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Antimicrobial Agents and Chemotherapy, September 2008, p. 3180-3187, Vol. 52, No. 9
0066-4804/08/$08.00+0 doi:10.1128/AAC.00146-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department of Microbiology, Hôpital Maisonneuve-Rosemont, Montréal, Québec, Canada,1 Department of Microbiology and Immunology, University of Montreal, Québec, Canada,2 Department of Microbiology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada,3 Department of Pharmacy, Hôpital Maisonneuve-Rosemont, Montréal, Québec, Canada,4 University of Sherbrooke, Sherbrooke, Québec, Canada5
Received 2 February 2008/ Returned for modification 30 March 2008/ Accepted 15 June 2008
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Clinical reports have implicated the emergence of a toxinotype III epidemic strain (18) which produces high levels of toxins A (TcdA) and B (TcdB) in vitro (36). This hypertoxigenicity appears to be associated with mutations to the tcdC regulatory gene, which normally inhibits the expression of tcdA and tcdB (19, 20, 36). The epidemic strain also produces the C. difficile binary toxin (CDT), whose impact on virulence remains unclear (31). By pulsed-field gel electrophoresis, the outbreak strain has been designated North American pulsovar 1 (NAP1) and also as restriction endonuclease analysis pattern BI or PCR ribotype 027 (22, 36). The BI/NAP1/027 strain has emerged in the United Kingdom, Belgium, The Netherlands, and France; it has also been implicated in hospital outbreaks throughout the United States (3, 11, 15-17, 22, 34).
Although several studies have explored the molecular epidemiology of outbreaks caused by the BI/NAP1/027 strain in Quebec and other areas (11, 15, 17, 18, 22, 34), an association between BI/NAP1/027 infection and increased disease severity compared to the disease severity previously associated with the common ribotype 001 strain has not previously been demonstrated. The objectives of the study described in this report were (i) to compare the clinical characteristics, risk factors, and outcomes of patients with C. difficile infections according to pathogen ribotype; (ii) to compare the in vitro activities of antibiotics against isolates with various ribopatterns; and (ii) to examine the associations between resistance to specific antibiotics, recent exposure to these antibiotics, and the occurrence of C. difficile infections.
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Identification of isolates.
During two distinct survey periods, C. difficile isolates were collected from consecutive cytotoxin-positive stool samples submitted to the clinical microbiology laboratory at Hôpital Maisonneuve-Rosemont, a 545-bed university-affiliated tertiary care hospital in Montreal, Quebec, Canada. Isolates from the preepidemic period (November 2000 to March 2001) were collected during the development and validation of an in-house PCR method for the identification of C. difficile (10). Isolates from the epidemic period (October 2003 to January 2004 and May 2004) were collected as part of the outbreak investigation. In both cases, inclusion criteria were (i) age
18 years and (ii) hospitalization at the time of the C. difficile infection episode or admission within 72 h of submission of a positive stool sample. We included patients experiencing their first episode of C. difficile infection as well as those with recurrent disease, which we defined as a new episode of diarrhea attributed to C. difficile between 14 and 60 days after a previous diagnosis of a C. difficile infection.
The stool samples were incubated overnight at 35°C in a cooked meat broth, and cytotoxicity assays were performed with Vero cells with a C. difficile toxin/antitoxin kit (TechLab, Blacksburg, VA). The broths from cytotoxin-positive stool samples were subcultured onto cycloserine-cefoxitin-fructose agar (Quelab Laboratories). C. difficile isolates were identified by their characteristic colony morphology and odor, and their identities were confirmed by latex agglutination (Serobact C. difficile latex slide agglutination test; Oxoid). The isolates were subcultured and frozen at –80°C in brain heart infusion glycerol broth medium until antibiotic susceptibility testing was performed.
Determination of antibiotic susceptibilities. MICs were determined by an agar dilution method on brucella 5% laked sheep blood agar, according to the recommendations of the Clinical and Laboratory Standards Institute (CLSI; formerly NCCLS) (27). Control strains included Bacteroides fragilis ATCC 25285, Bacteroides thetaiotaomicron ATCC 29741, and Clostridium difficile ATCC 9689.
Molecular characterization and typing. Strains from each period were PCR-ribotyped and probed for four major C. difficile toxin genes (tcdA, tcdB, cdtA, and cdtB), as described previously (19). Briefly, genomic DNA was obtained from a pure bacterial culture by phenol-chloroform extraction. Following normalization, the DNA from each isolate was subjected to PCR-ribotyping and simplex PCR for toxin genes tcdA, tcdB, and cdtA/cdtB, as well as the macrolide-lincosamide-streptogramin B resistance element ermB and a 16S ribosomal control sequence. C. difficile strains ATCC 9689 and ATCC 43255 were included as controls. Each amplification run included a number of blind-coded and randomly selected repeat specimens.
Risk factors and outcomes. Patient records were reviewed to collect information on demographic characteristics, recent hospitalization (to classify cases as being community or nosocomially acquired), antibiotic exposure (within the previous 2 months), and other potential risk factors for C. difficile infection, including a history of C. difficile infection. We also collected diagnostic, therapeutic, and clinical data, including those required to calculate the Charlson comorbidity index, a measure of the overall burden of disease based on the presence of 19 chronic comorbidities (5).
C. difficile infection colonization pressure (CCP) (7, 8) was estimated only for patients who had their first episode of C. difficile infection. Data from prospective surveillance for nosocomial C. difficile infections by ward from April 2004 to March 2005 (earlier data were unavailable) and the number of days spent on those wards up to 60 days before the date of collection of the positive stool sample were used to estimate the CCP risk score. Patients who had not been admitted to the hospital or who had spent time only on a low-risk ward (a ward with a nosocomial C. difficile infection incidence rate of <10/1,000 admissions) were considered to have been exposed to a low CCP, those who spent 1 to 15 days on a medium-risk ward (a ward with a nosocomial C. difficile infection incidence rate of 10 to 45/1,000 admissions), or 1 to 5 days on a high-risk ward (a ward with a nosocomial C. difficile infection incidence rate of >45/1,000 admissions) were considered to have been exposed to a moderate CCP, while patients who spent >15 days on a medium-risk ward or >5 days on a high-risk ward were considered to have been exposed to a high CCP.
Reviewers were blinded to the ribotype identity and the in vitro susceptibilities of the isolates recovered from each case. The primary outcome was all-cause mortality occurring within 30 days of diagnosis of a C. difficile infection. The secondary outcome was a recurrence of C. difficile infection between 14 and 60 days after the diagnosis of the previous episode. Death was considered attributable to C. difficile infection if the physician judged that the patient would not have died within 30 days in the absence of C. difficile infection.
Antibiotic utilization. Antibiotic consumption was obtained from the pharmacy department and was expressed in defined daily doses (DDD) per 1,000 patient days (6, 37). Data were available from April 2000 to March 2007.
Statistical analyses.
Data were analyzed with Stata (version 8.0) software (StataCorp, College Station, TX). Proportions were compared by the
2 test or, when the numbers were small, Fisher's exact test. Unconditional logistic regression was used for multivariate analysis. Models were built sequentially, starting with the variable most strongly associated with the outcome and continuing until no other variable reached significance. When the final model was reached, each variable was dropped in turn to assess its effect. Different models were compared by using the likelihood ratio test, with significance determined at a P value of 0.05.
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FIG. 1. (a) Monthly rates of admissions at Hôpital Maisonneuve-Rosemont for a first episode of C. difficile infection, January 1999 to March 2007 (source, MedEcho, Institut National de Santé Publique du Québec). (b) Ribotype frequencies of isolates during the two study periods (55 patients in 2000 and 2001 and 175 patients in 2003 and 2004).
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Patient characteristics. The demographic and clinical characteristics of the patients according to the ribotypes of the infecting C. difficile strains are shown in Table 1. The characteristics of patients infected with ribotypes 001 and 027 were similar. Both ribotype 001 and ribotype 027 strains were isolated more frequently from older patients (median ages, 76.5 and 75 years, respectively) than strains of other ribotypes (median age, 64 years) (P = 0.02). Compared to the patients infected with ribotype 001 or 027 strains, patients infected with strains of other ribotypes were more likely to have a concomitant diagnosis of lymphoma or leukemia (P = 0.001) and to have received chemotherapy within the past 2 months (P < 0.001). The median Charlson comorbidity index score and the cumulative patient hospitalization days within the preceding 6 months were similar in all three ribotype groups. The estimated CCP was significantly lower for patients infected with ribotype 027 strains than for patients infected with ribotype 001 strains (P = 0.001) and was similar to the CCP of patients infected with strains of other ribotypes.
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TABLE 1. Characteristics of patients by infecting C. difficile ribotype
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TABLE 2. Antibiotics received in the previous 2 months by patients with first episode of C. difficile infection, by ribotype
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2 mg/liter of metronidazole (CLSI breakpoint,
32 mg/liter), 52% of ribotype 027 isolates and 10% of ribotype 001 isolates had MICs >1 mg/liter (P < 0.001). A similar pattern was observed with tinidazole. Prior exposure to metronidazole did not account for higher metronidazole MICs. Among the 83 isolates recovered from patients who had received oral or intravenous metronidazole within the previous 2 months, 13% had an MIC of
0.25 mg/liter, 51% had an MIC of 0.5 mg/liter, and 36% had an MIC of 1 to 2 mg/liter. This was similar to the corresponding proportions of 16%, 50%, and 34% for isolates recovered from 145 patients who had not received metronidazole. |
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TABLE 3. MIC ranges, MIC50s, and MIC90s, by ribotype
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64 mg/liter reported such exposure (P = 0.004). Ribotype 027 isolates had lower clindamycin MICs than ribotype 001 isolates (MIC50s, 4 and >64 mg/liter, respectively). All ribotype 027 strains were susceptible to clindamycin and were negative for the ermB gene, whereas all ribotype 001 strains were clindamycin resistant; 88% of those strains were positive for the ermB gene. Treatment. Among the patients with their first episode of C. difficile infection, 4/45 (9%) in 2000 and 2001 and 14/124 (11%) in 2003 and 2004 received no specific treatment, other than the cessation of treatment with the predisposing agent. Among those who were treated in 2000 and 2001, 98% initially received oral metronidazole monotherapy and one patient received vancomycin. The corresponding values for 2003 and 2004 were 88% and 5%, with 7% of patients receiving a combination of oral vancomycin and intravenous metronidazole on the first day of therapy. Among the 40 patients who initially received metronidazole monotherapy for their first episode of C. difficile infection in 2000 and 2001, 3 (8%) were eventually switched to vancomycin due to a perceived failure, whereas 29/97 (30%) were eventually switched to vancomycin in 2003 and 2004 (P = 0.005). During the latter period, the probability of a switch from metronidazole to vancomycin was not significantly higher for patients infected with a ribotype 027 strain (25/75; 33%) than for those infected with a ribotype 001 strain (3/18; 17%) or a strain of another ribotype (1/4; 25%).
Outcomes.
Whereas the overall 30-day rates of mortality were not different among the patients between 2000-2001 (22%; 12/55) and 2003-2004 (25%; 43/175), those infected with a ribotype 027 strain were more than twice as likely to die within 30 days (Table 4). The rates of mortality were higher among older patients, those with a high Charlson comorbidity index score, and those with longer prior hospitalizations. A high level of leukocytosis (
20 x 109/liter) and acute renal failure were also strongly correlated with mortality. The association between infection with a ribotype 027 strain and death remained significant (AOR, 2.06, 95% CI, 1.00 to 4.22) after adjustment for age, Charlson comorbidity index score, and the duration of prior hospitalization. The peak levels of leukocytosis and creatinine were not fitted into this model, as these variables were clearly on the causal pathway between the more proximal variables and death. The association was stronger and more significant when the analysis was restricted to the 2003-2004 outbreak period: 41/140 (29%) patients infected with a ribotype 027 strain died within 30 days, whereas 2/35 (6%) patients infected with a ribotype 001 strain or a strain of another ribotype died within 30 days (AOR, 7.53; 95% CI, 1.60 to 35.52; P = 0.01). Death was attributed to C. difficile infection in 26/41 (63%) patients infected with a ribotype 027 strain and 2/12 (17%) patients infected with a ribotype 001 strain (P = 0.004).
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TABLE 4. Risk factors for 30-day mortality among patients with Clostridium difficile infection
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Antibiotic consumption. From April 2000 to March 2007 (Fig. 2), the rate of use of narrow-spectrum cephalosporins remained stable (mean, 51 DDD/1,000 patient days), while the rates of use of extended- and broad-spectrum cephalosporins decreased from 119 to 54 DDD/1,000 patient days (mean, 76 DDD/1,000 patient days). The rate of clindamycin use decreased from 27 to 16 DDD/1,000 patient days (mean, 22 DDD/1,000 patient days). The rate of macrolides use decreased from 62 to 26 DDD/1,000 patient days (mean, 44 DDD/1,000 patient days). In contrast, the overall rate of FQ use increased from 94 to 151 DDD/1,000 patient days (mean, 121 DDD/1,000 patient days). This increase was attributable to the introduction of respiratory quinolones (gatifloxacin was introduced on the formulary in November 2001 but was replaced by moxifloxacin in June 2005), since the rate of ciprofloxacin use remained unchanged from 2000 to 2007, with a mean of 87 DDD/1,000 patient days.
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FIG. 2. Antibiotic consumption at Hôpital Maisonneuve-Rosemont (April 2000 to March 2007). Cephalosporins 1, cephalexin, cefadroxil, and cefazolin; Cephalosporins 2-3, cefuroxime, cefoxitin, ceftriaxone, and ceftazidime; Macrolides, erythromycin, clarithromycin, and azithromycin. Gatifloxacin was introduced on the formulary in November 2001 and was replaced by moxifloxacin in June 2005.
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The increase in the rates of mortality from C. difficile infection observed concurrently with the emergence of the BI/NAP1/027 strain may reflect the higher incidence (possibly due to the more effective transmission of this strain within hospital environments), the aging population, or the higher intrinsic severity of infection with BI/NAP1/027 compared with the severity of infection with other strains. A recent study conducted by Hubert et al. in the province of Quebec (12) did not show a significant association between outbreak strains that were binary toxin positive and from which tcdC was deleted and the attributable or contributive rate of mortality as a result of C. difficile infection (AOR, 1.7; 95% CI, 0.7 to 3.9). Severe disease (death within 30 days after a diagnosis of C. difficile infection, a requirement for colectomy, and/or admission to intensive care because of C. difficile infection) was more frequent among patients infected with the outbreak strain, but this association did not remain significant after adjustment for age (AOR, 2.1; 95% CI, 0.98 to 4.6). To our knowledge, this is the first study documenting a higher case-fatality ratio specifically in association with BI/NAP1/027 infection, after adjustment for confounding factors such as age and the burden of chronic comorbidities. This is in line with in vitro measurements of toxin production, which showed that the levels of production of toxins A and B by BI/NAP1/027 were 16- and 23-fold higher, respectively, than the levels of production by other strains (36). Strains were not recovered in the preepidemic period from patients who were part of the initial reports of the Quebec outbreak (18, 29, 30).
The MICs of metronidazole were comparable to those published by others (2, 24). The observation that the MIC50s and MIC90s of metronidazole were 1 dilution higher for ribotype 027 strains than for ribotype 001 strains would seem to be inconsequential, as they were less than the CLSI susceptibility breakpoint (27) and could be within the margin of error for susceptibility tests. However, tinidazole also showed the same trend, and the same observation was made in the study of Hubert et al. (12). Since the fecal concentrations of metronidazole are low, especially when colitis has subsided (4), even a modest upward drift of MICs might become clinically relevant.
Although exposure to nearly all antimicrobial classes can trigger the onset of C. difficile infection (28), our data support the linkage of prior specific antimicrobial exposure, the development of (or the selection for) specific-antibiotic-resistant clones of C. difficile, and the development of C. difficile infection caused by the selected antibiotic-resistant ribotype. The BI/NAP1/027 isolates were highly resistant to FQs, as reported by others (9, 12, 18, 22, 26, 29), and were strongly associated with prior patient FQ exposure. An association between the BI/NAP1/027 clone and FQ use has consistently been reported in the literature (18, 26, 29). In a mouse model of gut colonization, FQs (gatifloxacin and moxifloxacin and, to a lesser extent, ciprofloxacin and levofloxacin) inhibited the growth of FQ-susceptible C. difficile strains in the cecum and promoted the overgrowth of FQ-resistant epidemic strains (1). Historical isolates of BI/NAP1 were susceptible to FQs (22). The acquisition of resistance to FQs presumably facilitated its transmission within the hospital environment, eventually promoting its emergence as an epidemic strain. The reasons for the differences in the propensities of various FQs to induce C. difficile infection remain to be elucidated. The activities of the antimicrobials against the pathogen and normal flora components, colonic antimicrobial concentrations, and the presence of sources of resistance determinants are only a few of the factors at play. Interestingly, in a parallel fashion, clindamycin and macrolide exposure was also shown to select for infection with C. difficile isolates resistant to the respective antimicrobials. The observed differences in estimated CCP risk scores suggest that ribotype 027 strains may be more transmissible than ribotype 001 strains, and this should be further investigated in prospective studies.
This study also shows that strain and susceptibility profiles are important for the identification of control measures. Historically, the restriction of clindamycin use has been particularly effective in the setting of high levels of clindamycin use and the presence of clindamycin-resistant C. difficile strains. However, in centers where BI/NAP1/027 isolates occupy a predominant place in the local repertoire of C. difficile strains, measures to reduce the use of FQs (35), combined with the use of comprehensive infection control measures (25), are required. At Hôpital Maisonneuve-Rosemont, the winter peak incidence decreased from 40 (2004) to 25 (2007) per 1,000 admissions, remaining higher than the mean preepidemic winter peak rates of
18 (1999 to 2002) per 1,000 admissions (Fig. 1a). Our results suggest that, in addition to vigorous environmental and infection control efforts, the effective control of C. difficile infections requires focused antimicrobial stewardship based on detailed epidemiological and microbiological information on the current local distribution of C. difficile ribotypes.
The outbreak described here involved the superimposition of the new epidemic clone on top of the prior existing and dominant ribotype 001 clone. Such an event resulted in extremely high rates of C. difficile infection. Infection with ribotype 027 strains was found to double the likelihood of 30-day mortality. The observed associations between the in vitro resistance of C. difficile to specific classes of antibiotics, previous patient exposure to those antibiotics, and the development of C. difficile infection caused by a resistant ribotype illustrate the complex nature of the evolving C. difficile infection epidemic.
This study was supported in part by a research grant from Oscient Pharmaceutical.
Published ahead of print on 23 June 2008. ![]()
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