (r values) were generated to compare the Etest and reference microdilution methods. Sensitivity and specificity values were calculated as published previously (27).
Very major errors were defined as results that indicated a lack of resistance mechanism (gBLNAS) by disk diffusion, Etest, or microdilution when they were gBLNAR or gBLPACR by the gold standard method. Major errors were classified as results that indicated the presence of mutations in the ftsI gene (gBLNAR or gBLPACR) by disk diffusion, Etest, or microdilution when they had no resistance mechanisms (gBLNAS) by the gold standard method.
For the best separation of the gBLNAR and gBLPACR populations, the following criteria were taken into account: sensitivity and specificity values of
90%, categorical agreement at
95%, and a tolerance of very major and major errors at
5% (32).
The data were managed and the statistics were calculated by using the Computer programs Whonet (WHO/CSR/DRS/99.1; World Health Organization) and GraphPad Prism (GraphPad Software, Inc.).
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TABLE 2. Susceptibilities to ampicillin, amoxicillin, and cefaclor of H. influenzae isolates according to resistance class and susceptibility-testing method
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However, important differences in testing methods were observed for the gBLNAR isolates, as 76.5% of them were susceptible to ampicillin by microdilution and 88.2% were found to be susceptible by Etest (Table 2). Moreover, 79.4% of the gBLNAR isolates were identified as nonsusceptible to amoxicillin by microdilution but only 32.4% by Etest (Table 2).
Differences were also observed for the β-lactamase-positive isolates: 100% were correctly identified as resistant by the microdilution method, but 85% were categorized as resistant, 10% as intermediate, and 5% as susceptible by Etest with either ampicillin or amoxicillin (Table 2). This finding may have clinical consequences, as
15% of β-lactamase-positive H. influenzae isolates could be misclassified as nonresistant by the Etest. Accordingly, a β-lactamase test should be used along with the Etest.
The whole collection, independent of resistance class, was categorized as susceptible to amoxicillin-clavulanic acid according to the current CLSI breakpoints (data not shown).
With cefaclor, 94.1% and 76.5% of the gBLNAR population were susceptible by microdilution and Etest, respectively, indicating that the nonsusceptible population was 5.9% by microdilution and 23.5% by Etest (Table 2).
The majority of isolates of all resistance genotypes were classified as susceptible to cefuroxime, cefotaxime, and cefixime according to the CLSI breakpoints (6), and no significant differences were observed between the microdilution and Etest methods.
Comparison of broth microdilution and Etest. A comparison of the Etest with microdilution showed an overall essential agreement of 80.9% for both ampicillin and amoxicillin (Table 3). For the resistant gBLNAR class, essential agreement was 97% for ampicillin and 73.5% for amoxicillin. The poorest essential agreement was for the gBLPAR strains (25% for ampicillin and 15% for amoxicillin) (Table 3).
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TABLE 3. Comparison of H. influenzae susceptibility results obtained by the Etest method and the broth microdilution reference method
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Total essential agreement for cefaclor was 61.7%, but it was much lower for gBLPAR strains (10%), as MICs were much lower by Etest than by microdilution (Table 3). The overall essential agreement for cefuroxime, cefotaxime, and cefixime was >90%, and it was >80% for any resistance class (data not shown), suggesting that Etest is a good method for testing these cephalosporins.
Population distribution according to resistance class.
Figure 1 shows H. influenzae susceptibilities to ampicillin, amoxicillin, and amoxicillin-clavulanic acid according to the resistance class and testing method. The ampicillin MIC range for gBLPAR strains was 8 to
32 µg/ml by microdilution and 1 to 64 µg/ml by Etest (Fig. 1); for amoxicillin, a MIC range of 8 to
64 µg/ml was observed by microdilution and 1 to 32 µg/ml by Etest (Fig. 1).
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FIG. 1. Distribution of ampicillin, amoxicillin, and amoxicillin-clavulanic acid MICs for the H. influenzae study collection according to their resistance classes. gBLNAS, n = 25; gBLPAR, n = 20; gBLNAR, n = 34; gBLPACR, n = 15.
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By microdilution, gBLPACR isolates had an amoxicillin-clavulanic acid MIC range between 1 and 4 µg/ml and gBLPAR isolates had an amoxicillin-clavulanic acid MIC range of 0.25 to 2 µg/ml (Fig. 1). By Etest, the amoxicillin-clavulanic acid MIC ranges were as follows: gBLPACR, 0.5 to 2 µg/ml; gBLPAR, 0.25 to 1 µg/ml; gBLNAR, 0.25 to 4 (peaking at 1 µg/ml); and gBLNAS, 0.25 to 0.5 µg/ml (Fig. 1).
Detection of increased resistance to cefixime.
The gBLNAR strains presenting increased resistance to cefixime, corresponding to the III-like group with mutations at the SSN motif (14), showed a cefixime MIC of
0.5 µg/ml by either the microdilution or the Etest method and a cefixime disk diameter of
29 mm (Fig. 2). The Etest also distinguished this population with reduced susceptibility to cefixime (data not shown).
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FIG. 2. Distribution of cefixime (CFM) MICs and disk diameters for H. influenzae isolates according to the mutations in the ftsI gene.
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TABLE 4. Distributions of the disk inhibition zone diameters obtained for H. influenzae isolates
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95%) was by testing amoxicillin and amoxicillin-clavulanic acid by microdilution (cutoff, MIC
1 µg/ml). gBLPACR isolates were best identified by testing amoxicillin-clavulanic acid by microdilution (cutoff, MIC
2 µg/ml) (Table 5). |
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TABLE 5. Microbiological criteria for the laboratory detection of gBLNAR and gBLPACR H. influenzae
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1 µg/ml; categorical agreement, 89.8%) or amoxicillin susceptibility by Etest (cutoff, MIC
1 µg/ml; categorical agreement, 84.7%) (Table 5).
The analysis of several tentative breakpoints based on disk diffusion was less reliable, as all of them had very major errors (10 to 23% of samples tested) (Table 5). Although a disk diameter of
23 mm for the amoxicillin disk (2 µg) and
20 mm for the amoxicillin-clavulanic acid disk (2/1 µg) may be indicative of gBLNAR isolates (88% specificity in both cases), the sensitivity values were low (76.5% and 58.8%, respectively) (Table 5).
Based on the H. influenzae population analyzed in this study, we propose a practical algorithm to detect the low-gBLNAR, gBLPAR, and gBLPACR isolates by the microdilution method (Fig. 3). These simple indications may help clinical laboratories to improve their recognition of the several genotypes of aminopenicillin resistance in H. influenzae.
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FIG. 3. Practical algorithm to detect four genotypes of aminopenicillin susceptibility in H. influenzae by the reference microdilution method. bla (+), β-lactamase positive; AMX, amoxicillin; AMC, amoxicillin-clavulanic acid.
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However, most previous studies have analyzed a low number of BLNAR isolates, have not reported the resistance genotypes, and have contained isolates with high MICs that are rarely found in laboratories in the United States or Europe. In addition, ampicillin and amoxicillin susceptibilities in BLNAR strains have not been compared. The importance of studying H. influenzae susceptibility to amoxicillin seems clear, since ampicillin is very little used at the community level in the United States and Europe while amoxicillin, on the other hand, is the most used antibiotic, accounting for about 22% of the total outpatient consumption, mainly for respiratory and other common infections (16).
In this study, low-gBLNAR isolates with well-established PBP3 mechanism of resistance patterns had ampicillin microdilution MICs between 0.5 and 4 µg/ml, with a peak at 1 µg/ml (Fig. 1). Consequently, the majority of these isolates (76.5%) would have been reported as ampicillin susceptible and only 23.5% as nonsusceptible (Table 2) by current CLSI recommendations (6). This same population had a MIC range of 1 to 4 µg/ml for amoxicillin, and the majority of gBLNAR isolates (79.4%) would have been reported as nonsusceptible (Table 2). These data suggest that the best option to detect gBLNAR isolates is by testing amoxicillin by the microdilution method.
Separation of low-gBLNAR and gBLNAS isolates is of epidemiological interest, as an increase in low-gBLNAR strains could indicate adaptive changes in PBP3 in response to increased pressure posed by β-lactamase-resistant antibiotics (amoxicillin-clavulanic acid and new cephalosporins). Also, it is important for clinical reasons, since, although these isolates mainly cause respiratory infections in the United States and Europe, an increasing number of BLNAR isolates cause invasive infections, including meningitis (11.7% in this study).
In this study, detection of low-gBLNAR H. influenzae isolates by the disk diffusion method was of limited use because the proportion of overlapping inhibition zones between gBLNAS and gBLNAR populations was unacceptably high. Accordingly, the disk method should not be used alone or as a screening method to detect BLNAR isolates. Other reports (1, 9, 21, 23, 24, 25, 34) have proposed discriminative criteria for the disk diffusion method, particularly for the low-strength disks, but we could not reproduce those results, perhaps due to the different gBLNAR populations analyzed.
Both ampicillin and amoxicillin are currently recommended by the British Society for Antimicrobial Chemotherapy for susceptibility testing of H. influenzae, with a breakpoint of
1 µg/ml considered susceptible and
2 µg/ml considered resistant for both antibiotics (3). For the most commonly recommended amoxicillin doses in children, a PK/PD breakpoint of
2 µg/ml may indicate susceptibility and
4 µg/ml may indicate resistance (30). Our data suggest that all isolates with an amoxicillin MIC of 2 µg/ml are of the gBLNAR genotype and contain amino acid substitutions in PBP3, thus risking an eventual clinical failure, particularly in invasive infections.
Our data support in part the British Society for Antimicrobial Chemotherapy proposed breakpoints, although an important proportion of isolates with an amoxicillin MIC of 1 µg/ml would be gBLNAR. A way to reconcile PK/PD data and the presence of resistance mechanisms would be by establishing for the low-gBLNAR isolates a tentative proposal of an amoxicillin MIC of
0.5 µg/ml as susceptible (no resistance mechanisms; PK/PD data favorable), 1 to 2 µg/ml as intermediate (resistance mechanisms present but PK/PD data favorable), and
4 µg/ml as resistant (resistance mechanisms present and PK/PD data not favorable).
In summary, we have shown that detection of low-gBLNAR H. influenzae isolates presenting with amino acid substitutions at the PBP3 protein can be challenging, as they may overlap with the susceptible population (gBLNAS); however, our data indicate that testing amoxicillin by broth microdilution effectively separates gBLNAS and gBLNAR populations. Amoxicillin is the most common antibiotic used to treat community-acquired respiratory infections in the United States and Europe. Based on PK/PD data and the presence of PBP3 mutations, an amoxicillin MIC of
0.5 µg/ml indicates fully susceptible isolates, a MIC of 1 to 2 µg/ml indicates intermediate isolates with PBP3 mutations for which special clinical precautions should be taken, and a MIC of
4 µg/ml indicates resistant isolates for which amoxicillin should not be used.
Published ahead of print on 28 April 2008. ![]()
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