LAST UPDATED: June 2017
INSTRUCTIONS TO AUTHORS
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The editorial style of ASM journals conforms to the ASM Style Manual for Journals (American Society for Microbiology, 2017, in-house document [you may find the ASM Word List helpful]) and How To Write and Publish a Scientific Paper, 7th ed. (Greenwood, Santa Barbara, CA, 2011), as interpreted and modified by the editors and the ASM Journals Department. The editors and the Journals Department reserve the privilege of editing manuscripts to conform with the stylistic conventions set forth in the aforesaid publications and in these Instructions. Please note that ASM uses the serial comma. On receipt at ASM, an accepted manuscript undergoes an automated preediting, cleanup, and tagging process specific to the particular article type. To optimize this process, manuscripts must be supplied in the correct format and with the appropriate sections and headings. Type every portion of the manuscript double-spaced (a minimum of 6 mm between lines), including figure legends, table footnotes, and references, and number all pages in sequence, including the abstract, figure legends, and tables. Place the last two items after the References section. Manuscript pages must have continuous line numbers; manuscripts without line numbers may be editorially rejected by the editor, with a suggestion of resubmission after line numbers are added. The font size should be no smaller than 12 points. It is recommended that the following sets of characters be easily distinguishable in the manuscript: the numeral zero (0) and the letter “oh” (O); the numeral one (1), the letter “el” (l), and the letter “eye” (I); and a multiplication sign (×) and the letter “ex.” (x). Do not create symbols as graphics or use special fonts that are external to your word processing program; use the "insert symbol" function. Set the page size to 8.5 by 11 inches (ca. 21.6 by 28 cm). Italicize any words that should appear in italics, and indicate paragraph lead-ins in boldface type. Manuscripts may be editorially rejected, without review, on the basis of poor English or lack of conformity to the standards set forth in these Instructions. Authors who are unsure of proper English usage should have their manuscripts checked by someone proficient in the English language or engage a professional language editing service for help. Manuscript Submission Checklist
Supplemental material will be peer reviewed along with the manuscript and must be uploaded to the eJournalPress (eJP) peer review system at initial manuscript submission. The decision to publish the material online with the accepted article is made by the editor. It is possible that a manuscript will be accepted but that the supplemental material will not be. All supplemental text, tables, and figures should be combined in a single self-contained document (PDF), and no supplemental material should be included in the main manuscript. Supplemental data set and movie files may be uploaded separately. The number of supplemental material files is limited to 10. Supplemental files should be submitted in the following standard formats.
Unlike the manuscript, supplemental material will not be edited by the ASM Journals staff and proofs will not be made available. References related to supplemental material only should not be listed in the References section of an article; instead, include them with the supplemental material. Supplemental material will always remain associated with its article and is not subject to any modifications after publication. Material that has been published previously (print or online) is not acceptable for posting as supplemental material. Instead, the appropriate reference(s) to the original publication should be made in the manuscript. Copyright for the supplemental material remains with the author, but a license permitting the posting by ASM is included in the copyright transfer agreement completed by the corresponding author. If you are not the copyright owner, you must provide to ASM signed permission from the owner that allows posting of the material, as a supplement to your article, by ASM. You are responsible for including in the supplemental material any copyright notices required by the owner. See also “Publication Fees.” Research Articles should include the elements described in this section. Title, running title, byline, affiliation line, and corresponding author. Each manuscript should present the results of an independent, cohesive study; thus, numbered series titles are not permitted. Exercise care in composing a title. Avoid the main title/subtitle arrangement, complete sentences, and unnecessary articles. On the title page, include the title, the running title (not to exceed 54 characters and spaces), the name of each author, all authors' affiliations at the time the work was performed, the name(s) and e-mail address(es) of the corresponding author(s), and a footnote indicating the present address of any author no longer at the institution where the work was performed. Place a number sign (#) in the byline after the name of the author to whom inquiries regarding the paper should be directed (see "Correspondent footnote" below). Please review this sample title page for guidance. Study group in byline. A study group, surveillance team, working group, consortium, or the like (e.g., the Active Bacterial Core Surveillance Team) may be listed as a coauthor in the byline if its contributing members satisfy the requirements for authorship and accountability as described in these Instructions. The names (and institutional affiliations if desired) of the contributing members may be given as a separate paragraph in Acknowledgments. If the contributing members of the group associated with the work do not fulfill the criteria of substantial contribution to and responsibility for the paper, the group may not be listed in the author byline. Instead, it and the names of its contributing members may be listed in the Acknowledgments section. Correspondent footnote. The e-mail address for the corresponding author should be included on the title page of the manuscript. This information will be published in the article as a footnote to facilitate communication and will be used to notify the corresponding author of the availability of proofs and, later, of the PDF file of the published article. No more than two authors may be designated corresponding authors. Abstract. Limit the abstract to 250 words or fewer and concisely summarize the basic content of the paper without presenting extensive experimental details. Avoid abbreviations and references, and do not include diagrams. When it is essential to include a reference, use the format shown under “References” below (see the “Citations in abstracts” section). Conclude the abstract with a summary statement. Because the abstract will be published separately by abstracting services, it must be complete and understandable without reference to the text. Introduction. The introduction should supply sufficient background information to allow the reader to understand and evaluate the results of the present study without referring to previous publications on the topic. The introduction should also provide the hypothesis that was addressed or the rationale for the study. References should be chosen carefully to provide the most salient background rather than an exhaustive review of the topic. Results. In the Results section, include the rationale or design of the experiments as well as the results; reserve extensive interpretation of the results for the Discussion section. Present the results as concisely as possible in one of the following: text, table(s), or figure(s). Avoid extensive use of graphs to present data that might be more concisely or more quantitatively presented in the text or tables. Limit photographs (particularly photomicrographs and electron micrographs) to those that are absolutely necessary to show the experimental findings. Number figures and tables in the order in which they are cited in the text, and be sure that all figures and tables are cited. Discussion. The Discussion should provide an interpretation of the results in relation to previously published work and to the experimental system at hand and should not contain extensive repetition of the Results section or reiteration of the introduction. In short papers, the Results and Discussion sections may be combined. Materials and Methods. The Materials and Methods section should include sufficient technical information to allow the experiments to be repeated. When centrifugation conditions are critical, give enough information to enable another investigator to repeat the procedure: make of centrifuge, model of rotor, temperature, time at maximum speed, and centrifugal force (× g rather than revolutions per minute). For commonly used materials and methods (e.g., media and protein concentration determinations), a simple reference is sufficient. If several alternative methods are commonly used, it is helpful to identify the method briefly as well as to cite the reference. For example, it is preferable to state “cell were broken by ultrasonic treatment as previously described (9)” rather than “cells were broken as previously described (9).” This allows the reader to assess the method without constant reference to previous publications. Describe new methods completely, and give sources of unusual chemicals, equipment, or microbial strains. When large numbers of microbial strains or mutants are used in a study, include tables identifying the immediate sources (i.e., sources from whom the strains were obtained) and properties of the strains, mutants, bacteriophages, and plasmids, etc. A method or strain, etc., used in only one of several experiments reported in the paper may be described in the Results section or very briefly (one or two sentences) in a table footnote or figure legend. It is expected that the sources from whom the strains were obtained will be identified. As noted above, a paragraph dedicated to new accession numbers for nucleotide and amino acid sequences, microarray data, protein structures, gene expression data, and MycoBank data should appear at the end of Materials and Methods with the paragraph lead-in "Accession number(s)." Please also provide references (with URLs or DOIs) for the accession numbers. Acknowledgments. Statements regarding sources of direct financial support (e.g., grants, fellowships, and scholarships, etc.) should appear in the Acknowledgments. A funding statement indicating what role, if any, the funding agency had in your study (for example, “The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.”) may be included. Funding agencies may have specific wording requirements, and compliance with such requirements is the responsibility of the author. In cases in which research is not funded by any specific project grant, funders need not be listed, and the following statement may be used: “This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.” Statements regarding indirect financial support (e.g., commercial affiliations, consultancies, stock or equity interests, and patent-licensing arrangements) are also allowed. It is the responsibility of authors to provide a general statement disclosing financial or other relationships that are relevant to the study. (See the “Conflict of Interest” section.) Recognition of personal assistance should be given in the Acknowledgments section, as should any statements disclaiming endorsement or approval of the views reflected in the paper or of a product mentioned therein. In addition to acknowledging sources of financial support in the manuscript, authors should list any sources of funding in response to the Funding Sources question on the online submission form, providing relevant grant numbers where possible, and the authors associated with the specific funding sources. In the event that your submission is accepted, the funding source information provided in the submission form may be published, so please ensure that all information is entered accurately and completely. (It will be assumed that the absence of any information in the Funding Sources fields is a statement by the authors that no support was received.) Appendixes. Appendixes that contain additional material to aid the reader are permitted. Titles, authors, and reference sections that are distinct from those of the primary article are not allowed. If it is not feasible to list the author(s) of the appendix in the byline or the Acknowledgments section of the primary article, rewrite the appendix so that it can be considered for publication as an independent article, either full-length or Short-Form style. Equations, tables, and figures should be labeled with the letter "A" preceding the numeral to distinguish them from those cited in the main body of the text. In the reference list, references are numbered in the order in which they are cited in the article (citation-sequence reference system). In the text, references are cited parenthetically by number in sequential order. Data that are not published or not peer reviewed are simply cited parenthetically in the text (see section ii below). (i) References listed in the References section. The following types of references must be listed in the References section:
Provide the names of all the authors and/or editors for each reference; long bylines should not be abbreviated with “et al.” All listed references must be cited in the text. Abbreviate journal names according to the PubMed Journals Database (National Library of Medicine, National Institutes of Health), the primary source for ASM style (do not use periods with abbreviated words). The EndNote output style for ASM Journals’ current reference style can be found here; click “Open” and then “Download and Install” to save it to your EndNote Styles folder (it should replace any earlier output styles for ASM journals [all ASM journals use the same reference style]). Note that DOIs are not needed for most references, but see the exception for reference 17 below. ASM copy editors will automatically insert DOIs on all references in the CrossRef and PubMed databases during copyediting. URLs for government reports and other references not indexed in these databases should be provided if desired; URLs or DOIs for citations of database accession numbers and code/software should be provided by you. Follow the styles shown in the examples below.
*A reference to an in-press ASM publication should state the control number (e.g., AAC00123-17) if it is a journal article or the name of the publication if it is a book. In some online journal articles, posting or revision dates may serve as the year of publication; a DOI (preferred) or URL is required for articles with nontraditional page numbers or electronic article identifiers.
Note: a posting or accession date is required for any online reference that is periodically updated or changed. Citations of ASM Accepts manuscripts should look like the following example.
Other journals may use different styles for their publish-ahead-of-print manuscripts, but citation entries must include the following information: author name(s), posting date, title, journal title, and volume and page numbers and/or DOI. The following is an example:
To encourage data sharing and reuse, ASM recommends reporting data sets and/or code both in a dedicated “Data availability” paragraph and in References. The components of a complete data citation include the following:
The following templates may be helpful.
Examples follow.
(ii) References cited in the text. References that should be cited in the text include the following:
These references should be made parenthetically in the text as follows:
This style should also be used for Addenda in Proof. (iv) References related to supplemental material. If references must be cited in the supplemental material, list them in a separate References section within the supplemental material and cite them by those numbers; do not simply include citations of numbers from the reference list of the associated article. If the same reference(s) is to be cited in both the article itself and the supplemental material, then that reference would be listed in both References sections. The Short-Form format is intended for the presentation of brief observations that do not warrant full-length Research Articles. Submit Short-Form papers in the same way as Research Articles. They receive the same review, they are not published more rapidly than Research Articles, and they are not considered preliminary communications. The title, running title (not to exceed 54 characters and spaces), byline, and correspondent footnote should be prepared as for a Research Article. Each Short-Form paper must have an abstract of no more than 75 words. Do not use section headings in the body of the paper; combine methods, results, and discussion in a single section. Paragraph lead-ins are permissible. The text should be kept to a minimum and if possible should not exceed 1,000 words; the number of figures and tables should also be kept to a minimum. Materials and methods should be described in the text, not in figure legends or table footnotes. Present acknowledgments as in Research Articles. The References section is identical to that of Research Articles. Minireviews, Commentaries, Author Bios Minireviews Minireviews are brief (limit of six printed pages exclusive of references) biographical profiles, historical perspectives, or summaries of developments in fast-moving areas of chemotherapy. They must be based on published articles; they are not outlets for unpublished data. They may address any subject within the scope of AAC. For example, subject matter may range from structure-activity correlates among a group of semisynthetic cephalosporins to the comparative efficacies of new and old drugs in the prevention or treatment of diseases of microbial origin in humans. Minireviews may be either solicited or proffered by authors responding to a recognized need. Irrespective of origin, Minireviews are subject to review and should be submitted via the eJP online manuscript submission and peer review system. The cover letter should state whether the article was solicited and by whom. Minireviews must have abstracts. Limit the abstract to 250 words or fewer. The body of the Minireview may have section headings and/or paragraph lead-ins. Author Bios At the editor’s invitation, corresponding authors of minireviews may submit a short biographical sketch and photo for each author for publication with the article. Biographical information should be submitted at the modification stage.
Contact the scientific editor if you have questions about what to write. Contact the nlin{at}asmusa.org if you have questions about submitting your files. Commentaries Commentaries are invited communications concerning topics relevant to the readership of AAC and are intended to engender discussion. Reviews of the literature, methods and other how-to papers, and responses targeted at a specific published paper are not appropriate. Commentaries are subject to review. The length may not exceed four printed pages, and the format is like that of a Minireview (see above) except that the abstract is limited to 75 words. Challenging Clinical Cases in Antimicrobial Resistance Challenging Clinical Cases are brief articles (limit of three printed pages) designed to familiarize and provide guidance to the reader on the clinical approach to the treatment of real, challenging cases involving multidrug-resistant organisms (bacteria, viruses, fungi, and parasites). This section is focused on providing an up-to-date scientific rationale for choosing specific antimicrobials based on available clinical, microbiological, and pharmacological data and on discussing the impact of mechanisms of resistance on the outcomes for infected patients. These articles may discuss novel therapeutic strategies for treating patients infected with multidrug-resistant organisms. Only highly interesting cases that have important mechanistic and epidemiological or novel microbiological insights will be selected for review. The article should include (i) a brief abstract (limit of 75 words); (ii) a case section describing a single clinical case up to the point when the organism is isolated, characterization of the organism, and information about susceptibility testing, when appropriate; (iii) interesting photos, figures, and/or tables (limit of two combined) highlighting the clinical presentation (see “Illustrations and Tables” for guidelines on acceptable file types, resolution, size, etc.); (iv) a single multiple-choice question addressing the most relevant therapeutic issues (How would you interpret the susceptibility report? Which antimicrobials would be best for the patient presented in the case and why? What are the underlying mechanisms of resistance? Are there any particular pharmacological strategies, in terms of drug administration, delivery, etc., that could help in treating this patient?) with several possible answers as choices; (v) a description of the treatment strategy and patient outcome; and (vi) a reference list containing no more than 10 references. Sections ii and v above (case presentation and strategy/outcome) must not exceed 1,200 words combined. An expert in the field (a reviewer) will discuss the case in a brief commentary section and explore answers to the questions posed by the author. (The commentator's name and role will appear at the end of the published article byline.) These articles will be made freely available to readers at the time of publication. No page charges will be associated with these articles, but the standard fee for accepted supplemental material, if any, applies. In an attempt to stimulate conversations and engagement, readers will be able to add comments via an online feature. Two types of Letters to the Editor may be submitted. The first type (Comment Letter) is intended for comments on final, typeset articles published in the journal (not on accepted manuscripts posted online) and must cite published references to support the writer's argument. The second type (New-Data Letter) may report new, concise findings that are not appropriate for publication as Research Articles or Short-Form papers. Letters may be no more than 500 words long and must be typed double-spaced. Refer to a recently published Letter for correct formatting. Note that authors and affiliations are listed below the title. All Letters to the Editor must be submitted electronically, and the type of Letter (New Data or Comment) must be selected from the choices in the submission form. For Letters commenting on published articles, the cover letter should state the volume and issue in which the article was published, the title of the article, and the last name of the first author. In the Abstract section of the submission form, put "Not Applicable." Letters to the Editor do not have abstracts. Both types of Letter must have a title, which must appear on the manuscript and on the submission form. Figures and tables should be kept to a minimum. If the Letter is related to a published article, it will be sent to the editor who handled the article in question. If the editor believes that publication is warranted, he/she will solicit a reply from the corresponding author of the article and give approval for publication. New-Data Letters will be assigned to an editor according to subject matter and will be reviewed by that editor and/or a reviewer. Please note that some indexing/abstracting services do not include Letters to the Editor in their databases. Errata, Author Corrections, Retractions, CrossMark Errata Errata provide a means of correcting errors that occurred during the writing, typing, editing, or publication (e.g., a misspelling, a dropped word or line, or mislabeling in a figure) of a published article. Submit Errata via the eJP online manuscript submission and peer review system (see “Submission, Review, and Publication Processes”). In the Abstract section of the submission form (a required field), put “Not Applicable.” Upload the text of your Erratum as a Microsoft Word file. Please see a recent issue for correct formatting. Author Corrections Author Corrections provide a means of correcting errors of omission (e.g., author names or citations) and errors of a scientific nature that do not alter the overall basic results or conclusions of a published article (e.g., an incorrect unit of measurement or order of magnitude used throughout, contamination of one of numerous cultures, or misidentification of a mutant strain, causing erroneous data for only a [noncritical] portion of the study). Note that the addition of new data is not permitted. For corrections of a scientific nature or issues involving authorship, including contributions and use or ownership of data and/or materials, all disputing parties must agree, in writing, to publication of the Correction. For omission of an author's name, letters must be signed by the authors of the article and the author whose name was omitted. The editor who handled the article will be consulted if necessary. Submit an Author Correction via the eJP online manuscript submission and peer review system (see “Submission, Review, and Publication Processes”). Select Author Correction as the manuscript type. In the Abstract section of the submission form (a required field), put “Not Applicable.” Upload the text of your Author Correction as a Microsoft Word file. Please see a recent issue for correct formatting. Signed letters of agreement must be supplied as supplemental material not for publication (scanned PDF files). Retractions Retractions are reserved for major errors or breaches of ethics that, for example, may call into question the source of the data or the validity of the results and conclusions of an article. Submit Retractions via the eJP online manuscript submission and peer review system (see “Submission, Review, and Publication Processes”). In the Abstract section of the submission form (a required field), put “Not Applicable.” Upload the text of your Retraction as a Microsoft Word file. Letters of agreement signed by all of the authors must be supplied as supplemental material not for publication (scanned PDF files). The Retraction will be assigned to the editor in chief of the journal, and the editor who handled the paper and the chairperson of the ASM Journals Board will be consulted. If all parties agree to the publication and content of the Retraction, it will be sent to the Journals Department for publication. CrossMark ASM has implemented CrossMark. CrossMark is a multipublisher initiative to provide a standard way for readers to locate the current version of an article. Clicking on the CrossMark logo will indicate whether an article is current or whether updates have been published. Additional information about CrossMark can be found on CrossMark's website and on ASM's CrossMark policy page. |