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Antiviral Agents

Emergence of a Novel Lamivudine-Resistant Hepatitis B Virus Variant with a Substitution Outside the YMDD Motif

Hiromi Yatsuji, Chiemi Noguchi, Nobuhiko Hiraga, Nami Mori, Masataka Tsuge, Michio  Imamura, Shoichi Takahashi, Eiji Iwao, Yoshifumi Fujimoto, Hidenori Ochi, Hiromi Abe, Toshiro Maekawa, Chise Tateno, Katsutoshi Yoshizato, Fumitaka Suzuki, Hiromitsu Kumada, Kazuaki Chayama
Hiromi Yatsuji
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Chiemi Noguchi
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Nobuhiko Hiraga
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Nami Mori
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Masataka Tsuge
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Michio  Imamura
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Shoichi Takahashi
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
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Eiji Iwao
3Pharmaceuticals Research Unit, Mitsubishi Pharma Corporation, 1000 Kamoshida-cho, Aoba-ku, Yokohama 227-0033, Japan
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Yoshifumi Fujimoto
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
4Laboratory for Liver Disease, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Yokohama 230-0045, Japan
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Hidenori Ochi
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
4Laboratory for Liver Disease, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Yokohama 230-0045, Japan
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Hiromi Abe
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
4Laboratory for Liver Disease, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Yokohama 230-0045, Japan
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Toshiro Maekawa
4Laboratory for Liver Disease, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Yokohama 230-0045, Japan
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Chise Tateno
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
5Yoshizato Project, CLUSTER, and Hiroshima Prefectural Institute of Industrial Science and Technology, Higashihiroshima, Japan
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Katsutoshi Yoshizato
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
5Yoshizato Project, CLUSTER, and Hiroshima Prefectural Institute of Industrial Science and Technology, Higashihiroshima, Japan
6Developmental Biology Laboratory, Department of Biological Science, Graduate School of Science, Hiroshima University, Higashihiroshima, Japan
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Fumitaka Suzuki
7Department of Gastroenterology, Toranomon Hospital, Tokyo, Japan
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Hiromitsu Kumada
7Department of Gastroenterology, Toranomon Hospital, Tokyo, Japan
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Kazuaki Chayama
1Department of Medicine and Molecular Science, Division of Frontier Medical Science, Programs for Biomedical Research, Graduate School of Biomedical Sciences, Hiroshima University, 1-2-3, Kasumi, Minami-ku, Hiroshima-shi, 734-8551, Japan
2Liver Research Project Center, Hiroshima University, Hiroshima, Japan
4Laboratory for Liver Disease, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Yokohama 230-0045, Japan
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  • For correspondence: chayama@hiroshima-u.ac.jp
DOI: 10.1128/AAC.00239-06
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  • FIG. 1.
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    FIG. 1.

    (A) Clinical course of a patient who developed breakthrough without emergence of YMDD mutants during lamivudine therapy. Arrows a to e indicate time points of serum sampling for direct sequencing and RFLP PCR. (B) Nucleotide sequence analysis of the reverse transcriptase/polymerase gene of hepatitis B virus by direct sequencing. Time points of serum sampling (see panel A) were as follows: (a) just before lamivudine treatment, (b) after breakthrough, (c) after cessation of lamivudine treatment, (d) just before readministration of lamivudine, and (e) during adefovir and lamivudine therapy. Note that the wild type reappeared during the cessation of therapy (c and d), but it disappeared after readministration of the drug (e).

  • FIG. 2.
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    FIG. 2.

    Comparison of nucleotide sequences and amino acid sequences of two overlapping open reading frames, reverse transcriptase/polymerase and the HBs gene of the hepatitis B virus, before and after viral breakthrough. Sequences obtained from serum samples before (a) and after (b) breakthrough were compared. See Fig. 1A for time points of serum sampling. Nucleotide sequence numbers are those of typical HBV (e.g., accession no. AB206816 [31]), which starts from a unique EcoRI site.

  • FIG. 3.
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    FIG. 3.

    Replication ability of wild-type HBV and three mutants (S331C, rtA181T, and S331C/rtA181T). Plasmids containing 1.4-genome-length HBV were transiently transfected into HepG2 cells. (A) The replicative intermediates were analyzed by Southern blot hybridization. Core-associated replicative intermediates of HBV DNA were isolated from HepG2 cells at 3 days after transfection. The positions of relaxed circular DNA (RC) and replication intermediates (RI) are indicated. (B) Quantitative analyses of core-associated intermediates of HBV. Experiments were performed in triplicate. Values are relative to those of the wild type and are expressed as means ± SD. *, not significant compared to the wild type.

  • FIG. 4.
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    FIG. 4.

    In vitro analyses of susceptibility of wild-type HBV and three mutants (S331C, rtA181T, S331C/rtA181T) to lamivudine after transient transfection into HepG2 cells. Cells were transiently transfected with plasmids containing 1.4-genome-length HBV and treated with the indicated amount of lamivudine. (A) Southern blot analysis of replicative intermediate. Representative results for the wild type (wt) and the S331C/rtA181T mutant are shown. The positions of relaxed circular (RC) and replication intermediate (RI) forms of HBV DNA are indicated. (B) Dose-response curves of the four HBV strains against lamivudine. The curves were used to estimate the lamivudine IC50s for each HBV strains. Values are relative to no-lamivudine controls for each strain. Experiments were performed in triplicate. Values are expressed as means ± SD.

  • FIG. 5.
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    FIG. 5.

    In vivo analyses of the effect of lamivudine on wild-type and S331C/rtA181T mutant HBV. Four human hepatocyte-chimeric mice were inoculated with serum samples containing wild-type or mutant HBV. One of the animals fed with lamivudine died 6 weeks after the beginning of therapy.

  • FIG. 6.
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    FIG. 6.

    Detection of the rtA181T mutant by RFLP PCR assay. PCR-amplified DNA fragments were treated with EspI, which digests only wild-type sequences, and separated in a 3.5% agarose gel. (A) Agarose gel electrophoresis of RFLP PCR products. Wild-type and rtA181T mutant plasmids were used as controls. See Fig. 1A for the time points of serum sampling (a to e) for patient 1 and see Fig. 1B for a comparison with nucleotide sequence analyses. f and g indicate the time points before and after viral breakthrough for patient 2. (B) Agarose gel electrophoresis of RFLP PCR products using HBV DNA samples obtained from 39 patients who showed lamivudine breakthrough. Of the 39 samples, 35 were wild type (lanes 1 and 2). The remaining four samples (lanes 3 to 7) showed partial digestion, suggesting a mixture of wild-type and mutant strains. (C) Nucleotide sequence analysis of a sample by RFLP PCR suggested the presence of a wild-type-mutant mixture (lane 5 of panel B).

Tables

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  • TABLE 1.

    In vitro susceptibility of the S331/rtA181 mutant to lamivudinea

    StrainS331/rtA181 mutationLamivudine IC50 (μM)Resistance (fold)
    SourceType
    PatientWT−/−0.19 ± 0.011
    S331CC/−0.23 ± 0.011.2*
    rtA181T−/T0.58 ± 0.083**
    S331C/rtA181TC/T0.57 ± 0.063**
    LaboratoryWT−/−0.23 ± 0.041
    S331CC/−0.3 ± 0.051.3*
    rtA181T−/T0.88 ± 0.23.9**
    S331C/rtA181TC/T0.98 ± 0.124.3**
    • ↵ a Experiments were performed in triplicate. Values are expressed as means ± SD. WT, wild type. *, not significant; ** P < 0.001 compared to the wild type.

  • TABLE 2.

    In vitro susceptibility of the S331/rtA181 mutant to lamivudine, adefovir, and entecavira

    Patient strainS331/rtA181LamivudineAdefovirEntecavir
    IC50 (μM)Resistance (fold)IC50 (μM)Resistance (fold)IC50 (nM)Resistance (fold)
    WT−/−0.19 ± 0.0110.37 ± 0.110.19 ± 0.021
    S331C/rtA181TC/T0.57 ± 0.063**0.36 ± 0.080.98*0.23 ± 0.051.2*
    • ↵ a Experiments were performed in triplicate. Values are expressed as means ± SD. WT, wild type. *, not significant; ** P < 0.001 compared to the wild type.

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Emergence of a Novel Lamivudine-Resistant Hepatitis B Virus Variant with a Substitution Outside the YMDD Motif
Hiromi Yatsuji, Chiemi Noguchi, Nobuhiko Hiraga, Nami Mori, Masataka Tsuge, Michio  Imamura, Shoichi Takahashi, Eiji Iwao, Yoshifumi Fujimoto, Hidenori Ochi, Hiromi Abe, Toshiro Maekawa, Chise Tateno, Katsutoshi Yoshizato, Fumitaka Suzuki, Hiromitsu Kumada, Kazuaki Chayama
Antimicrobial Agents and Chemotherapy Oct 2006, 50 (11) 3867-3874; DOI: 10.1128/AAC.00239-06

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Emergence of a Novel Lamivudine-Resistant Hepatitis B Virus Variant with a Substitution Outside the YMDD Motif
Hiromi Yatsuji, Chiemi Noguchi, Nobuhiko Hiraga, Nami Mori, Masataka Tsuge, Michio  Imamura, Shoichi Takahashi, Eiji Iwao, Yoshifumi Fujimoto, Hidenori Ochi, Hiromi Abe, Toshiro Maekawa, Chise Tateno, Katsutoshi Yoshizato, Fumitaka Suzuki, Hiromitsu Kumada, Kazuaki Chayama
Antimicrobial Agents and Chemotherapy Oct 2006, 50 (11) 3867-3874; DOI: 10.1128/AAC.00239-06
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KEYWORDS

antiviral agents
hepatitis B virus
Lamivudine

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